Wall clock time and date at job start Tue Mar 31 2020 11:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46855 * 2 1 4 4 C 1.50692 * 109.46927 * 120.00174 * 2 1 3 5 5 H 1.08004 * 120.00113 * 120.00408 * 4 2 1 6 6 C 1.37882 * 120.00055 * 300.00047 * 4 2 1 7 7 N 1.31516 * 119.99978 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47391 * 59.99712 * 8 6 4 10 10 H 1.48504 * 109.46806 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.47050 * 299.99603 * 8 6 4 12 12 N 1.46500 * 109.46932 * 239.99961 * 2 1 3 13 13 C 1.46494 * 120.00339 * 304.61855 * 12 2 1 14 14 C 1.34782 * 119.99885 * 124.61399 * 12 2 1 15 15 O 1.21280 * 120.00265 * 184.52697 * 14 12 2 16 16 C 1.50702 * 119.99800 * 4.53456 * 14 12 2 17 17 C 1.53044 * 109.45898 * 189.15316 * 16 14 12 18 18 C 1.53191 * 109.30976 * 178.61207 * 17 16 14 19 19 N 1.46924 * 108.89192 * 54.56671 * 18 17 16 20 20 C 1.34779 * 120.63104 * 126.46124 * 19 18 17 21 21 O 1.21590 * 119.99878 * 19.16677 * 20 19 18 22 22 N 1.34775 * 120.00039 * 199.16335 * 20 19 18 23 23 C 1.46502 * 119.99880 * 199.26437 * 22 20 19 24 24 C 1.46499 * 119.99969 * 19.27241 * 22 20 19 25 25 C 1.46957 * 118.71758 * 306.63423 * 19 18 17 26 26 C 1.53038 * 109.46283 * 69.08419 * 16 14 12 27 27 H 1.09001 * 109.47689 * 299.99977 * 1 2 3 28 28 H 1.09005 * 109.47299 * 59.99673 * 1 2 3 29 29 H 1.09003 * 109.47434 * 179.97438 * 1 2 3 30 30 H 0.96994 * 120.00211 * 180.02562 * 7 6 4 31 31 H 1.09006 * 109.47223 * 264.86737 * 13 12 2 32 32 H 1.09004 * 109.46973 * 24.86375 * 13 12 2 33 33 H 1.09003 * 109.47572 * 144.86523 * 13 12 2 34 34 H 1.08998 * 109.46006 * 309.12319 * 16 14 12 35 35 H 1.09004 * 109.49287 * 58.66104 * 17 16 14 36 36 H 1.09000 * 109.49646 * 298.56230 * 17 16 14 37 37 H 1.09000 * 109.58278 * 174.42466 * 18 17 16 38 38 H 1.08997 * 109.59036 * 294.70171 * 18 17 16 39 39 H 1.09001 * 109.46352 * 90.00501 * 23 22 20 40 40 H 1.08996 * 109.46963 * 210.00094 * 23 22 20 41 41 H 1.08994 * 109.47115 * 330.00643 * 23 22 20 42 42 H 1.09006 * 109.47247 * 7.38151 * 24 22 20 43 43 H 1.08996 * 109.47600 * 127.38665 * 24 22 20 44 44 H 1.09010 * 109.46786 * 247.38924 * 24 22 20 45 45 H 1.09002 * 109.47047 * 293.58056 * 25 19 18 46 46 H 1.08997 * 109.71316 * 173.28885 * 25 19 18 47 47 H 1.09002 * 109.49827 * 301.33884 * 26 16 14 48 48 H 1.09005 * 109.49748 * 61.43058 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.8074 -1.1192 4.0077 10 1 1.8277 -0.4193 5.2204 11 1 1.8278 -2.5199 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 1.5829 -2.0602 -1.4803 14 6 2.8680 -0.0659 -2.0353 15 8 3.2079 -0.6055 -3.0670 16 6 3.3960 1.3032 -1.6917 17 6 4.1456 1.8776 -2.8959 18 6 4.6509 3.2830 -2.5548 19 7 5.4493 3.2156 -1.3233 20 6 6.7027 3.7099 -1.2896 21 8 7.0636 4.5097 -2.1313 22 7 7.5560 3.3178 -0.3228 23 6 8.7374 4.1279 -0.0158 24 6 7.3022 2.0814 0.4209 25 6 4.8562 2.5953 -0.1303 26 6 4.3486 1.1976 -0.4986 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.7094 1.1618 3.4843 31 1 2.3203 -2.7636 -1.0933 32 1 0.6208 -2.2423 -1.0015 33 1 1.4837 -2.1939 -2.5576 34 1 2.5642 1.9592 -1.4351 35 1 3.4727 1.9307 -3.7518 36 1 4.9924 1.2353 -3.1375 37 1 5.2689 3.6572 -3.3710 38 1 3.8021 3.9499 -2.4040 39 1 8.4873 4.8577 0.7543 40 1 9.5382 3.4812 0.3429 41 1 9.0656 4.6475 -0.9160 42 1 6.4620 1.5525 -0.0293 43 1 8.1893 1.4489 0.3880 44 1 7.0662 2.3228 1.4574 45 1 4.0240 3.2055 0.2208 46 1 5.6079 2.5159 0.6550 47 1 3.8202 0.7667 0.3519 48 1 5.1935 0.5616 -0.7628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442105.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:00 Heat of formation + Delta-G solvation = -22.128079 kcal Electronic energy + Delta-G solvation = -28282.665090 eV Core-core repulsion = 24567.537186 eV Total energy + Delta-G solvation = -3715.127904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76801 -39.38343 -36.95616 -35.76801 -35.60560 -32.75116 -32.63887 -31.14655 -29.22790 -27.97415 -27.56296 -26.08680 -25.40810 -23.97689 -22.99866 -21.58727 -20.88438 -19.31987 -18.12367 -17.33233 -16.60261 -16.52558 -16.33468 -15.84726 -15.19864 -14.74829 -14.72940 -14.51127 -14.11389 -14.03161 -13.59884 -13.36805 -13.07812 -12.86932 -12.79839 -12.60863 -12.31088 -12.13974 -11.87354 -11.78715 -11.62295 -11.43012 -11.19627 -11.15618 -10.97496 -10.85021 -10.77428 -10.45709 -10.34399 -10.25886 -10.14156 -9.88990 -9.43462 -9.00089 -8.76749 -8.63183 -8.28010 -7.68813 -6.27255 -4.36583 2.68590 3.11565 3.14733 3.21710 3.23220 3.34171 3.77830 3.92873 4.23227 4.85334 4.92550 5.02688 5.10971 5.16276 5.20769 5.25236 5.30352 5.47724 5.52944 5.54807 5.63489 5.72354 5.75448 5.84742 5.94860 5.97772 6.09088 6.13805 6.19564 6.26931 6.36851 6.39909 6.50319 6.55553 6.60094 6.67021 6.78755 6.88723 6.98940 7.12819 7.33806 7.57822 7.77876 7.91231 8.02723 8.38057 8.59525 8.67750 8.96723 9.32318 10.76369 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.005165 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.172437 B = 5419.492504 C = 6826.931562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.251 3.749 3 H 0.057 0.943 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.096 3.904 14 C 0.513 3.487 15 O -0.575 6.575 16 C -0.097 4.097 17 C -0.114 4.114 18 C 0.133 3.867 19 N -0.627 5.627 20 C 0.713 3.287 21 O -0.592 6.592 22 N -0.643 5.643 23 C 0.103 3.897 24 C 0.056 3.944 25 C 0.082 3.918 26 C -0.138 4.138 27 H 0.095 0.905 28 H 0.012 0.988 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.120 0.880 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 3.256 -1.720 8.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.151 3.849 3 H 0.075 0.925 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.322 5.322 13 C -0.048 4.048 14 C 0.301 3.699 15 O -0.457 6.457 16 C -0.119 4.119 17 C -0.153 4.153 18 C 0.010 3.990 19 N -0.365 5.365 20 C 0.417 3.583 21 O -0.470 6.470 22 N -0.381 5.381 23 C -0.041 4.041 24 C -0.086 4.086 25 C -0.040 4.040 26 C -0.176 4.176 27 H 0.114 0.886 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.122 0.878 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.127 0.873 47 H 0.138 0.862 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.572 3.541 -2.538 8.736 hybrid contribution 0.084 -0.685 1.244 1.423 sum 7.656 2.855 -1.293 8.273 Atomic orbital electron populations 1.22152 0.98135 0.99955 1.00935 1.19142 0.91454 0.93448 0.80891 0.92498 1.21295 1.32158 1.13321 0.89999 0.92088 1.24873 0.94711 0.94874 0.98899 1.69838 1.35819 1.22434 1.24183 0.86611 0.79289 0.79882 0.82012 1.20091 1.21188 1.20215 1.48245 1.44317 1.14505 1.25103 1.21361 0.99915 0.83474 1.00008 1.20469 0.78870 0.87516 0.83062 1.90589 1.60562 1.68403 1.26113 1.21158 0.99062 0.95071 0.96564 1.21779 1.00655 0.95540 0.97301 1.21492 0.94805 0.96693 0.86010 1.47359 1.12399 1.63325 1.13388 1.15874 0.80507 0.80700 0.81247 1.90856 1.77622 1.37976 1.40553 1.46829 1.25592 1.25737 1.39976 1.21480 0.86241 0.94875 1.01456 1.22513 1.03357 0.86214 0.96556 1.22565 0.99713 0.94000 0.87715 1.22173 0.99169 0.96455 0.99792 0.88638 0.96845 0.94715 0.92422 0.93784 0.91106 0.92626 0.88660 0.90409 0.91050 0.89374 0.91566 0.93383 0.91487 0.90474 0.87824 0.92221 0.91988 0.90914 0.87314 0.86176 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.87 37.16 0.33 -2.90 16 2 C 0.25 5.31 1.78 -69.09 -0.12 5.19 16 3 H 0.06 1.23 4.86 -51.93 -0.25 0.98 16 4 C -0.53 -12.15 7.21 -34.44 -0.25 -12.40 16 5 H 0.06 1.44 7.78 -52.48 -0.41 1.04 16 6 C 0.07 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -21.47 11.32 55.43 0.63 -20.85 16 8 Si 0.89 18.71 29.54 -169.99 -5.02 13.69 16 9 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 10 H -0.29 -6.05 7.11 56.52 0.40 -5.64 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 N -0.59 -11.81 2.75 -175.26 -0.48 -12.29 16 13 C 0.10 1.77 9.83 59.84 0.59 2.35 16 14 C 0.51 10.08 6.94 -10.98 -0.08 10.00 16 15 O -0.58 -12.58 15.64 5.56 0.09 -12.50 16 16 C -0.10 -1.61 1.63 -91.73 -0.15 -1.76 16 17 C -0.11 -1.72 4.68 -26.61 -0.12 -1.84 16 18 C 0.13 1.88 6.36 -3.71 -0.02 1.86 16 19 N -0.63 -9.24 2.86 -178.48 -0.51 -9.75 16 20 C 0.71 11.36 7.81 -86.92 -0.68 10.68 16 21 O -0.59 -11.18 15.59 5.29 0.08 -11.10 16 22 N -0.64 -8.34 3.22 -199.25 -0.64 -8.99 16 23 C 0.10 1.08 10.62 59.85 0.64 1.71 16 24 C 0.06 0.61 8.56 59.85 0.51 1.12 16 25 C 0.08 1.13 5.37 -3.69 -0.02 1.11 16 26 C -0.14 -2.15 4.55 -26.61 -0.12 -2.27 16 27 H 0.10 2.20 6.07 -51.93 -0.32 1.89 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.03 0.71 6.50 -51.93 -0.34 0.37 16 30 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.25 6.19 -51.93 -0.32 0.93 16 33 H 0.06 0.99 7.52 -51.93 -0.39 0.60 16 34 H 0.10 1.57 6.98 -51.93 -0.36 1.21 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 37 H 0.09 1.29 7.23 -51.93 -0.38 0.91 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.08 0.90 7.28 -51.93 -0.38 0.53 16 42 H 0.10 1.26 3.12 -51.93 -0.16 1.09 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.59 7.49 -51.92 -0.39 0.20 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.11 1.36 3.60 -56.71 -0.20 1.15 16 47 H 0.12 2.17 5.18 -51.93 -0.27 1.90 16 48 H 0.06 1.00 6.92 -51.93 -0.36 0.64 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -28.47 359.89 -7.48 -35.95 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.46 Total: 6.00 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 0.41 Total: 14.40 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -1.01 Total: -51.88 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.17 Total: -23.59 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.47 -7.48 -35.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442105.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.823 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds