Wall clock time and date at job start Tue Mar 31 2020 11:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99836 * 2 1 4 4 H 1.48497 * 109.46983 * 269.99685 * 3 2 1 5 5 H 1.48492 * 109.47135 * 29.99945 * 3 2 1 6 6 H 1.48502 * 109.46933 * 150.00300 * 3 2 1 7 7 C 1.37873 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00319 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99915 * 179.97438 * 7 2 1 10 10 C 1.53123 * 109.52341 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.27855 * 177.62671 * 10 9 7 12 12 N 1.46850 * 109.52368 * 300.82412 * 11 10 9 13 13 C 1.46895 * 110.99976 * 185.83876 * 12 11 10 14 14 C 1.50703 * 109.46979 * 169.99761 * 13 12 11 15 15 C 1.38305 * 119.96262 * 90.00144 * 14 13 12 16 16 C 1.38262 * 120.13146 * 179.97438 * 15 14 13 17 17 C 1.38132 * 120.06619 * 0.02562 * 16 15 14 18 18 C 1.38820 * 119.93570 * 359.97438 * 17 16 15 19 19 N 1.40187 * 120.06797 * 180.02562 * 18 17 16 20 20 C 1.35229 * 126.05241 * 359.97270 * 19 18 17 21 21 C 1.35319 * 107.70962 * 179.97438 * 20 19 18 22 22 C 1.39928 * 107.93260 * 359.97438 * 21 20 19 23 23 N 1.30869 * 108.24085 * 359.75933 * 22 21 20 24 24 C 1.38098 * 119.97068 * 269.98020 * 14 13 12 25 25 C 1.46846 * 111.19656 * 61.73905 * 12 11 10 26 26 C 1.53039 * 109.52572 * 298.25771 * 25 12 11 27 27 H 0.97005 * 120.00275 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.52020 * 59.87962 * 9 7 2 29 29 H 1.09006 * 109.50113 * 57.68774 * 10 9 7 30 30 H 1.08998 * 109.54131 * 297.58840 * 10 9 7 31 31 H 1.08995 * 109.45967 * 180.81083 * 11 10 9 32 32 H 1.09001 * 109.45251 * 60.83347 * 11 10 9 33 33 H 1.09003 * 109.47156 * 49.99995 * 13 12 11 34 34 H 1.08999 * 109.47599 * 289.99738 * 13 12 11 35 35 H 1.07994 * 119.93466 * 359.70405 * 15 14 13 36 36 H 1.07996 * 119.96590 * 180.02562 * 16 15 14 37 37 H 1.08006 * 120.03304 * 179.97438 * 17 16 15 38 38 H 1.07992 * 126.14147 * 359.93540 * 20 19 18 39 39 H 1.08002 * 126.03411 * 180.02562 * 21 20 19 40 40 H 1.07996 * 125.87199 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.03035 * 359.97438 * 24 14 13 42 42 H 1.09003 * 109.46041 * 58.27804 * 25 12 11 43 43 H 1.08996 * 109.46249 * 178.24154 * 25 12 11 44 44 H 1.08993 * 109.50314 * 299.23759 * 26 25 12 45 45 H 1.09004 * 109.53110 * 179.13589 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0232 -2.6372 0.0014 11 6 5.5524 -2.6312 -0.0591 12 7 5.9927 -1.9379 -1.2764 13 6 7.4496 -2.0329 -1.4386 14 6 7.8365 -1.5316 -2.8061 15 6 8.1351 -0.1942 -2.9926 16 6 8.4910 0.2694 -4.2456 17 6 8.5488 -0.6026 -5.3154 18 6 8.2497 -1.9456 -5.1314 19 7 8.3080 -2.8331 -6.2150 20 6 8.6391 -2.5153 -7.4870 21 6 8.5770 -3.6486 -8.2239 22 6 8.1960 -4.6939 -7.3753 23 7 8.0400 -4.2073 -6.1705 24 6 7.8930 -2.4083 -3.8717 25 6 5.5532 -0.5368 -1.2779 26 6 4.0241 -0.4803 -1.2539 27 1 -0.4851 0.8401 -0.0004 28 1 3.8761 -0.6779 0.8881 29 1 3.6268 -3.1647 -0.8663 30 1 3.6970 -3.1388 0.9125 31 1 5.9193 -3.6574 -0.0727 32 1 5.9482 -2.1155 0.8159 33 1 7.7601 -3.0722 -1.3313 34 1 7.9403 -1.4266 -0.6772 35 1 8.0860 0.4903 -2.1587 36 1 8.7241 1.3142 -4.3881 37 1 8.8265 -0.2398 -6.2941 38 1 8.9048 -1.5334 -7.8497 39 1 8.7855 -3.7317 -9.2803 40 1 8.0582 -5.7253 -7.6643 41 1 7.6604 -3.4527 -3.7253 42 1 5.9493 -0.0310 -0.3973 43 1 5.9208 -0.0418 -2.1767 44 1 3.6278 -0.9738 -2.1413 45 1 3.6980 0.5597 -1.2395 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543780098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:20 Heat of formation + Delta-G solvation = 94.376571 kcal Electronic energy + Delta-G solvation = -25182.884301 eV Core-core repulsion = 21780.117337 eV Total energy + Delta-G solvation = -3402.766964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.45099 -40.66375 -39.44059 -36.11001 -34.58159 -33.72386 -32.27086 -31.76848 -31.15451 -29.91393 -28.41915 -25.99304 -24.58253 -24.02606 -23.54282 -22.58489 -21.58671 -21.02413 -20.47692 -18.92452 -18.82466 -17.31837 -17.13358 -16.49899 -16.29129 -16.14162 -16.08735 -15.44492 -15.37793 -14.92136 -14.84421 -14.69459 -14.44998 -14.30710 -13.81487 -13.74061 -13.49532 -13.41867 -13.20265 -12.95076 -12.75616 -12.39465 -12.28521 -12.16059 -11.92888 -11.68980 -11.62549 -11.39619 -11.28711 -10.98296 -10.83164 -10.61949 -10.11878 -9.88941 -9.22389 -8.98456 -8.30257 -6.33693 -0.13123 0.30861 1.22646 1.28611 1.33494 1.44776 1.44856 1.86231 2.31972 2.65100 3.04924 3.17755 3.44605 3.79862 3.87911 3.98059 4.07409 4.10561 4.13536 4.20627 4.27454 4.32585 4.37197 4.41254 4.58150 4.67557 4.68801 4.70269 4.76132 4.79149 4.82007 4.92565 4.94680 4.99019 5.05683 5.16300 5.24224 5.27250 5.37588 5.50445 5.54684 5.66138 5.69842 5.76631 5.79851 6.16303 6.22230 6.24499 6.32341 6.66098 6.73338 7.31419 8.87170 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.003188 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.001435 B = 8779.942618 C = 8908.747076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.298 1.298 6 H -0.243 1.243 7 C -0.518 4.518 8 H 0.028 0.972 9 C 0.013 3.987 10 C -0.093 4.093 11 C 0.066 3.934 12 N -0.544 5.544 13 C 0.094 3.906 14 C -0.057 4.057 15 C -0.129 4.129 16 C -0.088 4.088 17 C -0.141 4.141 18 C 0.136 3.864 19 N -0.336 5.336 20 C 0.045 3.955 21 C -0.267 4.267 22 C 0.046 3.954 23 N -0.340 5.340 24 C -0.117 4.117 25 C 0.062 3.938 26 C -0.113 4.113 27 H 0.265 0.735 28 H 0.022 0.978 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.210 0.790 39 H 0.183 0.817 40 H 0.214 0.786 41 H 0.117 0.883 42 H 0.037 0.963 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.811 -0.666 -13.890 29.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.190 4.190 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.226 1.226 6 H -0.167 1.167 7 C -0.556 4.556 8 H 0.046 0.954 9 C -0.006 4.006 10 C -0.131 4.131 11 C -0.061 4.061 12 N -0.269 5.269 13 C -0.032 4.032 14 C -0.058 4.058 15 C -0.148 4.148 16 C -0.106 4.106 17 C -0.161 4.161 18 C 0.044 3.956 19 N -0.112 5.112 20 C -0.097 4.097 21 C -0.295 4.295 22 C -0.140 4.140 23 N -0.160 5.160 24 C -0.138 4.138 25 C -0.065 4.065 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.175 0.825 38 H 0.227 0.773 39 H 0.200 0.800 40 H 0.230 0.770 41 H 0.135 0.865 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 25.142 -1.049 -13.017 28.331 hybrid contribution -0.262 0.866 -0.116 0.913 sum 24.880 -0.183 -13.133 28.133 Atomic orbital electron populations 1.70069 1.08328 1.27978 1.53086 1.25961 0.95484 1.03269 0.94261 0.85770 0.79187 0.78373 0.78706 1.19233 1.22607 1.16722 1.21428 0.91811 0.92787 1.49617 0.95356 1.19145 0.93268 0.94539 0.93627 1.21401 0.94434 0.96847 1.00444 1.22081 0.95018 0.99060 0.89937 1.61845 1.11856 1.14437 1.38744 1.21073 0.87247 1.02129 0.92789 1.19696 0.97499 0.93774 0.94872 1.21429 0.99769 0.94633 0.98951 1.21299 0.97343 1.00859 0.91102 1.21108 1.03472 0.89693 1.01874 1.17839 1.02702 0.89123 0.85964 1.46069 1.51938 1.06076 1.07069 1.23331 1.00076 1.02850 0.83429 1.22029 1.13470 0.91183 1.02792 1.24694 0.97203 1.02284 0.89813 1.77459 1.25271 0.88958 1.24269 1.20662 1.01465 1.00591 0.91043 1.22121 0.94795 0.88883 1.00745 1.21846 0.94846 0.98572 0.99768 0.92635 0.95998 0.93776 0.92386 0.89370 0.94238 0.89182 0.92210 0.84198 0.81807 0.82548 0.77306 0.80016 0.76965 0.86540 0.94500 0.89938 0.93585 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 2 C 0.01 0.39 5.45 84.65 0.46 0.85 16 3 Si 0.95 45.73 24.37 68.60 1.67 47.41 16 4 H -0.27 -12.16 6.89 99.48 0.69 -11.48 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.24 -10.66 6.53 99.48 0.65 -10.01 16 7 C -0.52 -30.64 9.15 25.60 0.23 -30.41 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 9 C 0.01 0.62 1.75 -11.46 -0.02 0.60 16 10 C -0.09 -3.79 5.32 30.65 0.16 -3.63 16 11 C 0.07 2.08 5.46 86.33 0.47 2.55 16 12 N -0.54 -16.95 4.65 -900.93 -4.19 -21.14 16 13 C 0.09 2.27 5.12 85.56 0.44 2.71 16 14 C -0.06 -1.37 4.88 -19.88 -0.10 -1.47 16 15 C -0.13 -2.53 7.88 22.29 0.18 -2.35 16 16 C -0.09 -1.40 10.04 22.25 0.22 -1.18 16 17 C -0.14 -2.46 9.46 22.38 0.21 -2.24 16 18 C 0.14 3.27 6.69 38.09 0.25 3.52 16 19 N -0.34 -8.13 3.80 -187.76 -0.71 -8.84 16 20 C 0.04 0.76 10.80 83.50 0.90 1.66 16 21 C -0.27 -4.10 10.81 22.01 0.24 -3.86 16 22 C 0.05 0.90 12.03 85.25 1.03 1.92 16 23 N -0.34 -9.19 11.87 -56.97 -0.68 -9.86 16 24 C -0.12 -3.14 9.31 22.38 0.21 -2.93 16 25 C 0.06 2.07 5.15 86.33 0.44 2.51 16 26 C -0.11 -4.86 4.84 30.65 0.15 -4.71 16 27 H 0.26 15.94 8.31 -92.70 -0.77 15.16 16 28 H 0.02 1.04 7.19 -2.39 -0.02 1.02 16 29 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.09 2.37 8.01 -2.39 -0.02 2.35 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 2.01 7.93 -2.39 -0.02 2.00 16 34 H 0.06 1.25 8.07 -2.39 -0.02 1.23 16 35 H 0.14 2.32 7.94 -2.91 -0.02 2.30 16 36 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.16 1.66 6.74 -2.91 -0.02 1.64 16 38 H 0.21 1.73 7.04 -2.91 -0.02 1.71 16 39 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.12 3.51 7.70 -2.91 -0.02 3.49 16 42 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 2.49 5.74 -2.39 -0.01 2.48 16 44 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.04 1.75 3.39 -2.38 -0.01 1.74 16 Total: -1.00 -76.71 354.23 2.77 -73.93 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.90 Total: 16.12 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 5.48 Total: -36.45 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -5.28 Total: -101.01 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.67 Total: 47.41 kcal Total: -76.71 2.77 -73.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543780098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.307 kcal (2) G-P(sol) polarization free energy of solvation -76.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds