Wall clock time and date at job start Tue Mar 31 2020 11:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47565 * 2 1 4 4 C 1.50705 * 109.47007 * 239.99113 * 2 1 3 5 5 H 1.08002 * 119.99880 * 240.00229 * 4 2 1 6 6 C 1.37874 * 119.99540 * 60.00543 * 4 2 1 7 7 N 1.31519 * 119.99486 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00414 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46849 * 270.00070 * 8 6 4 10 10 H 1.48501 * 109.46793 * 29.99566 * 8 6 4 11 11 H 1.48497 * 109.47294 * 149.99792 * 8 6 4 12 12 N 1.46505 * 109.46607 * 119.99560 * 2 1 3 13 13 C 1.46500 * 120.00083 * 54.81189 * 12 2 1 14 14 C 1.34768 * 120.00069 * 234.80674 * 12 2 1 15 15 O 1.21284 * 120.00589 * 185.64555 * 14 12 2 16 16 C 1.50706 * 120.00242 * 5.64701 * 14 12 2 17 17 C 1.53039 * 109.45817 * 285.26185 * 16 14 12 18 18 C 1.53200 * 109.31211 * 178.60860 * 17 16 14 19 19 N 1.46929 * 108.76788 * 54.63530 * 18 17 16 20 20 C 1.34776 * 120.62431 * 126.37611 * 19 18 17 21 21 O 1.21588 * 119.99753 * 196.36712 * 20 19 18 22 22 N 1.34774 * 120.00559 * 16.36232 * 20 19 18 23 23 C 1.46506 * 120.00167 * 197.04013 * 22 20 19 24 24 C 1.46501 * 120.00088 * 17.03477 * 22 20 19 25 25 C 1.46920 * 118.74119 * 306.38469 * 19 18 17 26 26 C 1.53039 * 109.46046 * 165.19195 * 16 14 12 27 27 H 1.08988 * 109.47908 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46982 * 300.00993 * 1 2 3 29 29 H 1.09004 * 109.46829 * 60.00007 * 1 2 3 30 30 H 0.97006 * 119.99464 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47546 * 95.12923 * 13 12 2 32 32 H 1.08999 * 109.47152 * 215.12882 * 13 12 2 33 33 H 1.09001 * 109.47108 * 335.13032 * 13 12 2 34 34 H 1.09003 * 109.45348 * 45.21698 * 16 14 12 35 35 H 1.08999 * 109.50205 * 298.56324 * 17 16 14 36 36 H 1.09001 * 109.50196 * 58.66120 * 17 16 14 37 37 H 1.08995 * 109.58295 * 294.84869 * 18 17 16 38 38 H 1.08996 * 109.70065 * 174.49172 * 18 17 16 39 39 H 1.09000 * 109.46997 * 89.99629 * 23 22 20 40 40 H 1.08995 * 109.46568 * 209.99959 * 23 22 20 41 41 H 1.09003 * 109.46386 * 329.99680 * 23 22 20 42 42 H 1.09007 * 109.46417 * 7.53984 * 24 22 20 43 43 H 1.09001 * 109.46963 * 127.53601 * 24 22 20 44 44 H 1.08998 * 109.47362 * 247.54330 * 24 22 20 45 45 H 1.08992 * 109.59091 * 293.82605 * 25 19 18 46 46 H 1.09001 * 109.70344 * 173.46766 * 25 19 18 47 47 H 1.08998 * 109.49407 * 301.33401 * 26 16 14 48 48 H 1.08991 * 109.49526 * 61.43789 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 2.1380 -0.8595 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8744 -2.6994 10 1 0.8494 2.1771 -1.4924 11 1 0.9774 1.9950 -3.9072 12 7 2.0182 -0.6906 1.1963 13 6 1.5730 -2.0556 1.4871 14 6 2.8770 -0.0701 2.0292 15 8 3.3607 -0.6751 2.9625 16 6 3.2363 1.3756 1.8011 17 6 4.1957 1.4812 0.6135 18 6 4.5313 2.9548 0.3628 19 7 5.0456 3.5410 1.6081 20 6 6.2316 4.1809 1.6272 21 8 6.7880 4.3985 2.6862 22 7 6.8011 4.5794 0.4725 23 6 8.2238 4.9277 0.4393 24 6 5.9975 4.6644 -0.7495 25 6 4.2425 3.4163 2.8320 26 6 3.9101 1.9375 3.0551 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.9040 -0.5279 -4.4375 31 1 2.3027 -2.7663 1.0990 32 1 1.4778 -2.1849 2.5652 33 1 0.6072 -2.2315 1.0134 34 1 2.3316 1.9454 1.5887 35 1 5.1109 0.9323 0.8351 36 1 3.7239 1.0596 -0.2740 37 1 3.6320 3.4867 0.0526 38 1 5.2887 3.0316 -0.4173 39 1 8.8103 4.0381 0.2095 40 1 8.3948 5.6837 -0.3269 41 1 8.5244 5.3202 1.4107 42 1 4.9478 4.4997 -0.5061 43 1 6.1166 5.6522 -1.1947 44 1 6.3300 3.9045 -1.4566 45 1 3.3196 3.9859 2.7232 46 1 4.8080 3.7959 3.6830 47 1 3.2349 1.8406 3.9052 48 1 4.8279 1.3843 3.2537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:03 Heat of formation + Delta-G solvation = -12.761861 kcal Electronic energy + Delta-G solvation = -28226.695865 eV Core-core repulsion = 24511.974111 eV Total energy + Delta-G solvation = -3714.721754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.81251 -39.52736 -37.03596 -35.90332 -35.74495 -32.81406 -32.65853 -31.13432 -30.17797 -28.14942 -27.66450 -26.25552 -25.32029 -24.08067 -23.16997 -21.75568 -20.76610 -19.67656 -18.23648 -17.25282 -16.97926 -16.46198 -16.39978 -16.11595 -15.37661 -15.05602 -14.59098 -14.44888 -14.18946 -13.98352 -13.80147 -13.44503 -13.31132 -12.97285 -12.93676 -12.83919 -12.54645 -12.41561 -12.22367 -12.05861 -11.94235 -11.57924 -11.48511 -11.41319 -11.07794 -11.05016 -10.70617 -10.50594 -10.35249 -10.23725 -9.98206 -9.85038 -9.50950 -9.12036 -8.86565 -8.79486 -8.37493 -7.79751 -6.31638 -4.34305 2.58565 3.05666 3.06654 3.12586 3.19585 3.23337 3.67341 3.80073 4.14026 4.70256 4.84433 4.96053 4.99568 5.05268 5.11190 5.17350 5.22796 5.37881 5.39223 5.48626 5.54550 5.58961 5.68583 5.72844 5.80571 5.84741 5.92871 5.98658 6.07011 6.10794 6.16369 6.18532 6.25720 6.32447 6.42395 6.46376 6.51162 6.59761 6.71636 6.81590 6.90078 7.22937 7.44797 7.82074 8.03107 8.39175 8.52701 8.72793 8.84917 9.27577 10.80804 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.005196 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.015462 B = 5387.403263 C = 6734.843327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.223 3.777 3 H 0.055 0.945 4 C -0.531 4.531 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.879 3.121 9 H -0.276 1.276 10 H -0.265 1.265 11 H -0.293 1.293 12 N -0.587 5.587 13 C 0.097 3.903 14 C 0.516 3.484 15 O -0.566 6.566 16 C -0.101 4.101 17 C -0.136 4.136 18 C 0.090 3.910 19 N -0.628 5.628 20 C 0.713 3.287 21 O -0.590 6.590 22 N -0.642 5.642 23 C 0.103 3.897 24 C 0.057 3.943 25 C 0.131 3.869 26 C -0.112 4.112 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.267 0.733 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 11.005 4.425 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.121 3.879 3 H 0.072 0.928 4 C -0.569 4.569 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.709 3.291 9 H -0.203 1.203 10 H -0.190 1.190 11 H -0.220 1.220 12 N -0.317 5.317 13 C -0.046 4.046 14 C 0.304 3.696 15 O -0.446 6.446 16 C -0.123 4.123 17 C -0.174 4.174 18 C -0.032 4.032 19 N -0.366 5.366 20 C 0.416 3.584 21 O -0.468 6.468 22 N -0.380 5.380 23 C -0.040 4.040 24 C -0.085 4.085 25 C 0.008 3.992 26 C -0.151 4.151 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.156 10.793 5.264 12.416 hybrid contribution -0.840 0.576 -0.704 1.238 sum 2.316 11.369 4.560 12.466 Atomic orbital electron populations 1.22523 0.99036 1.01663 0.99305 1.19512 0.90527 0.94097 0.83769 0.92776 1.21183 1.32924 1.14639 0.88176 0.90120 1.24899 0.95442 0.96576 0.95658 1.69878 1.44624 1.39874 0.98074 0.86997 0.81050 0.83669 0.77373 1.20316 1.18996 1.22008 1.47886 1.44423 1.15032 1.24357 1.21396 0.99962 0.83406 0.99830 1.20419 0.78649 0.88788 0.81759 1.90612 1.53648 1.67733 1.32651 1.21232 0.99898 0.94016 0.97140 1.22146 0.99876 0.96021 0.99355 1.22595 1.00039 0.93726 0.86816 1.47321 1.20659 1.57569 1.11027 1.15861 0.80524 0.78296 0.83706 1.90867 1.63539 1.62813 1.29585 1.46821 1.11004 1.71450 1.08769 1.21491 0.79305 0.99989 1.03237 1.22549 0.97715 1.01584 0.86686 1.21512 0.94363 0.96499 0.86807 1.21731 1.01869 0.94757 0.96713 0.92121 0.94627 0.93083 0.92261 0.93264 0.92559 0.91047 0.89142 0.91196 0.87006 0.91056 0.87546 0.93214 0.91445 0.90424 0.88374 0.92265 0.91836 0.91856 0.88918 0.90553 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 8.56 37.16 0.32 -2.83 16 2 C 0.22 4.53 1.41 -69.08 -0.10 4.43 16 3 H 0.05 1.06 3.59 -51.93 -0.19 0.87 16 4 C -0.53 -12.92 8.33 -34.44 -0.29 -13.21 16 5 H 0.08 2.24 8.04 -52.49 -0.42 1.82 16 6 C 0.08 1.96 5.45 -17.82 -0.10 1.86 16 7 N -0.89 -24.32 13.96 55.43 0.77 -23.55 16 8 Si 0.88 18.69 24.37 -169.99 -4.14 14.55 16 9 H -0.28 -5.87 6.87 56.52 0.39 -5.48 16 10 H -0.26 -5.11 6.53 56.52 0.37 -4.74 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.59 -11.53 2.75 -175.26 -0.48 -12.02 16 13 C 0.10 1.77 9.78 59.85 0.59 2.36 16 14 C 0.52 10.02 6.90 -10.99 -0.08 9.95 16 15 O -0.57 -12.39 15.75 5.55 0.09 -12.31 16 16 C -0.10 -1.62 1.62 -91.73 -0.15 -1.77 16 17 C -0.14 -2.14 4.97 -26.61 -0.13 -2.28 16 18 C 0.09 1.16 4.34 -3.70 -0.02 1.14 16 19 N -0.63 -8.72 2.90 -178.50 -0.52 -9.24 16 20 C 0.71 10.85 7.90 -86.92 -0.69 10.17 16 21 O -0.59 -10.87 15.46 5.29 0.08 -10.78 16 22 N -0.64 -7.83 3.22 -195.39 -0.63 -8.46 16 23 C 0.10 1.04 10.61 59.85 0.63 1.67 16 24 C 0.06 0.53 8.59 59.85 0.51 1.05 16 25 C 0.13 1.73 6.43 -3.71 -0.02 1.71 16 26 C -0.11 -1.65 4.74 -26.61 -0.13 -1.77 16 27 H 0.06 1.12 6.48 -51.94 -0.34 0.78 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.99 3.27 -51.93 -0.17 0.82 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 33 H 0.07 1.21 6.16 -51.93 -0.32 0.89 16 34 H 0.09 1.35 7.13 -51.93 -0.37 0.98 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.11 2.01 5.51 -51.93 -0.29 1.72 16 37 H 0.07 0.82 7.61 -51.93 -0.39 0.43 16 38 H 0.11 1.25 4.13 -52.01 -0.21 1.03 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 41 H 0.08 0.88 7.28 -51.93 -0.38 0.50 16 42 H 0.10 0.94 4.23 -51.93 -0.22 0.72 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.29 7.07 -51.93 -0.37 0.92 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -31.37 355.58 -6.54 -37.90 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.43 Total: 6.06 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 0.36 Total: 12.48 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.86 Total: -53.26 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.17 Total: -23.09 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.14 Total: 14.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.37 -6.54 -37.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.143 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds