Wall clock time and date at job start Tue Mar 31 2020 10:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29023 * 124.92073 * 2 1 4 4 C 1.31780 * 117.12862 * 179.97438 * 3 2 1 5 5 C 1.50693 * 122.75111 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47552 * 305.03220 * 5 4 3 7 7 C 1.50701 * 109.47333 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99819 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99884 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99859 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47325 * 34.99560 * 10 9 7 12 12 C 1.52999 * 109.47037 * 274.99395 * 10 9 7 13 13 C 1.52997 * 109.47277 * 154.99673 * 10 9 7 14 14 N 1.46500 * 109.47034 * 305.00032 * 13 10 9 15 15 C 1.46507 * 119.99502 * 269.99662 * 14 13 10 16 16 C 1.36936 * 120.00340 * 90.00286 * 14 13 10 17 17 H 1.08000 * 119.99841 * 22.02203 * 16 14 13 18 18 C 1.38808 * 119.99850 * 202.02859 * 16 14 13 19 19 N 1.31622 * 120.00290 * 11.42939 * 18 16 14 20 20 Si 1.86801 * 120.00067 * 191.42774 * 18 16 14 21 21 H 1.48499 * 109.47190 * 89.99884 * 20 18 16 22 22 H 1.48497 * 109.47168 * 210.00135 * 20 18 16 23 23 H 1.48505 * 109.46950 * 329.99810 * 20 18 16 24 24 C 1.33640 * 114.49594 * 0.24313 * 4 3 2 25 25 S 1.70983 * 124.91355 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46866 * 89.99199 * 1 2 3 27 27 H 1.08996 * 109.46958 * 209.99781 * 1 2 3 28 28 H 1.09005 * 109.46649 * 329.99772 * 1 2 3 29 29 H 1.09007 * 109.47482 * 185.03263 * 5 4 3 30 30 H 1.08998 * 109.46982 * 65.03228 * 5 4 3 31 31 H 1.08995 * 109.47294 * 59.99825 * 6 5 4 32 32 H 1.08998 * 109.46983 * 300.00007 * 6 5 4 33 33 H 0.97002 * 120.00131 * 359.71880 * 9 7 6 34 34 H 1.09001 * 109.47035 * 60.00364 * 12 10 9 35 35 H 1.08996 * 109.47385 * 179.97438 * 12 10 9 36 36 H 1.08999 * 109.47198 * 300.00243 * 12 10 9 37 37 H 1.09004 * 109.47015 * 64.99725 * 13 10 9 38 38 H 1.09002 * 109.47386 * 184.99613 * 13 10 9 39 39 H 1.08996 * 109.47006 * 94.04366 * 15 14 13 40 40 H 1.08999 * 109.46681 * 214.04024 * 15 14 13 41 41 H 1.08997 * 109.47553 * 334.04428 * 15 14 13 42 42 H 0.97000 * 120.00297 * 180.02562 * 19 18 16 43 43 H 1.08003 * 126.03325 * 179.76831 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8792 0.0005 5 6 4.5308 2.0244 0.0000 6 6 4.2335 2.9494 -1.1818 7 6 5.2135 4.0943 -1.1827 8 8 6.0655 4.1637 -0.3224 9 7 5.1424 5.0415 -2.1389 10 6 6.0954 6.1541 -2.1400 11 1 7.0656 5.8019 -1.7894 12 6 5.5889 7.2604 -1.2125 13 6 6.2356 6.7041 -3.5607 14 7 6.6054 5.6173 -4.4709 15 6 8.0180 5.3129 -4.7123 16 6 5.6308 4.8862 -5.0959 17 1 4.6402 5.2990 -5.2174 18 6 5.9161 3.6144 -5.5734 19 7 7.0408 3.0209 -5.2340 20 14 4.7036 2.7450 -6.6975 21 1 5.0149 3.0755 -8.1114 22 1 4.8081 1.2773 -6.4976 23 1 3.3239 3.1912 -6.3770 24 6 3.9353 -0.4008 -0.0042 25 16 2.4856 -1.4021 -0.0006 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 5.5450 1.6350 -0.0895 30 1 4.4370 2.5831 0.9312 31 1 3.2194 3.3388 -1.0923 32 1 4.3273 2.3907 -2.1130 33 1 4.4631 4.9841 -2.8289 34 1 5.4890 6.8686 -0.2003 35 1 6.2981 8.0881 -1.2129 36 1 4.6187 7.6126 -1.5631 37 1 5.2868 7.1368 -3.8781 38 1 7.0091 7.4720 -3.5785 39 1 8.3410 4.5243 -4.0328 40 1 8.1470 4.9804 -5.7423 41 1 8.6169 6.2074 -4.5416 42 1 7.2403 2.1323 -5.5680 43 1 4.9545 -0.7582 -0.0082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754326016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:40 Heat of formation + Delta-G solvation = 15.733766 kcal Electronic energy + Delta-G solvation = -23893.115589 eV Core-core repulsion = 20486.549274 eV Total energy + Delta-G solvation = -3406.566315 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.01973 -38.97183 -36.32255 -34.03176 -33.62924 -31.57402 -30.97795 -29.84116 -28.29966 -26.15976 -25.59871 -25.10648 -22.57019 -21.65740 -20.13966 -19.70018 -19.49339 -17.48003 -16.88600 -16.31321 -15.46244 -15.34928 -15.06178 -14.86824 -14.66678 -13.81393 -13.80807 -13.40372 -13.28929 -13.17827 -12.94577 -12.77427 -12.41707 -12.28144 -12.16234 -11.86006 -11.59428 -11.37211 -11.32038 -11.23347 -10.87152 -10.73476 -10.69421 -10.37081 -10.21518 -10.04577 -9.82807 -9.67323 -9.44466 -9.10985 -8.66901 -8.57741 -8.16390 -6.78290 -5.74580 -3.20448 0.67831 1.31081 1.67991 2.76885 3.32777 3.39483 3.41416 3.43258 3.96884 4.07127 4.45240 4.85768 5.13577 5.17049 5.24601 5.26741 5.35533 5.43512 5.51378 5.55363 5.65049 5.70292 5.73860 5.91480 6.02359 6.06534 6.13697 6.20606 6.30039 6.31272 6.41271 6.49412 6.58021 6.76773 6.93782 7.38367 7.40662 7.70247 7.73769 7.79988 8.35568 8.41507 9.06031 9.20186 9.84229 10.34276 11.29542 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.004157 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.977812 B = 6734.333625 C = 8034.851888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.048 3.952 3 N -0.466 5.466 4 C 0.078 3.922 5 C -0.025 4.025 6 C -0.131 4.131 7 C 0.519 3.481 8 O -0.567 6.567 9 N -0.688 5.688 10 C 0.118 3.882 11 H 0.075 0.925 12 C -0.159 4.159 13 C 0.142 3.858 14 N -0.599 5.599 15 C 0.164 3.836 16 C -0.255 4.255 17 H 0.067 0.933 18 C 0.007 3.993 19 N -0.900 5.900 20 Si 0.896 3.104 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C -0.255 4.255 25 S 0.098 5.902 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.404 0.596 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.045 0.955 41 H -0.005 1.005 42 H 0.252 0.748 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.256 -4.424 10.012 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.231 4.231 3 N -0.182 5.182 4 C -0.053 4.053 5 C -0.065 4.065 6 C -0.171 4.171 7 C 0.305 3.695 8 O -0.448 6.448 9 N -0.337 5.337 10 C 0.010 3.990 11 H 0.093 0.907 12 C -0.218 4.218 13 C 0.013 3.987 14 N -0.321 5.321 15 C 0.020 3.980 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.544 5.544 20 Si 0.726 3.274 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.394 4.394 25 S 0.352 5.648 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.239 0.761 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.014 0.986 42 H 0.062 0.938 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.034 -5.102 10.524 15.410 hybrid contribution -0.203 -0.133 -1.072 1.099 sum -10.237 -5.235 9.452 14.884 Atomic orbital electron populations 1.20433 0.85267 1.04032 1.03940 1.27038 1.01704 0.90918 1.03412 1.66075 1.04652 1.31459 1.15989 1.20400 0.90013 0.94486 1.00367 1.19910 0.95636 0.91715 0.99265 1.21498 0.99742 0.95726 1.00177 1.20356 0.84855 0.82882 0.81365 1.90604 1.37967 1.77445 1.38749 1.45721 1.34587 1.24515 1.28893 1.21772 0.92912 0.86156 0.98125 0.90688 1.22151 1.00832 0.98755 1.00050 1.21186 0.98751 0.91122 0.87599 1.43892 1.02881 1.36697 1.48619 1.20792 0.82458 0.94301 1.00479 1.19092 0.93015 0.95364 1.31001 0.91563 1.24979 0.97348 0.96204 1.00682 1.70079 1.24308 1.14139 1.45906 0.86395 0.80794 0.78983 0.81207 1.21517 1.21826 1.20468 1.26848 1.03033 0.95622 1.13887 1.83853 0.98463 1.13228 1.69228 0.89547 0.90264 0.89274 0.89447 0.89626 0.88886 0.88845 0.76088 0.92985 0.92416 0.93086 0.93403 0.93080 0.95462 0.93658 0.98620 0.93802 0.80470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.46 36.01 0.38 -0.23 16 2 C 0.05 0.57 7.39 -13.46 -0.10 0.47 16 3 N -0.47 -6.81 10.34 -8.06 -0.08 -6.90 16 4 C 0.08 1.16 6.08 -84.23 -0.51 0.64 16 5 C -0.02 -0.39 5.00 -27.89 -0.14 -0.53 16 6 C -0.13 -2.24 5.60 -27.88 -0.16 -2.39 16 7 C 0.52 10.38 7.79 -10.98 -0.09 10.30 16 8 O -0.57 -12.79 15.65 5.56 0.09 -12.70 16 9 N -0.69 -13.49 4.50 -53.81 -0.24 -13.73 16 10 C 0.12 2.26 2.88 -67.93 -0.20 2.06 16 11 H 0.07 1.66 7.58 -51.93 -0.39 1.26 16 12 C -0.16 -2.48 9.48 37.16 0.35 -2.13 16 13 C 0.14 2.76 5.36 -4.04 -0.02 2.74 16 14 N -0.60 -14.33 2.82 -181.12 -0.51 -14.84 16 15 C 0.16 4.04 9.01 59.85 0.54 4.58 16 16 C -0.26 -6.49 8.01 -15.06 -0.12 -6.61 16 17 H 0.07 1.63 7.84 -52.49 -0.41 1.22 16 18 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 19 N -0.90 -25.46 10.57 55.49 0.59 -24.87 16 20 Si 0.90 21.07 29.57 -169.99 -5.03 16.04 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.26 -3.31 11.07 29.12 0.32 -2.99 16 25 S 0.10 1.07 23.18 -107.50 -2.49 -1.42 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.40 7.98 -51.93 -0.41 0.99 16 30 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 31 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 32 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.40 7.84 7.38 -40.82 -0.30 7.54 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 38 H 0.05 0.91 7.86 -51.93 -0.41 0.51 16 39 H 0.03 0.74 7.44 -51.93 -0.39 0.35 16 40 H 0.04 1.19 7.15 -51.93 -0.37 0.82 16 41 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -31.33 369.87 -8.80 -40.13 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.87 Total: 6.71 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 0.17 Total: 6.00 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.25 Total: -60.34 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.49 Total: -1.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.33 -8.80 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.868 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds