Wall clock time and date at job start Tue Mar 31 2020 10:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47070 * 2 1 4 4 N 1.46905 * 109.47074 * 180.84012 * 3 2 1 5 5 C 1.46899 * 110.99920 * 293.05141 * 4 3 2 6 6 C 1.50699 * 109.46951 * 160.01842 * 5 4 3 7 7 H 1.07996 * 120.00320 * 4.55675 * 6 5 4 8 8 C 1.37875 * 119.99759 * 184.55017 * 6 5 4 9 9 N 1.31518 * 120.00626 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00001 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47125 * 60.00015 * 10 8 6 12 12 H 1.48505 * 109.47412 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47401 * 300.00298 * 10 8 6 14 14 C 1.46905 * 110.99934 * 169.10016 * 4 3 2 15 15 C 1.50695 * 109.46797 * 293.95534 * 14 4 3 16 16 C 1.34209 * 126.52874 * 260.02420 * 15 14 4 17 17 N 1.36854 * 109.95436 * 180.02562 * 16 15 14 18 18 C 1.46500 * 125.01325 * 179.97438 * 17 16 15 19 19 C 1.37484 * 109.96442 * 0.24108 * 17 16 15 20 20 C 1.39343 * 133.23825 * 179.76435 * 19 17 16 21 21 C 1.36342 * 120.24545 * 179.97438 * 20 19 17 22 22 C 1.40232 * 120.66358 * 0.02562 * 21 20 19 23 23 C 1.43200 * 119.98053 * 179.97438 * 22 21 20 24 24 N 6.30900 * 54.48859 * 348.92759 * 2 1 3 25 25 C 1.39185 * 120.03812 * 359.56653 * 22 21 20 26 26 C 1.39309 * 119.38626 * 0.66288 * 25 22 21 27 27 H 1.08996 * 109.47155 * 59.99685 * 1 2 3 28 28 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47117 * 299.99937 * 1 2 3 30 30 H 1.08998 * 109.47117 * 240.00063 * 2 1 3 31 31 H 1.09007 * 109.46967 * 119.99848 * 2 1 3 32 32 H 1.09007 * 109.47409 * 60.84373 * 3 2 1 33 33 H 1.09002 * 109.47572 * 300.83775 * 3 2 1 34 34 H 1.09003 * 109.47480 * 280.02084 * 5 4 3 35 35 H 1.09004 * 109.46941 * 40.01872 * 5 4 3 36 36 H 0.96991 * 120.00468 * 179.97438 * 9 8 6 37 37 H 1.08992 * 109.46548 * 173.95246 * 14 4 3 38 38 H 1.09001 * 109.46742 * 53.95339 * 14 4 3 39 39 H 1.07996 * 125.02403 * 359.97438 * 16 15 14 40 40 H 1.08999 * 109.47898 * 90.02067 * 18 17 16 41 41 H 1.09001 * 109.47027 * 330.01679 * 18 17 16 42 42 H 1.09008 * 109.46761 * 210.02372 * 18 17 16 43 43 H 1.07997 * 119.88015 * 0.02562 * 20 19 17 44 44 H 1.07996 * 119.66849 * 179.97438 * 21 20 19 45 45 H 1.08004 * 120.30474 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 -0.0203 5 6 4.0527 0.8994 1.2316 6 6 5.4764 0.4574 1.0108 7 1 5.9559 0.6357 0.0597 8 6 6.1669 -0.1745 2.0232 9 7 5.5830 -0.3920 3.1814 10 14 7.9319 -0.7217 1.7498 11 1 8.7717 0.4593 1.4256 12 1 8.4454 -1.3714 2.9825 13 1 7.9817 -1.6886 0.6238 14 6 4.0318 2.7905 -0.2803 15 6 3.6539 3.2153 -1.6759 16 6 4.4417 3.1823 -2.7619 17 7 3.7552 3.6460 -3.8512 18 6 4.3016 3.7523 -5.2063 19 6 2.4791 4.0028 -3.4848 20 6 1.3948 4.5246 -4.1876 21 6 0.2213 4.7861 -3.5446 22 6 0.0871 4.5358 -2.1713 23 6 -1.1520 4.8165 -1.5106 24 7 -2.1346 5.0399 -0.9863 25 6 1.1546 4.0068 -1.4519 26 6 2.3561 3.7435 -2.1059 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6891 1.9520 0.8975 33 1 1.6645 1.9607 -0.8824 34 1 4.0266 1.6689 2.0032 35 1 3.4525 0.0465 1.5486 36 1 6.0687 -0.8369 3.8934 37 1 5.1174 2.7838 -0.1839 38 1 3.6073 3.4900 0.4399 39 1 5.4663 2.8411 -2.7742 40 1 4.1162 2.8242 -5.7469 41 1 5.3752 3.9328 -5.1520 42 1 3.8201 4.5793 -5.7283 43 1 1.4841 4.7218 -5.2456 44 1 -0.6129 5.1909 -4.0983 45 1 1.0561 3.8127 -0.3940 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237470281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:26 Heat of formation + Delta-G solvation = 92.080230 kcal Electronic energy + Delta-G solvation = -25466.826639 eV Core-core repulsion = 22063.960098 eV Total energy + Delta-G solvation = -3402.866540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47343 -37.86265 -37.14162 -35.90328 -33.46058 -32.98141 -31.84142 -30.74654 -29.42981 -27.90529 -26.87536 -25.38566 -23.59421 -23.05179 -22.31614 -21.44213 -20.21185 -19.07306 -18.30437 -16.88462 -16.49149 -16.18752 -15.50733 -14.90969 -14.70092 -14.43053 -14.25132 -14.09889 -13.90712 -13.79928 -13.69903 -13.39776 -12.84518 -12.72994 -12.67077 -12.61490 -12.40195 -12.14465 -11.88855 -11.76801 -11.47546 -11.23670 -11.10612 -11.02085 -10.78975 -10.63577 -10.52669 -10.26111 -10.07798 -9.66594 -9.50491 -9.16096 -8.38112 -8.21264 -7.59174 -7.14409 -5.98869 -3.99838 0.86016 1.16464 2.70214 2.72136 2.76802 3.04561 3.33536 3.38568 3.40299 3.92861 3.95511 4.44675 4.53116 4.57188 4.77224 4.94123 4.99279 5.08000 5.17424 5.23397 5.33001 5.36607 5.56369 5.57793 5.62688 5.66647 5.75997 5.86374 5.97205 6.02320 6.09818 6.21878 6.27892 6.34942 6.43299 6.45188 6.52203 6.65074 6.78448 6.81239 6.92570 7.14661 7.26539 7.31562 7.40893 7.54623 7.85743 8.18134 8.28640 8.60310 9.07279 9.63759 11.11612 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.004198 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.754936 B = 6668.884483 C = 8165.327078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.047 3.953 4 N -0.529 5.529 5 C 0.188 3.812 6 C -0.502 4.502 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.129 3.871 15 C -0.129 4.129 16 C 0.058 3.942 17 N -0.484 5.484 18 C 0.079 3.921 19 C 0.122 3.878 20 C -0.130 4.130 21 C -0.059 4.059 22 C -0.073 4.073 23 C 0.266 3.734 24 N -0.437 5.437 25 C -0.004 4.004 26 C -0.105 4.105 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.016 0.984 33 H 0.071 0.929 34 H -0.012 1.012 35 H 0.039 0.961 36 H 0.261 0.739 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.173 0.827 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 9.415 -17.087 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.081 4.081 4 N -0.253 5.253 5 C 0.064 3.936 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.203 1.203 14 C 0.001 3.999 15 C -0.135 4.135 16 C -0.066 4.066 17 N -0.167 5.167 18 C -0.063 4.063 19 C 0.012 3.988 20 C -0.150 4.150 21 C -0.081 4.081 22 C -0.078 4.078 23 C -0.048 4.048 24 N -0.112 5.112 25 C -0.025 4.025 26 C -0.111 4.111 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.089 0.911 34 H 0.006 0.994 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.190 0.810 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.167 9.370 -16.774 20.180 hybrid contribution 1.174 -0.038 0.355 1.227 sum -4.993 9.333 -16.420 19.536 Atomic orbital electron populations 1.21739 0.96846 1.00949 1.01031 1.21521 0.93869 0.97389 1.02983 1.22343 0.89966 0.96544 0.99247 1.62170 1.04606 1.19508 1.39036 1.19822 0.95483 0.94450 0.83877 1.21121 0.96982 1.37224 0.98744 0.92036 1.24976 0.98254 0.96189 0.95187 1.69941 1.37181 1.43057 1.03756 0.86611 0.84862 0.78840 0.77344 1.20359 1.21484 1.20291 1.20332 1.01055 0.89759 0.88760 1.20500 0.91386 1.05160 0.96493 1.21715 0.98641 1.01685 0.84554 1.43810 1.09640 1.54605 1.08625 1.21945 1.00329 1.02915 0.81071 1.18391 0.86134 1.00228 0.93997 1.19539 0.91239 1.04788 0.99466 1.20338 0.97090 0.98567 0.92056 1.15618 0.88511 1.10379 0.93325 1.25689 0.92788 0.93083 0.93274 1.81224 1.11458 1.10155 1.08403 1.20696 0.89803 0.92415 0.99586 1.18985 0.94513 1.05167 0.92421 0.93357 0.93154 0.93301 0.91732 0.91325 0.96615 0.91052 0.99434 0.94344 0.92949 0.89179 0.95310 0.80978 0.91170 0.89765 0.90277 0.85756 0.85210 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.12 -2.12 5.91 -26.73 -0.16 -2.28 16 3 C 0.05 0.86 4.00 -3.82 -0.02 0.84 16 4 N -0.53 -10.89 4.41 -237.51 -1.05 -11.94 16 5 C 0.19 4.73 4.61 -4.98 -0.02 4.71 16 6 C -0.50 -13.55 8.62 -34.44 -0.30 -13.85 16 7 H 0.06 1.62 7.68 -52.49 -0.40 1.22 16 8 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 9 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 10 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.13 2.33 5.32 -4.98 -0.03 2.31 16 15 C -0.13 -1.94 5.40 -102.69 -0.55 -2.50 16 16 C 0.06 0.74 11.20 -16.73 -0.19 0.55 16 17 N -0.48 -5.18 3.17 -121.74 -0.39 -5.57 16 18 C 0.08 0.50 11.02 59.85 0.66 1.16 16 19 C 0.12 1.42 6.80 -83.94 -0.57 0.85 16 20 C -0.13 -1.21 9.85 -39.85 -0.39 -1.60 16 21 C -0.06 -0.56 9.66 -39.52 -0.38 -0.94 16 22 C -0.07 -0.86 5.73 -106.87 -0.61 -1.47 16 23 C 0.27 3.49 15.32 -22.48 -0.34 3.14 16 24 N -0.44 -6.59 18.54 41.84 0.78 -5.82 16 25 C 0.00 -0.05 8.00 -38.83 -0.31 -0.36 16 26 C -0.11 -1.45 5.29 -105.16 -0.56 -2.00 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.37 6.32 -51.93 -0.33 1.04 16 32 H 0.02 0.29 8.08 -51.92 -0.42 -0.13 16 33 H 0.07 1.18 3.85 -51.93 -0.20 0.98 16 34 H -0.01 -0.33 8.00 -51.93 -0.42 -0.74 16 35 H 0.04 1.04 5.94 -51.93 -0.31 0.73 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 1.71 7.35 -51.93 -0.38 1.33 16 38 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 42 H 0.08 0.37 8.04 -51.92 -0.42 -0.05 16 43 H 0.12 0.81 8.02 -52.49 -0.42 0.39 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.77 7.08 -52.48 -0.37 1.40 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -31.37 374.10 -9.41 -40.78 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.60 Total: -1.79 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.50 Total: -11.81 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.08 Total: -48.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.37 -9.41 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237470281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.860 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds