Wall clock time and date at job start Tue Mar 31 2020 09:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46727 * 2 1 4 4 C 1.50699 * 109.47347 * 120.00092 * 2 1 3 5 5 N 1.31790 * 119.08304 * 299.97862 * 4 2 1 6 6 C 1.32543 * 121.01192 * 179.97438 * 5 4 2 7 7 C 1.38121 * 119.19703 * 359.74355 * 6 5 4 8 8 C 1.39621 * 118.33412 * 0.52085 * 7 6 5 9 9 N 1.38534 * 120.53263 * 179.76019 * 8 7 6 10 10 C 1.46500 * 120.00102 * 359.71681 * 9 8 7 11 11 H 1.08993 * 109.47452 * 35.00358 * 10 9 8 12 12 C 1.53006 * 109.46998 * 155.00280 * 10 9 8 13 13 C 1.50703 * 109.47148 * 294.99871 * 12 10 9 14 14 H 1.07997 * 119.99578 * 0.02562 * 13 12 10 15 15 C 1.37871 * 119.99597 * 180.02562 * 13 12 10 16 16 N 1.31520 * 119.99673 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00403 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47170 * 89.99993 * 17 15 13 19 19 H 1.48503 * 109.46852 * 210.00137 * 17 15 13 20 20 H 1.48498 * 109.47273 * 330.00019 * 17 15 13 21 21 C 1.50698 * 109.46840 * 275.00107 * 10 9 8 22 22 C 1.38233 * 120.00383 * 319.72378 * 21 10 9 23 23 C 1.38238 * 120.00267 * 179.81107 * 22 21 10 24 24 C 1.38236 * 119.99482 * 0.39993 * 23 22 21 25 25 C 1.38231 * 120.00550 * 359.85822 * 24 23 22 26 26 C 1.38240 * 119.99989 * 359.95173 * 25 24 23 27 27 N 1.31746 * 119.08112 * 120.00039 * 4 2 1 28 28 H 1.09000 * 109.47448 * 60.00150 * 1 2 3 29 29 H 1.08998 * 109.46959 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47161 * 299.99660 * 1 2 3 31 31 H 1.09000 * 109.47161 * 240.00340 * 2 1 3 32 32 H 1.09003 * 109.47155 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47339 * 299.99649 * 3 2 1 34 34 H 1.09000 * 109.47022 * 60.00255 * 3 2 1 35 35 H 1.08002 * 120.40493 * 180.02562 * 6 5 4 36 36 H 1.07998 * 120.83074 * 180.25403 * 7 6 5 37 37 H 0.97002 * 119.99868 * 179.71845 * 9 8 7 38 38 H 1.09000 * 109.47314 * 55.00214 * 12 10 9 39 39 H 1.09007 * 109.46744 * 174.99835 * 12 10 9 40 40 H 0.96992 * 120.00253 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.00136 * 359.97438 * 22 21 10 42 42 H 1.07994 * 120.00023 * 180.23708 * 23 22 21 43 43 H 1.08003 * 119.99768 * 179.83629 * 24 23 22 44 44 H 1.07994 * 120.00663 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.00635 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7034 -0.2443 2.4184 6 6 2.1235 -0.8394 3.5258 7 6 2.9137 -1.9678 3.4261 8 6 3.2485 -2.4319 2.1525 9 7 4.0427 -3.5567 1.9996 10 6 4.5434 -4.2658 3.1797 11 1 3.7950 -4.2278 3.9712 12 6 4.8271 -5.7246 2.8158 13 6 3.5357 -6.4128 2.4554 14 1 2.6058 -5.8643 2.4827 15 6 3.5416 -7.7424 2.0908 16 7 2.4147 -8.3428 1.7757 17 14 5.1503 -8.6907 2.0429 18 1 5.3995 -9.3100 3.3694 19 1 5.0681 -9.7528 1.0083 20 1 6.2620 -7.7632 1.7129 21 6 5.8138 -3.6111 3.6576 22 6 6.7509 -3.1700 2.7420 23 6 7.9144 -2.5659 3.1803 24 6 8.1446 -2.4103 4.5345 25 6 7.2100 -2.8561 5.4502 26 6 6.0447 -3.4567 5.0118 27 7 2.7886 -1.7798 1.0885 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.8476 -0.4493 4.4943 36 1 3.2673 -2.4759 4.3110 37 1 4.2672 -3.8747 1.1111 38 1 5.5080 -5.7612 1.9654 39 1 5.2825 -6.2296 3.6678 40 1 2.4188 -9.2781 1.5189 41 1 6.5728 -3.2950 1.6842 42 1 8.6447 -2.2179 2.4649 43 1 9.0549 -1.9407 4.8770 44 1 7.3900 -2.7350 6.5081 45 1 5.3143 -3.8047 5.7272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164349721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:51 Heat of formation + Delta-G solvation = 60.796560 kcal Electronic energy + Delta-G solvation = -25334.877611 eV Core-core repulsion = 21930.654509 eV Total energy + Delta-G solvation = -3404.223102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68838 -39.28781 -36.76734 -35.12670 -33.51889 -32.52973 -31.23533 -30.76037 -29.79592 -28.97763 -27.09246 -25.37129 -24.04789 -23.31626 -22.35079 -21.85602 -20.69495 -19.72021 -17.57691 -17.14166 -17.04994 -16.42139 -15.33692 -15.08864 -14.88688 -14.63387 -14.59796 -14.38621 -14.05658 -13.71684 -13.43760 -13.29380 -13.19443 -12.81655 -12.72132 -12.51971 -12.11675 -11.89136 -11.67021 -11.47870 -11.39395 -11.14176 -10.97670 -10.84250 -10.82833 -10.63640 -10.29756 -10.09624 -9.90601 -9.47806 -9.32765 -8.81058 -8.76413 -8.67586 -8.48071 -7.67563 -6.16471 -4.17322 1.42206 1.51766 1.56433 1.81136 3.20841 3.29898 3.31334 3.42968 3.98279 4.23462 4.29712 4.32637 4.68062 4.99812 5.02707 5.08970 5.12240 5.15648 5.20103 5.24573 5.28787 5.37221 5.55136 5.64737 5.67208 5.68559 5.76965 5.79732 5.90016 5.92516 5.98947 6.07508 6.07778 6.15905 6.23584 6.29155 6.37903 6.59576 6.59706 6.63529 6.78116 6.87571 6.98996 7.15440 7.24888 7.56223 7.74033 8.06341 8.36148 8.69924 8.88113 9.43474 10.96276 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.009723 B = 0.004896 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.159206 B = 5717.629101 C = 7754.004541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C -0.137 4.137 4 C 0.362 3.638 5 N -0.569 5.569 6 C 0.170 3.830 7 C -0.297 4.297 8 C 0.451 3.549 9 N -0.676 5.676 10 C 0.200 3.800 11 H 0.088 0.912 12 C -0.013 4.013 13 C -0.524 4.524 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.088 4.088 22 C -0.102 4.102 23 C -0.123 4.123 24 C -0.130 4.130 25 C -0.121 4.121 26 C -0.113 4.113 27 N -0.581 5.581 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.158 0.842 36 H 0.138 0.862 37 H 0.410 0.590 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.265 0.735 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.281 15.986 2.711 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 C -0.195 4.195 4 C 0.092 3.908 5 N -0.289 5.289 6 C 0.009 3.991 7 C -0.326 4.326 8 C 0.206 3.794 9 N -0.304 5.304 10 C 0.095 3.905 11 H 0.106 0.894 12 C -0.050 4.050 13 C -0.561 4.561 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.089 4.089 22 C -0.120 4.120 23 C -0.141 4.141 24 C -0.148 4.148 25 C -0.140 4.140 26 C -0.132 4.132 27 N -0.306 5.306 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.175 0.825 36 H 0.155 0.845 37 H 0.246 0.754 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.964 16.107 2.059 16.980 hybrid contribution 1.301 -1.477 0.483 2.027 sum 6.266 14.629 2.543 16.116 Atomic orbital electron populations 1.21758 0.93381 1.02176 1.02329 1.19887 0.96327 0.95460 0.92884 1.21751 1.00784 0.94574 1.02375 1.22636 0.87955 0.87300 0.92913 1.68084 1.27639 1.34700 0.98427 1.22715 0.89472 0.89872 0.97081 1.22123 1.09361 1.03106 0.97966 1.18570 0.85815 0.85950 0.89072 1.44614 1.50602 1.25084 1.10108 1.20085 0.90711 0.92545 0.87162 0.89389 1.19866 0.98730 0.89017 0.97402 1.20963 0.92930 0.95651 1.46592 0.90656 1.24975 0.96010 0.97538 0.94461 1.69901 1.25993 1.11781 1.45655 0.86856 0.84612 0.80101 0.78195 1.20153 1.21244 1.19007 1.20642 0.97174 0.97520 0.93573 1.20962 0.93486 0.97925 0.99673 1.21096 0.97415 0.99866 0.95736 1.21058 0.99279 1.01075 0.93390 1.21061 0.94386 0.99232 0.99273 1.21032 0.97806 0.99267 0.95052 1.67765 1.17952 1.11646 1.33204 0.92096 0.92732 0.91525 0.89052 0.93042 0.92097 0.91528 0.82509 0.84466 0.75353 0.95681 0.94965 0.92543 0.86373 0.86552 0.86628 0.86357 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.09 37.16 0.34 -1.28 16 2 C -0.03 -0.33 3.25 -91.77 -0.30 -0.63 16 3 C -0.14 -1.50 9.09 37.16 0.34 -1.17 16 4 C 0.36 5.93 6.34 -157.24 -1.00 4.93 16 5 N -0.57 -9.03 9.80 -10.81 -0.11 -9.13 16 6 C 0.17 2.51 11.29 -17.29 -0.20 2.31 16 7 C -0.30 -4.79 9.24 -39.11 -0.36 -5.15 16 8 C 0.45 8.16 7.68 -154.78 -1.19 6.97 16 9 N -0.68 -12.28 4.19 -54.91 -0.23 -12.51 16 10 C 0.20 3.60 1.83 -69.08 -0.13 3.47 16 11 H 0.09 1.60 6.36 -51.93 -0.33 1.27 16 12 C -0.01 -0.27 3.56 -27.88 -0.10 -0.37 16 13 C -0.52 -13.81 9.39 -34.44 -0.32 -14.13 16 14 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -26.68 13.96 55.43 0.77 -25.90 16 17 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 21 C -0.09 -1.38 4.85 -104.62 -0.51 -1.89 16 22 C -0.10 -1.55 9.32 -39.58 -0.37 -1.92 16 23 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 24 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 25 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 26 C -0.11 -1.58 9.67 -39.58 -0.38 -1.97 16 27 N -0.58 -10.60 10.34 -9.97 -0.10 -10.70 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 31 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 35 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.14 2.03 6.34 -52.49 -0.33 1.70 16 37 H 0.41 7.64 8.73 -40.82 -0.36 7.28 16 38 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 39 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.12 1.79 7.73 -52.49 -0.41 1.39 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -30.60 373.89 -11.00 -41.60 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.83 Total: 9.84 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -5.46 Total: -14.84 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.33 Total: -58.26 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.60 -11.00 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164349721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.396 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds