Wall clock time and date at job start Tue Mar 31 2020 11:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99836 * 2 1 4 4 H 1.48497 * 109.46983 * 269.99685 * 3 2 1 5 5 H 1.48492 * 109.47135 * 29.99945 * 3 2 1 6 6 H 1.48502 * 109.46933 * 150.00300 * 3 2 1 7 7 C 1.37873 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00319 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99915 * 179.97438 * 7 2 1 10 10 C 1.53123 * 109.52341 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.27855 * 177.62671 * 10 9 7 12 12 N 1.46850 * 109.52368 * 300.82412 * 11 10 9 13 13 C 1.46895 * 110.99976 * 185.83876 * 12 11 10 14 14 C 1.50703 * 109.46979 * 169.99761 * 13 12 11 15 15 C 1.38305 * 119.96262 * 90.00144 * 14 13 12 16 16 C 1.38262 * 120.13146 * 179.97438 * 15 14 13 17 17 C 1.38132 * 120.06619 * 0.02562 * 16 15 14 18 18 C 1.38820 * 119.93570 * 359.97438 * 17 16 15 19 19 N 1.40187 * 120.06797 * 180.02562 * 18 17 16 20 20 C 1.35229 * 126.05241 * 359.97270 * 19 18 17 21 21 C 1.35319 * 107.70962 * 179.97438 * 20 19 18 22 22 C 1.39928 * 107.93260 * 359.97438 * 21 20 19 23 23 N 1.30869 * 108.24085 * 359.75933 * 22 21 20 24 24 C 1.38098 * 119.97068 * 269.98020 * 14 13 12 25 25 C 1.46846 * 111.19656 * 61.73905 * 12 11 10 26 26 C 1.53039 * 109.52572 * 298.25771 * 25 12 11 27 27 H 0.97005 * 120.00275 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.52020 * 59.87962 * 9 7 2 29 29 H 1.09006 * 109.50113 * 57.68774 * 10 9 7 30 30 H 1.08998 * 109.54131 * 297.58840 * 10 9 7 31 31 H 1.08995 * 109.45967 * 180.81083 * 11 10 9 32 32 H 1.09001 * 109.45251 * 60.83347 * 11 10 9 33 33 H 1.09003 * 109.47156 * 49.99995 * 13 12 11 34 34 H 1.08999 * 109.47599 * 289.99738 * 13 12 11 35 35 H 1.07994 * 119.93466 * 359.70405 * 15 14 13 36 36 H 1.07996 * 119.96590 * 180.02562 * 16 15 14 37 37 H 1.08006 * 120.03304 * 179.97438 * 17 16 15 38 38 H 1.07992 * 126.14147 * 359.93540 * 20 19 18 39 39 H 1.08002 * 126.03411 * 180.02562 * 21 20 19 40 40 H 1.07996 * 125.87199 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.03035 * 359.97438 * 24 14 13 42 42 H 1.09003 * 109.46041 * 58.27804 * 25 12 11 43 43 H 1.08996 * 109.46249 * 178.24154 * 25 12 11 44 44 H 1.08993 * 109.50314 * 299.23759 * 26 25 12 45 45 H 1.09004 * 109.53110 * 179.13589 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0232 -2.6372 0.0014 11 6 5.5524 -2.6312 -0.0591 12 7 5.9927 -1.9379 -1.2764 13 6 7.4496 -2.0329 -1.4386 14 6 7.8365 -1.5316 -2.8061 15 6 8.1351 -0.1942 -2.9926 16 6 8.4910 0.2694 -4.2456 17 6 8.5488 -0.6026 -5.3154 18 6 8.2497 -1.9456 -5.1314 19 7 8.3080 -2.8331 -6.2150 20 6 8.6391 -2.5153 -7.4870 21 6 8.5770 -3.6486 -8.2239 22 6 8.1960 -4.6939 -7.3753 23 7 8.0400 -4.2073 -6.1705 24 6 7.8930 -2.4083 -3.8717 25 6 5.5532 -0.5368 -1.2779 26 6 4.0241 -0.4803 -1.2539 27 1 -0.4851 0.8401 -0.0004 28 1 3.8761 -0.6779 0.8881 29 1 3.6268 -3.1647 -0.8663 30 1 3.6970 -3.1388 0.9125 31 1 5.9193 -3.6574 -0.0727 32 1 5.9482 -2.1155 0.8159 33 1 7.7601 -3.0722 -1.3313 34 1 7.9403 -1.4266 -0.6772 35 1 8.0860 0.4903 -2.1587 36 1 8.7241 1.3142 -4.3881 37 1 8.8265 -0.2398 -6.2941 38 1 8.9048 -1.5334 -7.8497 39 1 8.7855 -3.7317 -9.2803 40 1 8.0582 -5.7253 -7.6643 41 1 7.6604 -3.4527 -3.7253 42 1 5.9493 -0.0310 -0.3973 43 1 5.9208 -0.0418 -2.1767 44 1 3.6278 -0.9738 -2.1413 45 1 3.6980 0.5597 -1.2395 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543780098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:21 Heat of formation + Delta-G solvation = 115.130814 kcal Electronic energy + Delta-G solvation = -25181.984329 eV Core-core repulsion = 21780.117337 eV Total energy + Delta-G solvation = -3401.866992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69819 -39.66292 -38.16819 -34.66294 -33.41522 -32.13448 -31.07148 -30.40479 -30.14713 -29.08396 -26.92598 -24.51122 -23.71897 -22.66750 -22.33605 -21.20213 -20.80607 -20.20131 -18.81855 -18.11818 -16.67627 -16.35601 -15.81401 -15.62651 -15.40429 -15.21867 -14.46382 -14.21617 -14.13641 -13.87747 -13.71666 -13.28561 -13.06568 -13.00305 -12.86506 -12.63454 -12.25024 -12.02445 -11.82497 -11.67902 -11.43133 -11.21407 -10.85458 -10.82285 -10.55276 -10.45334 -10.06263 -9.88723 -9.60262 -9.36666 -9.13043 -8.97693 -8.89715 -8.49339 -8.21794 -7.95033 -6.03555 -4.01606 0.66162 1.14455 1.99658 2.18374 2.55146 3.28046 3.37311 3.39956 3.54026 4.21151 4.36056 4.43565 4.46376 4.65946 4.70783 4.89726 5.00760 5.11411 5.15608 5.27429 5.35861 5.44441 5.47660 5.55326 5.60114 5.66438 5.71066 5.80285 5.86214 5.91717 6.06550 6.11649 6.16002 6.19983 6.34722 6.37719 6.44083 6.47482 6.55664 6.75987 6.85649 6.95056 6.99811 7.25075 7.39549 7.41539 7.52042 7.66288 7.82363 8.57627 9.01381 9.59516 11.10096 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.003188 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.001435 B = 8779.942618 C = 8908.747076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.096 4.096 11 C 0.057 3.943 12 N -0.528 5.528 13 C 0.090 3.910 14 C -0.045 4.045 15 C -0.121 4.121 16 C -0.094 4.094 17 C -0.144 4.144 18 C 0.153 3.847 19 N -0.318 5.318 20 C 0.051 3.949 21 C -0.266 4.266 22 C 0.051 3.949 23 N -0.285 5.285 24 C -0.095 4.095 25 C 0.052 3.948 26 C -0.115 4.115 27 H 0.262 0.738 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.176 0.824 39 H 0.152 0.848 40 H 0.189 0.811 41 H 0.139 0.861 42 H 0.025 0.975 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.274 -2.700 -12.549 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.070 4.070 12 N -0.253 5.253 13 C -0.038 4.038 14 C -0.046 4.046 15 C -0.140 4.140 16 C -0.112 4.112 17 C -0.165 4.165 18 C 0.061 3.939 19 N -0.093 5.093 20 C -0.092 4.092 21 C -0.294 4.294 22 C -0.136 4.136 23 N -0.104 5.104 24 C -0.115 4.115 25 C -0.076 4.076 26 C -0.153 4.153 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.193 0.807 39 H 0.170 0.830 40 H 0.206 0.794 41 H 0.157 0.843 42 H 0.043 0.957 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 21.575 -3.056 -11.666 24.717 hybrid contribution 0.891 1.643 -0.437 1.919 sum 22.466 -1.413 -12.104 25.558 Atomic orbital electron populations 1.69904 1.06269 1.26795 1.51238 1.25028 0.94671 0.98991 0.94644 0.86849 0.79816 0.83744 0.77843 1.20596 1.22609 1.19243 1.21071 0.88892 0.94406 1.50310 0.90869 1.19183 0.96628 0.92008 0.92745 1.21497 0.91252 0.99302 1.01341 1.22205 0.98274 0.97294 0.89209 1.61945 1.09226 1.15281 1.38799 1.21055 0.89674 1.01121 0.91907 1.19697 0.96469 0.93015 0.95405 1.21196 0.99855 0.95222 0.97698 1.20888 0.98991 0.99397 0.91963 1.20724 1.04726 0.90834 1.00237 1.17531 1.02359 0.87960 0.86058 1.45922 1.50962 1.06302 1.06151 1.22620 1.01063 1.01037 0.84452 1.21591 1.14375 0.91940 1.01535 1.24085 0.98542 1.00686 0.90309 1.77510 1.22941 0.87733 1.22260 1.20724 0.99681 1.01297 0.89790 1.22292 0.98299 0.87626 0.99359 1.22000 0.91394 0.99884 1.02010 0.92771 0.96092 0.91772 0.92286 0.91704 0.95492 0.89894 0.93955 0.85558 0.85047 0.85536 0.80687 0.82985 0.79432 0.84347 0.95721 0.91575 0.91356 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 22.21 24.37 -169.99 -4.14 18.07 16 4 H -0.28 -6.81 6.89 56.52 0.39 -6.42 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 7 C -0.51 -14.46 9.15 -34.44 -0.31 -14.77 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 10 C -0.10 -1.94 5.32 -26.65 -0.14 -2.08 16 11 C 0.06 0.95 5.46 -3.83 -0.02 0.93 16 12 N -0.53 -8.71 4.65 -236.11 -1.10 -9.81 16 13 C 0.09 1.19 5.12 -4.98 -0.03 1.16 16 14 C -0.04 -0.57 4.88 -104.65 -0.51 -1.09 16 15 C -0.12 -1.38 7.88 -39.55 -0.31 -1.69 16 16 C -0.09 -0.93 10.04 -39.61 -0.40 -1.33 16 17 C -0.14 -1.48 9.46 -39.41 -0.37 -1.85 16 18 C 0.15 1.93 6.69 -83.59 -0.56 1.37 16 19 N -0.32 -3.99 3.80 -10.70 -0.04 -4.03 16 20 C 0.05 0.49 10.80 -17.10 -0.18 0.31 16 21 C -0.27 -2.34 10.81 -39.99 -0.43 -2.77 16 22 C 0.05 0.51 12.03 -17.33 -0.21 0.30 16 23 N -0.29 -3.82 11.87 30.64 0.36 -3.46 16 24 C -0.09 -1.28 9.31 -39.41 -0.37 -1.64 16 25 C 0.05 0.93 5.15 -3.83 -0.02 0.91 16 26 C -0.12 -2.54 4.84 -26.65 -0.13 -2.67 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 28 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 34 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 35 H 0.13 1.31 7.94 -52.49 -0.42 0.89 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.13 0.94 6.74 -52.48 -0.35 0.59 16 38 H 0.18 1.06 7.04 -52.49 -0.37 0.69 16 39 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.14 1.98 7.70 -52.49 -0.40 1.57 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 1.10 5.74 -51.93 -0.30 0.80 16 44 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.05 1.09 3.39 -51.93 -0.18 0.92 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -33.28 354.23 -9.68 -42.96 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.62 Total: 1.10 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -4.25 Total: -22.88 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.00 Total: -44.58 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.28 -9.68 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543780098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.087 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds