Wall clock time and date at job start Tue Mar 31 2020 10:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47104 * 2 1 4 4 O 1.42901 * 109.46751 * 119.99724 * 2 1 3 5 5 C 1.42905 * 114.00134 * 90.00001 * 4 2 1 6 6 C 1.50703 * 109.47264 * 179.97438 * 5 4 2 7 7 N 1.31129 * 126.54729 * 89.71240 * 6 5 4 8 8 C 1.34497 * 105.60849 * 179.91609 * 7 6 5 9 9 C 1.50703 * 126.28293 * 180.12449 * 8 7 6 10 10 H 1.09000 * 109.47612 * 345.24129 * 9 8 7 11 11 C 1.53007 * 109.46747 * 105.24343 * 9 8 7 12 12 N 1.46496 * 109.47140 * 225.23645 * 9 8 7 13 13 C 1.34776 * 120.00093 * 154.99954 * 12 9 8 14 14 O 1.21290 * 119.99816 * 0.02562 * 13 12 9 15 15 C 1.50701 * 120.00558 * 180.02562 * 13 12 9 16 16 C 1.52995 * 109.47618 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47304 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00023 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99949 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99786 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47356 * 60.00108 * 21 19 17 23 23 H 1.48507 * 109.47120 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47391 * 299.99823 * 21 19 17 25 25 N 1.29942 * 107.42634 * 0.35011 * 8 7 6 26 26 O 1.21295 * 110.25076 * 359.78187 * 25 8 7 27 27 H 1.09002 * 109.47504 * 300.00588 * 1 2 3 28 28 H 1.09004 * 109.46832 * 60.00241 * 1 2 3 29 29 H 1.09000 * 109.47692 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46981 * 239.99427 * 2 1 3 31 31 H 1.09006 * 109.46511 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46659 * 299.99356 * 3 2 1 33 33 H 1.08994 * 109.47290 * 60.00026 * 3 2 1 34 34 H 1.09001 * 109.47103 * 300.00246 * 5 4 2 35 35 H 1.09004 * 109.47054 * 59.99750 * 5 4 2 36 36 H 1.08998 * 109.47039 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.46733 * 299.99334 * 11 9 8 38 38 H 1.08997 * 109.47344 * 60.00066 * 11 9 8 39 39 H 0.97006 * 120.00520 * 335.00923 * 12 9 8 40 40 H 1.09005 * 109.47156 * 300.00694 * 15 13 12 41 41 H 1.09001 * 109.46373 * 60.00349 * 15 13 12 42 42 H 1.08999 * 109.47399 * 300.00935 * 16 15 13 43 43 H 1.09003 * 109.47172 * 60.00126 * 16 15 13 44 44 H 0.96999 * 119.99490 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.1999 -2.0782 0.9888 6 6 2.7012 -2.6832 2.2748 7 7 1.9678 -3.1675 3.2479 8 6 2.8388 -3.5956 4.1791 9 6 2.4911 -4.2396 5.4964 10 1 1.4348 -4.0786 5.7121 11 6 2.7729 -5.7415 5.4199 12 7 3.3031 -3.6441 6.5605 13 6 2.8622 -3.6605 7.8340 14 8 1.7932 -4.1687 8.0991 15 6 3.6971 -3.0475 8.9285 16 6 2.9736 -3.1997 10.2680 17 6 3.8083 -2.5861 11.3624 18 1 4.7595 -2.1325 11.1261 19 6 3.3575 -2.6037 12.6653 20 7 2.1994 -3.1565 12.9530 21 14 4.3919 -1.8425 14.0217 22 1 4.6018 -0.4008 13.7343 23 1 3.6897 -1.9903 15.3219 24 1 5.7062 -2.5307 14.0875 25 7 4.0350 -3.3474 3.7362 26 8 3.9780 -2.8233 2.6439 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.2537 -2.5434 0.7126 35 1 2.9319 -2.2468 0.1988 36 1 2.5210 -6.2075 6.3725 37 1 2.1687 -6.1846 4.6282 38 1 3.8291 -5.9026 5.2043 39 1 4.1581 -3.2379 6.3485 40 1 4.6611 -3.5539 8.9771 41 1 3.8527 -1.9895 8.7174 42 1 2.0094 -2.6936 10.2197 43 1 2.8183 -4.2578 10.4789 44 1 1.8822 -3.1686 13.8696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360609708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:40 Heat of formation + Delta-G solvation = -28.184082 kcal Electronic energy + Delta-G solvation = -24969.057431 eV Core-core repulsion = 21117.833824 eV Total energy + Delta-G solvation = -3851.223607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.95214 -39.41488 -39.09474 -36.74835 -35.14735 -33.73298 -33.43647 -32.32630 -31.27755 -30.03783 -28.15789 -27.57109 -25.90599 -25.10031 -23.56583 -22.12029 -21.92413 -20.67907 -19.77996 -18.59975 -18.02897 -17.26657 -16.87607 -16.50906 -16.10048 -15.77239 -15.58662 -14.94658 -14.42384 -14.35657 -14.17249 -13.85797 -13.52696 -13.36137 -13.18988 -12.77016 -12.63171 -12.48546 -12.38089 -12.19212 -12.06643 -11.97403 -11.85762 -11.58314 -11.33747 -11.26341 -11.15277 -10.89224 -10.60707 -10.38295 -10.29120 -9.94054 -9.66798 -9.20411 -9.03868 -8.98695 -8.29865 -5.94069 -3.98412 0.68275 1.77119 2.26858 2.97660 3.18121 3.31249 3.36407 3.40839 3.42836 3.53672 3.78588 4.27854 4.44401 4.46507 4.49498 4.59887 4.63367 4.70514 4.99944 5.11952 5.14034 5.19393 5.28646 5.30223 5.33920 5.40731 5.44141 5.57622 5.65957 5.69101 5.73505 5.87041 6.09406 6.23247 6.25149 6.49442 6.55972 6.88986 7.75375 7.77688 7.82794 7.87634 8.08769 8.39970 8.70298 9.09558 9.64862 11.16847 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.002246 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.775595 B =12465.620432 C =13247.207236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 C -0.152 4.152 4 O -0.375 6.375 5 C 0.160 3.840 6 C 0.176 3.824 7 N -0.450 5.450 8 C 0.170 3.830 9 C 0.235 3.765 10 H 0.118 0.882 11 C -0.157 4.157 12 N -0.739 5.739 13 C 0.516 3.484 14 O -0.529 6.529 15 C -0.129 4.129 16 C 0.038 3.962 17 C -0.528 4.528 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 N -0.367 5.367 26 O 0.092 5.908 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.401 0.599 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 3.180 -32.579 32.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.027 3.973 3 C -0.209 4.209 4 O -0.293 6.293 5 C 0.082 3.918 6 C -0.045 4.045 7 N -0.185 5.185 8 C -0.104 4.104 9 C 0.128 3.872 10 H 0.136 0.864 11 C -0.216 4.216 12 N -0.394 5.394 13 C 0.304 3.696 14 O -0.403 6.403 15 C -0.169 4.169 16 C 0.000 4.000 17 C -0.566 4.566 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 N -0.071 5.071 26 O 0.030 5.970 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.155 2.575 -31.366 31.472 hybrid contribution 0.876 0.591 0.242 1.084 sum 1.031 3.166 -31.125 31.302 Atomic orbital electron populations 1.22340 0.95369 1.02810 1.03138 1.22204 0.94081 0.93921 0.87081 1.21890 1.02066 0.93983 1.02990 1.88031 1.86947 1.17537 1.36813 1.20563 1.01256 0.83149 0.86877 1.28234 0.80345 0.97699 0.98227 1.71886 1.31631 1.14173 1.00780 1.26008 0.84296 1.00368 0.99726 1.19003 0.98473 0.91818 0.77953 0.86417 1.22179 1.02317 0.93293 1.03850 1.46295 1.23691 1.62505 1.06953 1.21644 0.87038 0.78318 0.82551 1.90680 1.22830 1.44476 1.82329 1.21889 0.99365 1.00363 0.95245 1.18904 0.95467 0.98266 0.87365 1.21182 1.05035 1.38059 0.92334 0.92640 1.25027 0.95096 0.95490 0.98791 1.69989 1.19235 1.44176 1.19416 0.86640 0.80310 0.79731 0.81163 1.20263 1.21288 1.20246 1.74607 1.22821 1.14220 0.95489 1.85309 1.30191 1.56014 1.25488 0.91352 0.91247 0.92156 0.91468 0.91693 0.90805 0.91457 0.88325 0.89131 0.89921 0.91450 0.91935 0.76420 0.90000 0.90129 0.95761 0.95708 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.86 9.53 37.16 0.35 -0.51 16 2 C 0.08 0.43 3.34 -26.73 -0.09 0.34 16 3 C -0.15 -0.73 9.56 37.16 0.36 -0.37 16 4 O -0.37 -3.02 9.97 -35.23 -0.35 -3.37 16 5 C 0.16 0.98 6.37 36.01 0.23 1.21 16 6 C 0.18 1.80 8.14 -13.06 -0.11 1.69 16 7 N -0.45 -5.81 11.55 -9.88 -0.11 -5.92 16 8 C 0.17 2.31 7.01 -156.37 -1.10 1.21 16 9 C 0.23 3.40 3.12 -69.08 -0.22 3.18 16 10 H 0.12 1.88 7.58 -51.93 -0.39 1.49 16 11 C -0.16 -1.99 9.47 37.16 0.35 -1.64 16 12 N -0.74 -11.62 5.07 -54.93 -0.28 -11.90 16 13 C 0.52 10.25 7.79 -10.99 -0.09 10.16 16 14 O -0.53 -12.48 15.65 5.55 0.09 -12.39 16 15 C -0.13 -2.70 5.64 -27.89 -0.16 -2.85 16 16 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 17 C -0.53 -15.22 9.11 -34.44 -0.31 -15.53 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 21 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 N -0.37 -4.78 11.86 30.89 0.37 -4.41 16 26 O 0.09 1.04 11.31 18.12 0.20 1.24 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.28 7.87 -51.93 -0.41 -0.13 16 30 H 0.07 0.19 7.79 -51.93 -0.40 -0.21 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.44 7.87 -51.93 -0.41 0.03 16 35 H 0.09 0.26 8.09 -51.93 -0.42 -0.16 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.40 5.60 8.36 -40.82 -0.34 5.26 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 42 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -35.68 379.56 -6.63 -42.31 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.99 Total: -0.65 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -0.99 Total: -0.60 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.71 Total: -49.22 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.06 Total: -14.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.68 -6.63 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360609708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.122 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds