Wall clock time and date at job start Tue Mar 31 2020 10:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47110 * 2 1 4 4 C 1.53005 * 109.47110 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47029 * 186.54451 * 4 3 2 6 6 C 1.36943 * 120.00213 * 277.12247 * 5 4 3 7 7 H 1.08001 * 119.99679 * 357.62218 * 6 5 4 8 8 C 1.38812 * 120.00212 * 177.62335 * 6 5 4 9 9 N 1.31618 * 119.99721 * 7.45295 * 8 6 5 10 10 Si 1.86794 * 119.99888 * 187.45865 * 8 6 5 11 11 H 1.48499 * 109.47308 * 59.99665 * 10 8 6 12 12 H 1.48505 * 109.47261 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47162 * 299.99503 * 10 8 6 14 14 C 1.46498 * 120.00237 * 97.12495 * 5 4 3 15 15 C 1.50701 * 109.47472 * 265.50825 * 14 5 4 16 16 C 1.34200 * 126.53562 * 263.95571 * 15 14 5 17 17 N 1.36842 * 109.96109 * 179.97438 * 16 15 14 18 18 C 1.46501 * 125.01801 * 179.97438 * 17 16 15 19 19 C 1.37493 * 109.96368 * 0.23927 * 17 16 15 20 20 C 1.39342 * 133.24233 * 179.76143 * 19 17 16 21 21 C 1.36341 * 120.24584 * 179.97438 * 20 19 17 22 22 C 1.40227 * 120.66177 * 0.02562 * 21 20 19 23 23 C 1.43208 * 119.97872 * 179.97438 * 22 21 20 24 24 N 4.85963 * 73.22989 * 97.10101 * 2 1 3 25 25 C 1.39184 * 120.04145 * 359.56039 * 22 21 20 26 26 C 1.39303 * 119.38264 * 0.66848 * 25 22 21 27 27 H 1.08998 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47256 * 300.00568 * 1 2 3 29 29 H 1.09001 * 109.46293 * 60.00157 * 1 2 3 30 30 H 1.09003 * 109.47135 * 239.99647 * 2 1 3 31 31 H 1.08998 * 109.47022 * 119.99838 * 2 1 3 32 32 H 1.08999 * 109.47485 * 59.99329 * 3 2 1 33 33 H 1.09011 * 109.47339 * 299.99707 * 3 2 1 34 34 H 1.08998 * 109.47161 * 66.54297 * 4 3 2 35 35 H 1.08997 * 109.46726 * 306.54215 * 4 3 2 36 36 H 0.97001 * 119.99440 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47559 * 145.50528 * 14 5 4 38 38 H 1.09002 * 109.46990 * 25.50825 * 14 5 4 39 39 H 1.08000 * 125.01775 * 359.96835 * 16 15 14 40 40 H 1.09005 * 109.47052 * 90.02885 * 18 17 16 41 41 H 1.08998 * 109.47463 * 330.02281 * 18 17 16 42 42 H 1.08997 * 109.47093 * 210.01993 * 18 17 16 43 43 H 1.07998 * 119.87963 * 0.02562 * 20 19 17 44 44 H 1.08003 * 119.66605 * 179.97438 * 21 20 19 45 45 H 1.08004 * 120.30377 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0585 2.8146 0.1568 6 6 4.1476 3.6390 -0.9331 7 1 3.8944 3.2659 -1.9145 8 6 4.5634 4.9541 -0.7765 9 7 5.0113 5.3682 0.3898 10 14 4.4870 6.1360 -2.2209 11 1 3.0825 6.2569 -2.6879 12 1 4.9834 7.4696 -1.7961 13 1 5.3338 5.6215 -3.3269 14 6 4.4515 3.3050 1.4801 15 6 3.2869 4.0174 2.1183 16 6 3.0573 5.3395 2.1099 17 7 1.9030 5.6175 2.7903 18 6 1.3434 6.9575 2.9842 19 6 1.3492 4.4542 3.2703 20 6 0.2045 4.1783 4.0154 21 6 -0.1012 2.8935 4.3542 22 6 0.7281 1.8335 3.9606 23 6 0.3933 0.4896 4.3251 24 7 0.1279 -0.5752 4.6173 25 6 1.8718 2.0857 3.2086 26 6 2.1886 3.3981 2.8655 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9564 -0.8901 34 1 3.9330 1.0335 -0.9436 35 1 3.9337 0.8305 0.8248 36 1 5.3014 6.2873 0.4993 37 1 5.2883 3.9960 1.3778 38 1 4.7497 2.4635 2.1056 39 1 3.6901 6.0755 1.6362 40 1 0.6672 7.1913 2.1618 41 1 2.1514 7.6886 3.0094 42 1 0.7950 6.9895 3.9256 43 1 -0.4434 4.9850 4.3249 44 1 -0.9906 2.6904 4.9323 45 1 2.5137 1.2725 2.9035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237473541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:48 Heat of formation + Delta-G solvation = 118.863029 kcal Electronic energy + Delta-G solvation = -26567.752465 eV Core-core repulsion = 23166.047314 eV Total energy + Delta-G solvation = -3401.705151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.74832 -37.39204 -36.48215 -35.53528 -34.19606 -32.37791 -31.26014 -30.25202 -28.84028 -27.88644 -26.97478 -24.76199 -23.63968 -22.50475 -21.62829 -21.07034 -20.17227 -18.91690 -17.86550 -16.97978 -16.12980 -15.51583 -15.05682 -14.88348 -14.69679 -14.18435 -13.73313 -13.54973 -13.51868 -13.47767 -13.37245 -13.24474 -12.55570 -12.36228 -12.30255 -12.19112 -12.03293 -11.92134 -11.67322 -11.54942 -11.24123 -10.85638 -10.78249 -10.65412 -10.63283 -10.46887 -10.36453 -10.16373 -9.98556 -9.85577 -9.47084 -8.92584 -8.71319 -7.59010 -6.97260 -6.77612 -5.55908 -3.19591 1.34870 1.70842 3.00819 3.30844 3.36072 3.36664 3.40641 3.42652 3.71792 4.33070 4.39324 4.46547 5.03837 5.06023 5.24851 5.26827 5.40880 5.43973 5.47194 5.61177 5.67549 5.67868 5.79155 5.82688 5.88861 6.03354 6.16308 6.23979 6.35721 6.39841 6.40809 6.45631 6.50779 6.61243 6.66918 6.72080 6.75298 6.88638 7.01945 7.14115 7.22903 7.36830 7.60459 7.63868 7.85144 7.86341 8.08247 8.13907 8.57114 9.27541 9.85806 10.24204 11.19914 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.006216 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.058569 B = 4503.694863 C = 6024.005782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.145 4.145 4 C 0.149 3.851 5 N -0.595 5.595 6 C -0.197 4.197 7 H 0.073 0.927 8 C -0.021 4.021 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.192 3.808 15 C -0.126 4.126 16 C 0.068 3.932 17 N -0.493 5.493 18 C 0.083 3.917 19 C 0.107 3.893 20 C -0.134 4.134 21 C -0.072 4.072 22 C -0.090 4.090 23 C 0.274 3.726 24 N -0.453 5.453 25 C 0.001 3.999 26 C -0.107 4.107 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.247 0.753 37 H 0.159 0.841 38 H 0.007 0.993 39 H 0.199 0.801 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 1.498 5.268 8.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.185 4.185 4 C 0.023 3.977 5 N -0.314 5.314 6 C -0.326 4.326 7 H 0.091 0.909 8 C -0.212 4.212 9 N -0.574 5.574 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.067 3.933 15 C -0.133 4.133 16 C -0.054 4.054 17 N -0.176 5.176 18 C -0.059 4.059 19 C -0.003 4.003 20 C -0.155 4.155 21 C -0.093 4.093 22 C -0.096 4.096 23 C -0.040 4.040 24 N -0.130 5.130 25 C -0.021 4.021 26 C -0.113 4.113 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.175 0.825 38 H 0.026 0.974 39 H 0.215 0.785 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.596 0.352 5.682 8.714 hybrid contribution -0.525 1.148 -0.921 1.563 sum -7.121 1.501 4.761 8.697 Atomic orbital electron populations 1.21737 0.96787 1.00451 1.01532 1.21498 0.95127 0.98490 1.00831 1.22389 0.99205 0.94357 1.02574 1.20858 0.91596 0.86822 0.98467 1.44293 1.73844 1.08604 1.04624 1.19482 1.33686 0.91678 0.87739 0.90906 1.24585 1.02595 0.97103 0.96919 1.69503 1.50719 1.15788 1.21365 0.86191 0.77585 0.80373 0.81730 1.21709 1.21611 1.21310 1.20652 0.95742 0.95476 0.81439 1.21469 0.98341 0.92354 1.01165 1.23405 0.86355 0.99873 0.95795 1.44293 1.22244 1.04571 1.46534 1.21793 0.99726 0.82682 1.01729 1.18530 0.95916 0.86710 0.99166 1.19470 0.96586 0.96488 1.02927 1.20163 0.98469 0.90811 0.99861 1.15584 0.99989 0.85332 1.08661 1.25806 0.92832 0.92746 0.92585 1.81154 1.09353 1.11670 1.10811 1.20504 0.93516 0.95713 0.92345 1.19390 0.97796 0.91361 1.02758 0.93753 0.93021 0.93170 0.92860 0.92945 0.91164 0.92907 0.94426 0.94274 0.93996 0.82538 0.97446 0.78516 0.91992 0.90175 0.91008 0.86607 0.86060 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.04 16 3 C -0.15 -2.66 5.49 -26.73 -0.15 -2.81 16 4 C 0.15 2.93 5.73 -4.04 -0.02 2.91 16 5 N -0.59 -13.45 2.54 -174.61 -0.44 -13.89 16 6 C -0.20 -4.84 9.78 -15.06 -0.15 -4.98 16 7 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 8 C -0.02 -0.51 5.35 -17.43 -0.09 -0.61 16 9 N -0.92 -21.80 5.97 55.49 0.33 -21.47 16 10 Si 0.91 20.01 29.56 -169.99 -5.02 14.99 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.19 4.22 5.64 -5.19 -0.03 4.20 16 15 C -0.13 -2.60 5.78 -102.69 -0.59 -3.19 16 16 C 0.07 1.33 10.14 -16.74 -0.17 1.17 16 17 N -0.49 -8.25 3.17 -121.75 -0.39 -8.64 16 18 C 0.08 0.99 11.02 59.85 0.66 1.65 16 19 C 0.11 1.81 6.80 -83.93 -0.57 1.23 16 20 C -0.13 -1.87 9.85 -39.85 -0.39 -2.26 16 21 C -0.07 -0.97 9.66 -39.52 -0.38 -1.35 16 22 C -0.09 -1.38 5.73 -106.87 -0.61 -1.99 16 23 C 0.27 4.35 15.32 -22.48 -0.34 4.01 16 24 N -0.45 -7.83 18.53 41.82 0.78 -7.05 16 25 C 0.00 0.01 7.89 -38.83 -0.31 -0.30 16 26 C -0.11 -1.98 5.41 -105.16 -0.57 -2.55 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.36 4.83 -51.93 -0.25 1.11 16 33 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 34 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.04 0.72 7.77 -51.93 -0.40 0.32 16 36 H 0.25 5.72 7.99 -40.82 -0.33 5.39 16 37 H 0.16 3.81 4.95 -67.15 -0.33 3.48 16 38 H 0.01 0.15 7.79 -51.93 -0.40 -0.25 16 39 H 0.20 4.11 5.36 -52.49 -0.28 3.83 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 42 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 43 H 0.12 1.30 8.02 -52.49 -0.42 0.88 16 44 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 45 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -25.76 368.46 -9.40 -35.16 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.69 Total: 4.05 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -3.51 Total: -8.70 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.28 Total: -51.05 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -25.76 -9.40 -35.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237473541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.018 kcal (2) G-P(sol) polarization free energy of solvation -25.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds