Wall clock time and date at job start Tue Mar 31 2020 10:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00033 * 2 1 4 4 H 1.48496 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47058 * 299.99502 * 3 2 1 6 6 H 1.48503 * 109.47319 * 59.99395 * 3 2 1 7 7 C 1.37872 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00053 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47265 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47356 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99833 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46865 * 179.97438 * 12 11 10 14 14 C 1.38288 * 119.96770 * 270.01927 * 13 12 11 15 15 C 1.38241 * 120.10640 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.05773 * 359.97438 * 15 14 13 17 17 C 1.38703 * 119.94277 * 359.97438 * 16 15 14 18 18 O 1.35903 * 120.05406 * 180.29438 * 17 16 15 19 19 C 1.42905 * 117.00064 * 359.73121 * 18 17 16 20 20 C 1.50697 * 109.46904 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99697 * 269.72499 * 20 19 18 22 22 C 1.38243 * 119.99509 * 179.77027 * 21 20 19 23 23 C 1.38231 * 120.00328 * 0.50652 * 22 21 20 24 24 C 1.38237 * 119.99811 * 359.74673 * 23 22 21 25 25 C 1.38231 * 120.00276 * 90.00177 * 20 19 18 26 26 C 1.38116 * 119.97093 * 89.99585 * 13 12 11 27 27 H 0.97003 * 119.99978 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47008 * 59.99854 * 9 7 2 29 29 H 1.08996 * 109.46976 * 299.99877 * 9 7 2 30 30 H 1.08997 * 109.46967 * 59.99363 * 10 9 7 31 31 H 1.09008 * 109.46814 * 300.00128 * 10 9 7 32 32 H 1.00903 * 110.99434 * 303.95085 * 11 10 9 33 33 H 1.08996 * 109.47673 * 59.99573 * 12 11 10 34 34 H 1.09003 * 109.46860 * 299.99399 * 12 11 10 35 35 H 1.08000 * 119.94911 * 359.97438 * 14 13 12 36 36 H 1.08005 * 119.97392 * 180.02562 * 15 14 13 37 37 H 1.08008 * 120.02679 * 180.02562 * 16 15 14 38 38 H 1.08997 * 109.46692 * 299.99867 * 19 18 17 39 39 H 1.08996 * 109.46777 * 59.99891 * 19 18 17 40 40 H 1.07994 * 120.00531 * 0.02562 * 21 20 19 41 41 H 1.08006 * 119.99409 * 180.23084 * 22 21 20 42 42 H 1.07995 * 119.99990 * 179.72405 * 23 22 21 43 43 H 1.07996 * 119.99837 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.99843 * 0.02562 * 25 20 19 45 45 H 1.08000 * 120.03192 * 0.02696 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 -0.0001 12 6 2.4353 -6.0759 0.0005 13 6 1.6472 -7.3605 0.0005 14 6 1.2852 -7.9488 1.1985 15 6 0.5627 -9.1274 1.2018 16 6 0.2001 -9.7202 0.0076 17 6 0.5612 -9.1315 -1.1953 18 8 0.2005 -9.7095 -2.3712 19 6 -0.5449 -10.9263 -2.2944 20 6 -0.8529 -11.4153 -3.6861 21 6 -2.0176 -11.0185 -4.3161 22 6 -2.2979 -11.4634 -5.5947 23 6 -1.4186 -12.3134 -6.2390 24 6 -0.2565 -12.7144 -5.6069 25 6 0.0263 -12.2653 -4.3305 26 6 1.2868 -7.9488 -1.1960 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8904 31 1 2.8719 -3.6043 -0.8895 32 1 0.8741 -4.9846 0.7811 33 1 3.0627 -6.0349 0.8908 34 1 3.0638 -6.0348 -0.8891 35 1 1.5680 -7.4872 2.1330 36 1 0.2808 -9.5848 2.1387 37 1 -0.3647 -10.6409 0.0108 38 1 0.0408 -11.6783 -1.7659 39 1 -1.4767 -10.7481 -1.7577 40 1 -2.7066 -10.3577 -3.8112 41 1 -3.2061 -11.1503 -6.0883 42 1 -1.6398 -12.6644 -7.2361 43 1 0.4303 -13.3788 -6.1102 44 1 0.9339 -12.5792 -3.8363 45 1 1.5698 -7.4889 -2.1313 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273032607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:05 Heat of formation + Delta-G solvation = 2.300977 kcal Electronic energy + Delta-G solvation = -23284.546934 eV Core-core repulsion = 19845.494522 eV Total energy + Delta-G solvation = -3439.052412 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40466 -39.40644 -37.79704 -35.69817 -33.09828 -32.60257 -31.46828 -31.26916 -30.01249 -28.80305 -26.82234 -25.33816 -23.34785 -22.95882 -22.55038 -21.93357 -20.79405 -20.43960 -17.88357 -17.32734 -16.30449 -16.25179 -16.19855 -16.05691 -15.33651 -15.17788 -14.83394 -14.42428 -14.15576 -13.87558 -13.82074 -13.75885 -13.37237 -13.16799 -12.77362 -12.55845 -12.37152 -12.09110 -11.93168 -11.58846 -11.47837 -11.34614 -11.06282 -11.02760 -10.93144 -10.76810 -10.49974 -9.98540 -9.41783 -9.27960 -9.23219 -9.14545 -8.80584 -8.33755 -8.22712 -7.79449 -5.97807 -4.00377 0.84929 1.04432 1.31130 1.45715 2.98399 3.32633 3.39845 3.43979 3.61971 3.74337 4.34305 4.41277 4.46377 4.63024 4.72311 4.75533 4.81097 4.83835 4.90502 5.01818 5.14299 5.16774 5.26679 5.32779 5.35357 5.38128 5.52013 5.57552 5.66754 5.75336 5.91443 6.05061 6.07116 6.14184 6.19411 6.27379 6.34703 6.39510 6.41912 6.60285 6.64619 6.77181 6.99399 7.35127 7.47725 7.74794 7.84060 7.96873 8.10639 8.45355 9.07192 9.63296 11.13642 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.002016 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.193182 B =13885.356196 C =14998.595646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.065 3.935 11 N -0.685 5.685 12 C 0.094 3.906 13 C -0.033 4.033 14 C -0.152 4.152 15 C -0.082 4.082 16 C -0.215 4.215 17 C 0.125 3.875 18 O -0.309 6.309 19 C 0.102 3.898 20 C -0.095 4.095 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.096 4.096 26 C -0.128 4.128 27 H 0.260 0.740 28 H 0.026 0.974 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.059 0.941 32 H 0.338 0.662 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 -29.549 -5.613 30.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.316 5.316 12 C -0.035 4.035 13 C -0.034 4.034 14 C -0.170 4.170 15 C -0.100 4.100 16 C -0.234 4.234 17 C 0.081 3.919 18 O -0.223 6.223 19 C 0.027 3.973 20 C -0.095 4.095 21 C -0.112 4.112 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.114 4.114 26 C -0.147 4.147 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.172 -29.361 -6.498 30.150 hybrid contribution 0.584 0.828 1.079 1.480 sum -1.588 -28.533 -5.419 29.086 Atomic orbital electron populations 1.69990 1.06026 1.26460 1.50742 1.25016 0.94858 0.99253 0.95351 0.86524 0.80060 0.83767 0.77559 1.19771 1.20976 1.21059 1.21215 0.93028 0.90984 1.50715 0.92672 1.19078 0.94040 0.90383 0.97796 1.22196 0.97033 0.88278 0.98750 1.60649 1.19417 1.01558 1.49983 1.20919 0.93665 0.87773 1.01141 1.19717 0.96335 0.95251 0.92086 1.20994 1.01502 0.96809 0.97730 1.20852 0.96758 0.95185 0.97216 1.21153 1.07178 1.02713 0.92337 1.18969 0.95449 0.93151 0.84371 1.86160 1.69670 1.38075 1.28371 1.21542 0.95935 0.85451 0.94344 1.19514 0.95660 0.98814 0.95501 1.21138 0.96686 0.98384 0.95036 1.21191 0.99924 0.98035 0.94960 1.21246 0.94436 0.97434 0.99868 1.21164 0.97502 1.00518 0.95075 1.21090 0.98454 0.96886 0.94980 1.20314 1.01230 0.94109 0.99043 0.93055 0.95586 0.96777 0.96552 0.92219 0.84485 0.94631 0.90342 0.86071 0.85988 0.85900 0.91246 0.91127 0.85647 0.85675 0.85881 0.85777 0.85822 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.40 5.62 -3.82 -0.02 1.38 16 11 N -0.69 -12.64 6.49 -115.05 -0.75 -13.39 16 12 C 0.09 1.42 5.81 -4.97 -0.03 1.39 16 13 C -0.03 -0.46 5.39 -104.65 -0.56 -1.03 16 14 C -0.15 -1.88 9.70 -39.56 -0.38 -2.26 16 15 C -0.08 -0.90 10.04 -39.61 -0.40 -1.30 16 16 C -0.21 -2.39 9.04 -39.43 -0.36 -2.75 16 17 C 0.13 1.63 6.69 -39.22 -0.26 1.37 16 18 O -0.31 -3.87 10.12 -19.43 -0.20 -4.07 16 19 C 0.10 0.93 4.87 36.00 0.18 1.11 16 20 C -0.09 -0.87 5.51 -104.63 -0.58 -1.45 16 21 C -0.09 -0.83 9.70 -39.58 -0.38 -1.21 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 23 C -0.11 -0.81 10.05 -39.58 -0.40 -1.20 16 24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 25 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 26 C -0.13 -1.82 9.64 -39.44 -0.38 -2.20 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 32 H 0.34 6.08 8.72 -39.29 -0.34 5.74 16 33 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.12 1.06 6.30 -52.48 -0.33 0.73 16 38 H 0.07 0.52 7.61 -51.93 -0.40 0.13 16 39 H 0.07 0.57 7.59 -51.93 -0.39 0.17 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -32.43 381.88 -11.70 -44.13 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.92 Total: 2.49 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -5.31 Total: -25.25 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.01 Total: -39.93 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.20 Total: -4.07 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.43 -11.70 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273032607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.431 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds