Wall clock time and date at job start Tue Mar 31 2020 10:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.47079 * 2 1 4 4 N 1.46900 * 109.46932 * 179.53151 * 3 2 1 5 5 C 1.46897 * 111.00294 * 288.07295 * 4 3 2 6 6 C 1.50700 * 109.46982 * 160.35596 * 5 4 3 7 7 H 1.07992 * 120.00017 * 4.66038 * 6 5 4 8 8 C 1.37882 * 119.99859 * 184.65697 * 6 5 4 9 9 N 1.31512 * 119.99861 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99872 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47221 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47213 * 120.00121 * 10 8 6 13 13 H 1.48504 * 109.46714 * 239.99515 * 10 8 6 14 14 C 1.46898 * 110.99685 * 164.11818 * 4 3 2 15 15 C 1.50699 * 109.47234 * 293.95492 * 14 4 3 16 16 C 1.38350 * 119.55354 * 95.02492 * 15 14 4 17 17 C 1.38713 * 119.36028 * 179.97438 * 16 15 14 18 18 C 1.38489 * 118.49908 * 359.74053 * 17 16 15 19 19 C 1.39262 * 119.07421 * 0.50164 * 18 17 16 20 20 C 1.48368 * 119.72445 * 179.77133 * 19 18 17 21 21 C 1.39312 * 119.72054 * 179.72433 * 20 19 18 22 22 C 1.38440 * 119.06493 * 179.97438 * 21 20 19 23 23 C 1.38758 * 118.50397 * 359.97438 * 22 21 20 24 24 C 1.38295 * 119.36265 * 0.25612 * 23 22 21 25 25 N 1.31730 * 120.88920 * 359.44974 * 24 23 22 26 26 N 1.31690 * 119.55706 * 274.99932 * 15 14 4 27 27 H 1.08997 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47551 * 300.00295 * 1 2 3 29 29 H 1.09007 * 109.46746 * 60.00097 * 1 2 3 30 30 H 1.08997 * 109.47660 * 240.00457 * 2 1 3 31 31 H 1.08995 * 109.47059 * 120.00079 * 2 1 3 32 32 H 1.09001 * 109.46851 * 59.53694 * 3 2 1 33 33 H 1.08992 * 109.47077 * 299.53717 * 3 2 1 34 34 H 1.09005 * 109.46921 * 280.35812 * 5 4 3 35 35 H 1.08999 * 109.47160 * 40.35299 * 5 4 3 36 36 H 0.97006 * 120.00041 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47406 * 173.95514 * 14 4 3 38 38 H 1.09005 * 109.47246 * 53.95343 * 14 4 3 39 39 H 1.08004 * 120.32264 * 359.95205 * 16 15 14 40 40 H 1.07992 * 120.74708 * 179.97438 * 17 16 15 41 41 H 1.08002 * 120.45808 * 180.24321 * 18 17 16 42 42 H 1.07991 * 120.46927 * 359.97125 * 21 20 19 43 43 H 1.07997 * 120.75171 * 180.02562 * 22 21 20 44 44 H 1.08009 * 120.31684 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.55596 * 179.74506 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0113 5 6 4.0254 1.0207 1.3202 6 6 5.4558 0.5695 1.1741 7 1 5.9573 0.6640 0.2224 8 6 6.1243 0.0360 2.2557 9 7 5.5137 -0.0785 3.4148 10 14 7.8976 -0.5226 2.0748 11 1 8.3508 -0.2875 0.6804 12 1 8.7566 0.2457 3.0113 13 1 7.9947 -1.9708 2.3890 14 6 4.0383 2.7606 -0.3635 15 6 3.6908 3.0513 -1.8008 16 6 2.5567 3.7879 -2.0931 17 6 2.2410 4.0535 -3.4174 18 6 3.0823 3.5724 -4.4067 19 6 4.2044 2.8335 -4.0404 20 6 5.1128 2.3069 -5.0886 21 6 6.2385 1.5726 -4.7218 22 6 7.0765 1.0872 -5.7110 23 6 6.7601 1.3521 -7.0358 24 6 5.6288 2.0921 -7.3279 25 7 4.8453 2.5374 -6.3671 26 7 4.4709 2.6013 -2.7615 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6699 1.9588 0.8858 33 1 1.6835 1.9540 -0.8940 34 1 3.9777 1.8579 2.0166 35 1 3.4215 0.1969 1.7007 36 1 5.9839 -0.4542 4.1757 37 1 5.1217 2.7646 -0.2437 38 1 3.5989 3.5245 0.2781 39 1 1.9231 4.1522 -1.2979 40 1 1.3610 4.6259 -3.6711 41 1 2.8688 3.7641 -5.4479 42 1 6.4543 1.3848 -3.6805 43 1 7.9563 0.5144 -5.4574 44 1 7.3937 0.9878 -7.8310 45 1 5.3819 2.3037 -8.3578 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237832027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:24 Heat of formation + Delta-G solvation = 70.147105 kcal Electronic energy + Delta-G solvation = -25037.770181 eV Core-core repulsion = 21633.952549 eV Total energy + Delta-G solvation = -3403.817632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56935 -39.52564 -37.01760 -33.35765 -33.02598 -32.70824 -32.41300 -31.54329 -29.92570 -27.25313 -26.59048 -24.62363 -24.10035 -23.39203 -21.96995 -21.86077 -20.99235 -19.67248 -17.52598 -16.56967 -16.35481 -16.01337 -15.86942 -15.40210 -15.04721 -14.74482 -14.41798 -14.33366 -13.98741 -13.85654 -13.48856 -13.34317 -13.02661 -12.90040 -12.47266 -12.33167 -11.95390 -11.81569 -11.60204 -11.42057 -11.18617 -10.94670 -10.73194 -10.56209 -10.44419 -10.13835 -10.04643 -9.84555 -9.73981 -9.62815 -9.40448 -9.15598 -9.06599 -8.38474 -8.30087 -7.23831 -5.98131 -3.98113 0.49303 1.23221 1.44710 1.71482 3.34140 3.41661 3.47528 3.61616 3.75825 4.17527 4.47783 4.59475 4.71413 4.80264 4.88102 4.99963 5.04920 5.12815 5.21105 5.31729 5.37131 5.37978 5.48204 5.56700 5.62657 5.78276 5.81318 5.86812 5.93650 5.99821 6.05367 6.15147 6.17184 6.26199 6.30811 6.33973 6.36324 6.51226 6.63670 6.71190 6.85164 6.86228 7.24428 7.34238 7.83938 7.88218 8.12927 8.20062 8.26465 8.57732 9.10957 9.65775 11.12581 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.004458 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.012713 B = 6279.313728 C = 8246.274238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.051 3.949 4 N -0.525 5.525 5 C 0.192 3.808 6 C -0.500 4.500 7 H 0.066 0.934 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.108 3.892 15 C 0.159 3.841 16 C -0.163 4.163 17 C -0.083 4.083 18 C -0.143 4.143 19 C 0.159 3.841 20 C 0.170 3.830 21 C -0.126 4.126 22 C -0.080 4.080 23 C -0.172 4.172 24 C 0.095 3.905 25 N -0.476 5.476 26 N -0.446 5.446 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.058 0.942 34 H -0.011 1.011 35 H 0.039 0.961 36 H 0.259 0.741 37 H 0.101 0.899 38 H 0.039 0.961 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.153 0.847 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 6.323 -17.471 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.077 4.077 4 N -0.250 5.250 5 C 0.068 3.932 6 C -0.539 4.539 7 H 0.084 0.916 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.212 1.212 14 C -0.020 4.020 15 C 0.019 3.981 16 C -0.184 4.184 17 C -0.109 4.109 18 C -0.164 4.164 19 C 0.022 3.978 20 C 0.034 3.966 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.192 4.192 24 C -0.064 4.064 25 N -0.186 5.186 26 N -0.156 5.156 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.007 0.993 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.057 0.943 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.373 5.914 -17.616 19.090 hybrid contribution 0.653 0.158 0.589 0.893 sum -3.720 6.073 -17.027 18.456 Atomic orbital electron populations 1.21736 0.96741 1.01040 1.00984 1.21484 0.93903 0.97167 1.03078 1.22153 0.89854 0.96662 0.99047 1.62086 1.04910 1.23664 1.34338 1.19816 0.95968 0.95065 0.82382 1.21245 0.96457 1.39726 0.96439 0.91565 1.24969 0.98296 0.96116 0.95248 1.69967 1.36942 1.46212 1.01018 0.86484 0.84864 0.78215 0.78145 1.19590 1.21232 1.21154 1.20911 1.02856 0.91230 0.87049 1.21377 0.89845 0.91198 0.95724 1.22147 0.98414 1.00485 0.97308 1.21495 0.98909 0.97974 0.92534 1.22033 0.94914 0.98432 1.00991 1.19248 0.92896 0.95888 0.89744 1.19324 0.92722 0.95134 0.89395 1.22352 0.93948 0.96095 1.02217 1.21656 0.99088 0.97285 0.92601 1.22210 0.99052 1.00472 0.97452 1.22623 0.91021 0.94462 0.98267 1.67424 1.30814 1.20339 0.99995 1.67327 1.31061 1.18217 0.98982 0.93074 0.93148 0.93441 0.91828 0.91180 0.95917 0.92360 0.99282 0.94313 0.93104 0.88088 0.94330 0.84955 0.84874 0.84150 0.82929 0.84484 0.84824 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -2.07 6.01 -26.73 -0.16 -2.24 16 3 C 0.05 0.93 4.81 -3.82 -0.02 0.91 16 4 N -0.53 -11.25 4.37 -237.51 -1.04 -12.28 16 5 C 0.19 4.91 4.59 -4.98 -0.02 4.89 16 6 C -0.50 -13.95 8.61 -34.44 -0.30 -14.25 16 7 H 0.07 1.87 7.66 -52.49 -0.40 1.47 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.11 2.08 5.11 -4.98 -0.03 2.06 16 15 C 0.16 2.73 5.70 -82.61 -0.47 2.26 16 16 C -0.16 -2.27 8.02 -39.36 -0.32 -2.59 16 17 C -0.08 -1.03 10.17 -39.31 -0.40 -1.43 16 18 C -0.14 -1.96 9.61 -39.11 -0.38 -2.34 16 19 C 0.16 2.56 6.73 -82.95 -0.56 2.01 16 20 C 0.17 2.58 6.73 -82.95 -0.56 2.02 16 21 C -0.13 -1.80 9.61 -39.11 -0.38 -2.18 16 22 C -0.08 -0.91 10.17 -39.31 -0.40 -1.31 16 23 C -0.17 -1.64 10.11 -39.37 -0.40 -2.04 16 24 C 0.09 1.00 11.18 -17.57 -0.20 0.80 16 25 N -0.48 -6.45 9.40 -9.78 -0.09 -6.54 16 26 N -0.45 -8.05 9.31 -6.04 -0.06 -8.11 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.38 6.52 -51.93 -0.34 1.04 16 32 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 33 H 0.06 0.96 5.55 -51.93 -0.29 0.67 16 34 H -0.01 -0.29 8.00 -51.93 -0.42 -0.70 16 35 H 0.04 1.06 6.24 -51.93 -0.32 0.73 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.10 2.15 7.32 -51.93 -0.38 1.77 16 38 H 0.04 0.68 8.02 -51.93 -0.42 0.27 16 39 H 0.13 1.58 8.00 -52.48 -0.42 1.16 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.14 1.72 7.53 -52.49 -0.40 1.32 16 42 H 0.15 2.39 7.53 -52.49 -0.40 1.99 16 43 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -31.60 373.25 -10.86 -42.46 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.71 Total: 1.65 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -4.30 Total: -13.65 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.45 Total: -52.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.60 -10.86 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237832027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.606 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds