Wall clock time and date at job start Tue Mar 31 2020 11:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46855 * 2 1 4 4 C 1.50692 * 109.46927 * 120.00174 * 2 1 3 5 5 H 1.08004 * 120.00113 * 120.00408 * 4 2 1 6 6 C 1.37882 * 120.00055 * 300.00047 * 4 2 1 7 7 N 1.31516 * 119.99978 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47391 * 59.99712 * 8 6 4 10 10 H 1.48504 * 109.46806 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.47050 * 299.99603 * 8 6 4 12 12 N 1.46500 * 109.46932 * 239.99961 * 2 1 3 13 13 C 1.46494 * 120.00339 * 304.61855 * 12 2 1 14 14 C 1.34782 * 119.99885 * 124.61399 * 12 2 1 15 15 O 1.21280 * 120.00265 * 184.52697 * 14 12 2 16 16 C 1.50702 * 119.99800 * 4.53456 * 14 12 2 17 17 C 1.53044 * 109.45898 * 189.15316 * 16 14 12 18 18 C 1.53191 * 109.30976 * 178.61207 * 17 16 14 19 19 N 1.46924 * 108.89192 * 54.56671 * 18 17 16 20 20 C 1.34779 * 120.63104 * 126.46124 * 19 18 17 21 21 O 1.21590 * 119.99878 * 19.16677 * 20 19 18 22 22 N 1.34775 * 120.00039 * 199.16335 * 20 19 18 23 23 C 1.46502 * 119.99880 * 199.26437 * 22 20 19 24 24 C 1.46499 * 119.99969 * 19.27241 * 22 20 19 25 25 C 1.46957 * 118.71758 * 306.63423 * 19 18 17 26 26 C 1.53038 * 109.46283 * 69.08419 * 16 14 12 27 27 H 1.09001 * 109.47689 * 299.99977 * 1 2 3 28 28 H 1.09005 * 109.47299 * 59.99673 * 1 2 3 29 29 H 1.09003 * 109.47434 * 179.97438 * 1 2 3 30 30 H 0.96994 * 120.00211 * 180.02562 * 7 6 4 31 31 H 1.09006 * 109.47223 * 264.86737 * 13 12 2 32 32 H 1.09004 * 109.46973 * 24.86375 * 13 12 2 33 33 H 1.09003 * 109.47572 * 144.86523 * 13 12 2 34 34 H 1.08998 * 109.46006 * 309.12319 * 16 14 12 35 35 H 1.09004 * 109.49287 * 58.66104 * 17 16 14 36 36 H 1.09000 * 109.49646 * 298.56230 * 17 16 14 37 37 H 1.09000 * 109.58278 * 174.42466 * 18 17 16 38 38 H 1.08997 * 109.59036 * 294.70171 * 18 17 16 39 39 H 1.09001 * 109.46352 * 90.00501 * 23 22 20 40 40 H 1.08996 * 109.46963 * 210.00094 * 23 22 20 41 41 H 1.08994 * 109.47115 * 330.00643 * 23 22 20 42 42 H 1.09006 * 109.47247 * 7.38151 * 24 22 20 43 43 H 1.08996 * 109.47600 * 127.38665 * 24 22 20 44 44 H 1.09010 * 109.46786 * 247.38924 * 24 22 20 45 45 H 1.09002 * 109.47047 * 293.58056 * 25 19 18 46 46 H 1.08997 * 109.71316 * 173.28885 * 25 19 18 47 47 H 1.09002 * 109.49827 * 301.33884 * 26 16 14 48 48 H 1.09005 * 109.49748 * 61.43058 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.8074 -1.1192 4.0077 10 1 1.8277 -0.4193 5.2204 11 1 1.8278 -2.5199 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 1.5829 -2.0602 -1.4803 14 6 2.8680 -0.0659 -2.0353 15 8 3.2079 -0.6055 -3.0670 16 6 3.3960 1.3032 -1.6917 17 6 4.1456 1.8776 -2.8959 18 6 4.6509 3.2830 -2.5548 19 7 5.4493 3.2156 -1.3233 20 6 6.7027 3.7099 -1.2896 21 8 7.0636 4.5097 -2.1313 22 7 7.5560 3.3178 -0.3228 23 6 8.7374 4.1279 -0.0158 24 6 7.3022 2.0814 0.4209 25 6 4.8562 2.5953 -0.1303 26 6 4.3486 1.1976 -0.4986 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.7094 1.1618 3.4843 31 1 2.3203 -2.7636 -1.0933 32 1 0.6208 -2.2423 -1.0015 33 1 1.4837 -2.1939 -2.5576 34 1 2.5642 1.9592 -1.4351 35 1 3.4727 1.9307 -3.7518 36 1 4.9924 1.2353 -3.1375 37 1 5.2689 3.6572 -3.3710 38 1 3.8021 3.9499 -2.4040 39 1 8.4873 4.8577 0.7543 40 1 9.5382 3.4812 0.3429 41 1 9.0656 4.6475 -0.9160 42 1 6.4620 1.5525 -0.0293 43 1 8.1893 1.4489 0.3880 44 1 7.0662 2.3228 1.4574 45 1 4.0240 3.2055 0.2208 46 1 5.6079 2.5159 0.6550 47 1 3.8202 0.7667 0.3519 48 1 5.1935 0.5616 -0.7628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442105.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:59 Heat of formation + Delta-G solvation = -37.950419 kcal Electronic energy + Delta-G solvation = -28283.351198 eV Core-core repulsion = 24567.537186 eV Total energy + Delta-G solvation = -3715.814012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.98476 -40.85600 -38.25244 -37.35019 -36.78982 -34.49122 -33.92784 -32.32694 -30.93362 -29.01799 -28.75781 -27.37439 -27.14955 -25.17847 -24.22041 -23.18054 -22.16759 -20.56292 -19.61930 -18.50830 -18.22596 -18.02439 -17.58724 -16.95054 -16.82235 -16.32519 -16.04952 -15.75184 -15.32124 -15.21427 -14.86910 -14.77596 -14.53907 -14.35135 -13.93422 -13.73911 -13.52711 -13.40777 -13.24412 -13.07565 -13.02657 -12.86703 -12.80365 -12.64113 -12.42476 -12.34815 -12.15536 -12.04061 -11.89576 -11.73155 -11.46459 -11.16909 -11.07722 -10.57448 -10.40952 -9.90032 -9.36840 -9.33253 -8.06508 -6.20014 1.48982 1.53452 1.57538 1.62020 1.76544 1.92972 2.36792 2.53614 2.73510 3.21886 3.61893 3.74475 3.76901 4.06612 4.12291 4.21595 4.33157 4.37737 4.44674 4.48568 4.54694 4.67251 4.67937 4.70563 4.77239 4.79265 4.81215 4.84675 4.89341 4.93987 4.97899 5.00210 5.06038 5.09728 5.22902 5.30540 5.42990 5.48012 5.63539 5.69380 5.81787 5.87840 6.02971 6.27237 6.71437 6.78478 6.91194 7.35536 7.41825 7.52793 8.95588 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.005165 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.172437 B = 5419.492504 C = 6826.931562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.054 0.946 4 C -0.531 4.531 5 H 0.051 0.949 6 C 0.038 3.962 7 N -0.904 5.904 8 Si 0.942 3.058 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.282 1.282 12 N -0.596 5.596 13 C 0.095 3.905 14 C 0.509 3.491 15 O -0.599 6.599 16 C -0.093 4.093 17 C -0.101 4.101 18 C 0.137 3.863 19 N -0.627 5.627 20 C 0.705 3.295 21 O -0.628 6.628 22 N -0.642 5.642 23 C 0.100 3.900 24 C 0.052 3.948 25 C 0.091 3.909 26 C -0.126 4.126 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.127 0.873 47 H 0.099 0.901 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 3.216 -0.751 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.071 0.929 4 C -0.569 4.569 5 H 0.070 0.930 6 C -0.164 4.164 7 N -0.542 5.542 8 Si 0.769 3.231 9 H -0.193 1.193 10 H -0.214 1.214 11 H -0.208 1.208 12 N -0.325 5.325 13 C -0.048 4.048 14 C 0.298 3.702 15 O -0.482 6.482 16 C -0.115 4.115 17 C -0.140 4.140 18 C 0.014 3.986 19 N -0.364 5.364 20 C 0.408 3.592 21 O -0.510 6.510 22 N -0.380 5.380 23 C -0.043 4.043 24 C -0.089 4.089 25 C -0.031 4.031 26 C -0.164 4.164 27 H 0.095 0.905 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.145 0.855 47 H 0.117 0.883 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.358 3.478 -1.542 9.183 hybrid contribution -0.154 -0.723 0.931 1.189 sum 8.203 2.754 -0.611 8.675 Atomic orbital electron populations 1.22032 0.98002 0.99889 1.00534 1.18981 0.91402 0.93178 0.80760 0.92852 1.21370 1.31832 1.12929 0.90790 0.93049 1.25351 0.94916 0.95350 1.00747 1.69922 1.36572 1.23286 1.24452 0.85856 0.79148 0.78549 0.79528 1.19338 1.21400 1.20764 1.48295 1.44395 1.15032 1.24805 1.21422 1.00217 0.82856 1.00346 1.20965 0.78339 0.88401 0.82514 1.90573 1.61306 1.69291 1.27049 1.21170 0.99418 0.93323 0.97544 1.21655 0.99895 0.95666 0.96788 1.21462 0.95082 0.96131 0.85944 1.47383 1.12325 1.63095 1.13622 1.16114 0.80955 0.80505 0.81592 1.90828 1.78257 1.39716 1.42152 1.46989 1.25498 1.26295 1.39222 1.21643 0.86146 0.95465 1.01040 1.22606 1.03848 0.85458 0.96982 1.22549 1.00112 0.92608 0.87815 1.22014 0.98580 0.97495 0.98330 0.90489 0.95694 0.94595 0.92563 0.93745 0.90460 0.92229 0.88412 0.90041 0.92503 0.89849 0.90225 0.92251 0.88618 0.92170 0.89252 0.90253 0.90076 0.91067 0.85528 0.88289 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.04 8.87 71.98 0.64 -5.40 16 2 C 0.26 10.73 1.78 44.24 0.08 10.81 16 3 H 0.05 2.28 4.86 -2.39 -0.01 2.27 16 4 C -0.53 -23.95 7.21 25.60 0.18 -23.77 16 5 H 0.05 2.39 7.78 -2.91 -0.02 2.37 16 6 C 0.04 1.73 5.30 84.66 0.45 2.18 16 7 N -0.90 -43.22 11.32 21.45 0.24 -42.98 16 8 Si 0.94 37.44 29.54 68.60 2.03 39.46 16 9 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 10 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 12 N -0.60 -23.38 2.75 -826.79 -2.28 -25.65 16 13 C 0.09 3.41 9.83 127.77 1.26 4.67 16 14 C 0.51 19.70 6.94 87.66 0.61 20.31 16 15 O -0.60 -25.96 15.64 -3.03 -0.05 -26.00 16 16 C -0.09 -3.02 1.63 -11.51 -0.02 -3.04 16 17 C -0.10 -2.99 4.68 30.67 0.14 -2.84 16 18 C 0.14 3.76 6.36 86.36 0.55 4.31 16 19 N -0.63 -17.79 2.86 -836.83 -2.39 -20.18 16 20 C 0.71 21.73 7.81 179.05 1.40 23.13 16 21 O -0.63 -23.57 15.59 -4.00 -0.06 -23.63 16 22 N -0.64 -15.42 3.22 -902.56 -2.91 -18.33 16 23 C 0.10 1.88 10.62 127.77 1.36 3.23 16 24 C 0.05 1.00 8.56 127.77 1.09 2.09 16 25 C 0.09 2.38 5.37 86.36 0.46 2.84 16 26 C -0.13 -3.81 4.55 30.67 0.14 -3.67 16 27 H 0.08 3.51 6.07 -2.39 -0.01 3.50 16 28 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.04 1.43 6.50 -2.39 -0.02 1.42 16 30 H 0.26 12.32 8.31 -92.71 -0.77 11.55 16 31 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.08 2.65 6.19 -2.38 -0.01 2.64 16 33 H 0.06 2.09 7.52 -2.39 -0.02 2.07 16 34 H 0.10 3.14 6.98 -2.39 -0.02 3.12 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 1.85 8.04 -2.39 -0.02 1.83 16 37 H 0.08 2.41 7.23 -2.39 -0.02 2.39 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.10 1.24 8.07 -2.39 -0.02 1.22 16 41 H 0.06 1.35 7.28 -2.39 -0.02 1.34 16 42 H 0.09 1.98 3.12 -2.38 -0.01 1.98 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.27 7.49 -2.38 -0.02 1.25 16 45 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.13 2.89 3.60 -6.88 -0.02 2.86 16 47 H 0.10 3.50 5.18 -2.39 -0.01 3.49 16 48 H 0.06 1.93 6.92 -2.38 -0.02 1.91 16 Total: -1.00 -59.32 359.89 3.87 -55.45 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.95 Total: 27.01 kcal Atomic # 6 Polarization: 26.51 SS G_CDS: 8.34 Total: 34.86 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -7.33 Total: -107.14 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -0.11 Total: -49.64 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.46 kcal Total: -59.32 3.87 -55.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442105.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.499 kcal (2) G-P(sol) polarization free energy of solvation -59.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds