Wall clock time and date at job start Tue Mar 31 2020 10:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47104 * 2 1 4 4 O 1.42901 * 109.46751 * 119.99724 * 2 1 3 5 5 C 1.42905 * 114.00134 * 90.00001 * 4 2 1 6 6 C 1.50703 * 109.47264 * 179.97438 * 5 4 2 7 7 N 1.31129 * 126.54729 * 89.71240 * 6 5 4 8 8 C 1.34497 * 105.60849 * 179.91609 * 7 6 5 9 9 C 1.50703 * 126.28293 * 180.12449 * 8 7 6 10 10 H 1.09000 * 109.47612 * 345.24129 * 9 8 7 11 11 C 1.53007 * 109.46747 * 105.24343 * 9 8 7 12 12 N 1.46496 * 109.47140 * 225.23645 * 9 8 7 13 13 C 1.34776 * 120.00093 * 154.99954 * 12 9 8 14 14 O 1.21290 * 119.99816 * 0.02562 * 13 12 9 15 15 C 1.50701 * 120.00558 * 180.02562 * 13 12 9 16 16 C 1.52995 * 109.47618 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47304 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00023 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99949 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99786 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47356 * 60.00108 * 21 19 17 23 23 H 1.48507 * 109.47120 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47391 * 299.99823 * 21 19 17 25 25 N 1.29942 * 107.42634 * 0.35011 * 8 7 6 26 26 O 1.21295 * 110.25076 * 359.78187 * 25 8 7 27 27 H 1.09002 * 109.47504 * 300.00588 * 1 2 3 28 28 H 1.09004 * 109.46832 * 60.00241 * 1 2 3 29 29 H 1.09000 * 109.47692 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46981 * 239.99427 * 2 1 3 31 31 H 1.09006 * 109.46511 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46659 * 299.99356 * 3 2 1 33 33 H 1.08994 * 109.47290 * 60.00026 * 3 2 1 34 34 H 1.09001 * 109.47103 * 300.00246 * 5 4 2 35 35 H 1.09004 * 109.47054 * 59.99750 * 5 4 2 36 36 H 1.08998 * 109.47039 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.46733 * 299.99334 * 11 9 8 38 38 H 1.08997 * 109.47344 * 60.00066 * 11 9 8 39 39 H 0.97006 * 120.00520 * 335.00923 * 12 9 8 40 40 H 1.09005 * 109.47156 * 300.00694 * 15 13 12 41 41 H 1.09001 * 109.46373 * 60.00349 * 15 13 12 42 42 H 1.08999 * 109.47399 * 300.00935 * 16 15 13 43 43 H 1.09003 * 109.47172 * 60.00126 * 16 15 13 44 44 H 0.96999 * 119.99490 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.1999 -2.0782 0.9888 6 6 2.7012 -2.6832 2.2748 7 7 1.9678 -3.1675 3.2479 8 6 2.8388 -3.5956 4.1791 9 6 2.4911 -4.2396 5.4964 10 1 1.4348 -4.0786 5.7121 11 6 2.7729 -5.7415 5.4199 12 7 3.3031 -3.6441 6.5605 13 6 2.8622 -3.6605 7.8340 14 8 1.7932 -4.1687 8.0991 15 6 3.6971 -3.0475 8.9285 16 6 2.9736 -3.1997 10.2680 17 6 3.8083 -2.5861 11.3624 18 1 4.7595 -2.1325 11.1261 19 6 3.3575 -2.6037 12.6653 20 7 2.1994 -3.1565 12.9530 21 14 4.3919 -1.8425 14.0217 22 1 4.6018 -0.4008 13.7343 23 1 3.6897 -1.9903 15.3219 24 1 5.7062 -2.5307 14.0875 25 7 4.0350 -3.3474 3.7362 26 8 3.9780 -2.8233 2.6439 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.2537 -2.5434 0.7126 35 1 2.9319 -2.2468 0.1988 36 1 2.5210 -6.2075 6.3725 37 1 2.1687 -6.1846 4.6282 38 1 3.8291 -5.9026 5.2043 39 1 4.1581 -3.2379 6.3485 40 1 4.6611 -3.5539 8.9771 41 1 3.8527 -1.9895 8.7174 42 1 2.0094 -2.6936 10.2197 43 1 2.8183 -4.2578 10.4789 44 1 1.8822 -3.1686 13.8696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360609708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:40 Heat of formation + Delta-G solvation = -55.427023 kcal Electronic energy + Delta-G solvation = -24970.238773 eV Core-core repulsion = 21117.833824 eV Total energy + Delta-G solvation = -3852.404949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.89219 -40.97242 -39.55415 -37.91504 -36.25490 -35.56942 -34.44373 -33.32317 -32.91853 -31.47968 -28.72578 -27.97631 -27.78988 -26.32147 -24.57614 -23.81674 -22.30707 -21.95618 -21.33891 -19.48273 -19.17846 -18.64848 -17.78810 -17.58042 -17.51766 -16.77647 -16.58575 -16.43701 -16.27185 -15.43612 -15.06536 -14.80360 -14.67210 -14.38554 -14.23333 -13.98334 -13.82552 -13.44344 -13.36183 -13.26039 -13.03243 -12.85970 -12.80869 -12.80243 -12.64960 -12.51966 -12.35375 -12.28401 -11.94466 -11.69214 -11.67123 -11.34725 -11.30038 -10.85185 -10.70608 -10.57675 -10.38900 -8.18730 -6.32804 -0.16145 0.79942 1.41353 1.45998 1.53301 1.53718 1.58020 1.87912 2.33473 2.43264 2.68800 3.01613 3.14010 3.59073 3.83329 3.93044 4.00078 4.08625 4.10491 4.17565 4.27093 4.33239 4.39988 4.44683 4.50189 4.51898 4.69734 4.75949 4.78441 4.85534 4.94974 4.98918 5.01821 5.03832 5.21513 5.33573 5.37578 5.48414 5.60964 5.83694 6.11093 6.16221 6.36276 6.84426 6.90279 7.15910 7.37061 8.93676 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.002246 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.775595 B =12465.620432 C =13247.207236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 C -0.153 4.153 4 O -0.405 6.405 5 C 0.156 3.844 6 C 0.192 3.808 7 N -0.478 5.478 8 C 0.158 3.842 9 C 0.234 3.766 10 H 0.098 0.902 11 C -0.149 4.149 12 N -0.719 5.719 13 C 0.521 3.479 14 O -0.574 6.574 15 C -0.119 4.119 16 C 0.043 3.957 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.936 5.936 21 Si 0.975 3.025 22 H -0.264 1.264 23 H -0.287 1.287 24 H -0.262 1.262 25 N -0.375 5.375 26 O 0.099 5.901 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.414 0.586 40 H 0.107 0.893 41 H 0.102 0.898 42 H -0.017 1.017 43 H -0.013 1.013 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 4.085 -34.846 35.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.024 3.976 3 C -0.210 4.210 4 O -0.325 6.325 5 C 0.079 3.921 6 C -0.029 4.029 7 N -0.213 5.213 8 C -0.115 4.115 9 C 0.127 3.873 10 H 0.116 0.884 11 C -0.208 4.208 12 N -0.374 5.374 13 C 0.310 3.690 14 O -0.453 6.453 15 C -0.158 4.158 16 C 0.006 3.994 17 C -0.583 4.583 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.188 1.188 23 H -0.212 1.212 24 H -0.187 1.187 25 N -0.079 5.079 26 O 0.036 5.964 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.250 0.750 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.002 0.998 43 H 0.005 0.995 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.264 3.490 -33.687 33.943 hybrid contribution 0.190 0.345 0.799 0.891 sum 2.454 3.835 -32.888 33.202 Atomic orbital electron populations 1.22353 0.95504 1.02919 1.02891 1.22408 0.93999 0.93941 0.87257 1.21927 1.01985 0.94131 1.02997 1.87987 1.87346 1.18405 1.38730 1.21012 1.03212 0.82436 0.85473 1.29061 0.79480 0.95878 0.98520 1.71881 1.32267 1.15512 1.01613 1.25711 0.84855 1.01320 0.99596 1.18978 0.97130 0.93067 0.78086 0.88377 1.22099 1.03349 0.91734 1.03582 1.45990 1.23987 1.61425 1.05950 1.21354 0.86170 0.77842 0.83663 1.90670 1.24709 1.46676 1.83215 1.21662 0.99566 1.02214 0.92385 1.18685 0.94433 0.95201 0.91122 1.21669 1.05775 1.37936 0.92947 0.90720 1.26140 0.96385 0.95885 1.02033 1.70168 1.21492 1.45771 1.20155 0.85364 0.78560 0.79213 0.77041 1.18830 1.21221 1.18663 1.74583 1.22564 1.14506 0.96226 1.85285 1.30739 1.55606 1.24815 0.93553 0.89546 0.91868 0.88429 0.91819 0.88871 0.93406 0.86577 0.85137 0.91692 0.89529 0.90840 0.74987 0.87439 0.88011 0.99819 0.99456 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.53 71.98 0.69 -0.76 16 2 C 0.08 0.63 3.34 30.59 0.10 0.73 16 3 C -0.15 -1.24 9.56 71.98 0.69 -0.55 16 4 O -0.41 -5.76 9.97 -148.98 -1.49 -7.24 16 5 C 0.16 1.46 6.37 71.24 0.45 1.92 16 6 C 0.19 3.55 8.14 88.38 0.72 4.27 16 7 N -0.48 -11.92 11.55 -303.24 -3.50 -15.43 16 8 C 0.16 4.18 7.01 138.46 0.97 5.15 16 9 C 0.23 6.80 3.12 44.25 0.14 6.93 16 10 H 0.10 3.27 7.58 -2.39 -0.02 3.25 16 11 C -0.15 -3.70 9.47 71.98 0.68 -3.02 16 12 N -0.72 -22.40 5.07 -446.08 -2.26 -24.66 16 13 C 0.52 21.09 7.79 87.66 0.68 21.77 16 14 O -0.57 -28.47 15.65 -3.06 -0.05 -28.51 16 15 C -0.12 -4.96 5.64 29.85 0.17 -4.79 16 16 C 0.04 2.46 4.26 29.84 0.13 2.58 16 17 C -0.55 -31.63 9.11 25.60 0.23 -31.40 16 18 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 19 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 20 N -0.94 -60.06 13.29 21.45 0.28 -59.77 16 21 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 25 N -0.37 -9.19 11.86 -60.36 -0.72 -9.91 16 26 O 0.10 2.03 11.31 74.90 0.85 2.88 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.06 0.46 7.87 -2.39 -0.02 0.44 16 30 H 0.10 0.18 7.79 -2.39 -0.02 0.16 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.12 0.69 7.87 -2.39 -0.02 0.68 16 35 H 0.13 0.18 8.09 -2.38 -0.02 0.17 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.41 10.98 8.36 -92.70 -0.77 10.21 16 40 H 0.11 3.95 8.14 -2.38 -0.02 3.93 16 41 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 42 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 43 H -0.01 -0.82 8.10 -2.39 -0.02 -0.84 16 44 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -80.85 379.56 1.48 -79.36 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.23 Total: 13.36 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 6.11 Total: 2.89 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -6.20 Total: -109.77 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.69 Total: -32.88 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -80.85 1.48 -79.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360609708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.934 kcal (2) G-P(sol) polarization free energy of solvation -80.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds