Wall clock time and date at job start Tue Mar 31 2020 09:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47328 * 119.99456 * 2 1 3 5 5 C 1.50702 * 109.47337 * 295.00261 * 4 2 1 6 6 H 1.08001 * 119.99874 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99937 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00163 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99593 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47039 * 90.00014 * 9 7 5 11 11 H 1.48502 * 109.46696 * 209.99789 * 9 7 5 12 12 H 1.48498 * 109.47160 * 329.99451 * 9 7 5 13 13 C 1.52995 * 109.47388 * 239.99561 * 2 1 3 14 14 N 1.46909 * 109.47108 * 64.99635 * 13 2 1 15 15 C 1.46895 * 110.99864 * 183.48454 * 14 13 2 16 16 H 1.08996 * 109.47521 * 348.83918 * 15 14 13 17 17 C 1.50710 * 109.46772 * 228.84286 * 15 14 13 18 18 C 1.33381 * 125.20258 * 140.00317 * 17 15 14 19 19 C 1.38422 * 114.92202 * 179.97438 * 18 17 15 20 20 C 1.33399 * 114.92019 * 359.97438 * 19 18 17 21 21 S 1.75883 * 109.59149 * 359.75912 * 20 19 18 22 22 C 1.52992 * 109.47422 * 108.84475 * 15 14 13 23 23 C 1.53008 * 109.47235 * 54.66236 * 22 15 14 24 24 C 1.53006 * 109.46968 * 294.66646 * 22 15 14 25 25 C 1.52997 * 109.47521 * 174.66377 * 22 15 14 26 26 O 1.42902 * 109.47078 * 57.35772 * 25 22 15 27 27 H 1.08996 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46809 * 300.00119 * 1 2 3 29 29 H 1.08997 * 109.47403 * 60.00117 * 1 2 3 30 30 H 1.09001 * 109.47200 * 55.00086 * 4 2 1 31 31 H 1.08998 * 109.46954 * 174.99896 * 4 2 1 32 32 H 0.97000 * 119.99577 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47145 * 305.00080 * 13 2 1 34 34 H 1.08998 * 109.47942 * 185.00111 * 13 2 1 35 35 H 1.00896 * 110.99630 * 59.52620 * 14 13 2 36 36 H 1.08000 * 122.54295 * 359.97438 * 18 17 15 37 37 H 1.08002 * 122.54502 * 180.02562 * 19 18 17 38 38 H 1.07993 * 125.20133 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.46743 * 180.02562 * 23 22 15 40 40 H 1.08997 * 109.46847 * 300.00556 * 23 22 15 41 41 H 1.09001 * 109.46438 * 60.00486 * 23 22 15 42 42 H 1.09001 * 109.47138 * 304.25757 * 24 22 15 43 43 H 1.08996 * 109.47119 * 64.25923 * 24 22 15 44 44 H 1.09006 * 109.47037 * 184.25730 * 24 22 15 45 45 H 1.08990 * 109.47445 * 297.35780 * 25 22 15 46 46 H 1.09003 * 109.47484 * 177.35569 * 25 22 15 47 47 H 0.96695 * 114.00423 * 175.02597 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9924 -0.4020 3.7284 8 7 2.6748 -1.5195 3.8513 9 14 1.4988 0.5633 5.2496 10 1 0.1712 0.0960 5.7231 11 1 2.5079 0.3525 6.3185 12 1 1.4251 2.0085 4.9165 13 6 2.0400 -0.7213 -1.2491 14 7 1.6513 0.0373 -2.4457 15 6 2.0529 -0.6684 -3.6698 16 1 2.7188 -1.4921 -3.4126 17 6 2.7686 0.2877 -4.5890 18 6 3.8462 -0.0072 -5.3176 19 6 4.3311 1.0342 -6.0898 20 6 3.6468 2.1748 -5.9888 21 16 2.3053 1.9608 -4.8717 22 6 0.8101 -1.2178 -4.3728 23 6 -0.1838 -0.0800 -4.6149 24 6 0.1575 -2.2866 -3.4937 25 6 1.2136 -1.8363 -5.7128 26 8 2.1881 -2.8578 -5.4918 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -1.7197 1.2953 31 1 3.1263 -0.7993 1.2056 32 1 2.9220 -1.8423 4.7320 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7996 -1.2056 35 1 2.0358 0.9699 -2.4232 36 1 4.3056 -0.9846 -5.3059 37 1 5.1973 0.9309 -6.7266 38 1 3.8789 3.0887 -6.5152 39 1 -1.0694 -0.4716 -5.1154 40 1 -0.4712 0.3605 -3.6603 41 1 0.2812 0.6813 -5.2413 42 1 0.8888 -3.0600 -3.2587 43 1 -0.1980 -1.8300 -2.5701 44 1 -0.6833 -2.7313 -4.0262 45 1 1.6356 -1.0648 -6.3567 46 1 0.3356 -2.2693 -6.1922 47 1 2.4344 -3.3457 -6.2895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602686355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:42 Heat of formation + Delta-G solvation = -38.659430 kcal Electronic energy + Delta-G solvation = -24670.558219 eV Core-core repulsion = 21365.173581 eV Total energy + Delta-G solvation = -3305.384637 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.166 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.52459 -37.29235 -36.59503 -35.04773 -33.02537 -31.74821 -29.83207 -27.13606 -26.86996 -25.99877 -25.92722 -24.25571 -23.00276 -22.15086 -19.49998 -19.14060 -18.69319 -17.43734 -17.03253 -16.29836 -15.69896 -15.58597 -14.99878 -14.51948 -14.34678 -13.98394 -13.81278 -13.62579 -13.12111 -12.81218 -12.70378 -12.49651 -12.33878 -12.18178 -11.98322 -11.86162 -11.80194 -11.41592 -11.35825 -11.09038 -10.81257 -10.74934 -10.72060 -10.64709 -10.61534 -10.24620 -10.11175 -10.01729 -9.63229 -9.11519 -8.93011 -8.64425 -8.45745 -8.28984 -8.08371 -5.93758 -3.94641 0.92868 1.56772 1.97178 2.68057 3.35589 3.41773 3.45150 4.17237 4.32433 4.52264 4.61971 4.87321 4.96669 5.16640 5.19660 5.40128 5.42100 5.43073 5.46856 5.53062 5.60980 5.73122 5.80296 5.84505 5.97824 6.05782 6.08635 6.16433 6.20119 6.23183 6.26132 6.38425 6.42147 6.50977 6.58518 6.62288 6.74382 7.05682 7.22475 7.24406 7.39184 7.53303 7.65403 7.74672 7.90653 8.06899 8.50972 9.11843 9.68557 11.17790 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.017517 B = 0.003376 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.092048 B = 8292.433161 C = 8887.460941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.678 5.678 15 C 0.169 3.831 16 H 0.081 0.919 17 C -0.175 4.175 18 C -0.137 4.137 19 C -0.135 4.135 20 C -0.231 4.231 21 S 0.119 5.881 22 C -0.041 4.041 23 C -0.143 4.143 24 C -0.134 4.134 25 C 0.084 3.916 26 O -0.566 6.566 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.016 0.984 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.337 0.663 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.159 0.841 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.041 0.959 47 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.194 2.440 -24.620 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.309 5.309 15 C 0.057 3.943 16 H 0.098 0.902 17 C -0.294 4.294 18 C -0.167 4.167 19 C -0.165 4.165 20 C -0.367 4.367 21 S 0.383 5.617 22 C -0.042 4.042 23 C -0.201 4.201 24 C -0.191 4.191 25 C 0.006 3.994 26 O -0.370 6.370 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.951 3.260 -23.331 23.742 hybrid contribution 2.074 -0.475 -0.313 2.150 sum -0.877 2.786 -23.644 23.824 Atomic orbital electron populations 1.21580 0.95740 1.00464 1.00085 1.21175 0.95949 0.98888 0.93944 0.92927 1.19116 0.95888 0.95555 0.90443 1.21240 1.34488 1.08235 0.90992 0.92597 1.25014 0.95362 0.95097 0.99053 1.69969 1.39165 1.21263 1.23294 0.86646 0.78198 0.80456 0.83014 1.20742 1.21358 1.19926 1.22294 0.97229 0.97780 0.89243 1.60690 1.63817 1.05509 1.00902 1.20078 0.93510 0.93028 0.87709 0.90160 1.25032 1.01193 0.97869 1.05256 1.20151 0.97162 1.00710 0.98698 1.20153 1.01767 0.92606 1.02015 1.25730 1.01597 1.02764 1.06589 1.84426 1.28261 1.07279 1.41733 1.20491 0.94918 0.95540 0.93281 1.21900 0.97605 0.97311 1.03255 1.21768 0.99671 0.97597 1.00046 1.22335 0.90522 0.89637 0.96943 1.86512 1.61676 1.51355 1.37468 0.94213 0.92891 0.93918 0.96577 0.96995 0.93148 0.91106 0.95740 0.84357 0.84304 0.84777 0.82318 0.93323 0.89959 0.92707 0.92512 0.90994 0.93549 0.93781 0.94043 0.78158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.08 -1.65 2.51 -90.62 -0.23 -1.88 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.10 4.47 -3.82 -0.02 1.08 16 14 N -0.68 -9.79 4.39 -107.95 -0.47 -10.26 16 15 C 0.17 2.18 1.67 -68.87 -0.11 2.07 16 16 H 0.08 1.19 7.20 -51.93 -0.37 0.82 16 17 C -0.18 -2.07 3.65 -36.00 -0.13 -2.21 16 18 C -0.14 -1.52 9.30 -41.21 -0.38 -1.90 16 19 C -0.13 -1.33 10.18 -41.21 -0.42 -1.75 16 20 C -0.23 -2.25 11.23 29.04 0.33 -1.92 16 21 S 0.12 1.29 19.99 -107.50 -2.15 -0.86 16 22 C -0.04 -0.47 0.46 -154.51 -0.07 -0.54 16 23 C -0.14 -1.58 7.89 37.16 0.29 -1.28 16 24 C -0.13 -1.69 7.38 37.16 0.27 -1.42 16 25 C 0.08 0.84 5.38 37.16 0.20 1.04 16 26 O -0.57 -5.66 12.49 -35.23 -0.44 -6.10 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 29 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.26 6.95 -51.93 -0.36 0.90 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.34 4.91 7.29 -39.29 -0.29 4.63 16 36 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 1.02 7.46 -51.93 -0.39 0.63 16 41 H 0.05 0.58 5.51 -51.93 -0.29 0.29 16 42 H 0.06 0.78 7.88 -51.93 -0.41 0.37 16 43 H 0.07 1.02 7.24 -51.93 -0.38 0.64 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.44 6.77 -51.93 -0.35 0.09 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.37 2.13 9.12 45.56 0.42 2.55 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -30.61 377.14 -9.45 -40.06 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.34 Total: 4.48 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -0.45 Total: -23.38 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.26 Total: -36.79 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.44 Total: -6.10 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.15 Total: -0.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.61 -9.45 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602686355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.398 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds