Wall clock time and date at job start Tue Mar 31 2020 11:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47565 * 2 1 4 4 C 1.50705 * 109.47007 * 239.99113 * 2 1 3 5 5 H 1.08002 * 119.99880 * 240.00229 * 4 2 1 6 6 C 1.37874 * 119.99540 * 60.00543 * 4 2 1 7 7 N 1.31519 * 119.99486 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00414 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46849 * 270.00070 * 8 6 4 10 10 H 1.48501 * 109.46793 * 29.99566 * 8 6 4 11 11 H 1.48497 * 109.47294 * 149.99792 * 8 6 4 12 12 N 1.46505 * 109.46607 * 119.99560 * 2 1 3 13 13 C 1.46500 * 120.00083 * 54.81189 * 12 2 1 14 14 C 1.34768 * 120.00069 * 234.80674 * 12 2 1 15 15 O 1.21284 * 120.00589 * 185.64555 * 14 12 2 16 16 C 1.50706 * 120.00242 * 5.64701 * 14 12 2 17 17 C 1.53039 * 109.45817 * 285.26185 * 16 14 12 18 18 C 1.53200 * 109.31211 * 178.60860 * 17 16 14 19 19 N 1.46929 * 108.76788 * 54.63530 * 18 17 16 20 20 C 1.34776 * 120.62431 * 126.37611 * 19 18 17 21 21 O 1.21588 * 119.99753 * 196.36712 * 20 19 18 22 22 N 1.34774 * 120.00559 * 16.36232 * 20 19 18 23 23 C 1.46506 * 120.00167 * 197.04013 * 22 20 19 24 24 C 1.46501 * 120.00088 * 17.03477 * 22 20 19 25 25 C 1.46920 * 118.74119 * 306.38469 * 19 18 17 26 26 C 1.53039 * 109.46046 * 165.19195 * 16 14 12 27 27 H 1.08988 * 109.47908 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46982 * 300.00993 * 1 2 3 29 29 H 1.09004 * 109.46829 * 60.00007 * 1 2 3 30 30 H 0.97006 * 119.99464 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47546 * 95.12923 * 13 12 2 32 32 H 1.08999 * 109.47152 * 215.12882 * 13 12 2 33 33 H 1.09001 * 109.47108 * 335.13032 * 13 12 2 34 34 H 1.09003 * 109.45348 * 45.21698 * 16 14 12 35 35 H 1.08999 * 109.50205 * 298.56324 * 17 16 14 36 36 H 1.09001 * 109.50196 * 58.66120 * 17 16 14 37 37 H 1.08995 * 109.58295 * 294.84869 * 18 17 16 38 38 H 1.08996 * 109.70065 * 174.49172 * 18 17 16 39 39 H 1.09000 * 109.46997 * 89.99629 * 23 22 20 40 40 H 1.08995 * 109.46568 * 209.99959 * 23 22 20 41 41 H 1.09003 * 109.46386 * 329.99680 * 23 22 20 42 42 H 1.09007 * 109.46417 * 7.53984 * 24 22 20 43 43 H 1.09001 * 109.46963 * 127.53601 * 24 22 20 44 44 H 1.08998 * 109.47362 * 247.54330 * 24 22 20 45 45 H 1.08992 * 109.59091 * 293.82605 * 25 19 18 46 46 H 1.09001 * 109.70344 * 173.46766 * 25 19 18 47 47 H 1.08998 * 109.49407 * 301.33401 * 26 16 14 48 48 H 1.08991 * 109.49526 * 61.43789 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 2.1380 -0.8595 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8744 -2.6994 10 1 0.8494 2.1771 -1.4924 11 1 0.9774 1.9950 -3.9072 12 7 2.0182 -0.6906 1.1963 13 6 1.5730 -2.0556 1.4871 14 6 2.8770 -0.0701 2.0292 15 8 3.3607 -0.6751 2.9625 16 6 3.2363 1.3756 1.8011 17 6 4.1957 1.4812 0.6135 18 6 4.5313 2.9548 0.3628 19 7 5.0456 3.5410 1.6081 20 6 6.2316 4.1809 1.6272 21 8 6.7880 4.3985 2.6862 22 7 6.8011 4.5794 0.4725 23 6 8.2238 4.9277 0.4393 24 6 5.9975 4.6644 -0.7495 25 6 4.2425 3.4163 2.8320 26 6 3.9101 1.9375 3.0551 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.9040 -0.5279 -4.4375 31 1 2.3027 -2.7663 1.0990 32 1 1.4778 -2.1849 2.5652 33 1 0.6072 -2.2315 1.0134 34 1 2.3316 1.9454 1.5887 35 1 5.1109 0.9323 0.8351 36 1 3.7239 1.0596 -0.2740 37 1 3.6320 3.4867 0.0526 38 1 5.2887 3.0316 -0.4173 39 1 8.8103 4.0381 0.2095 40 1 8.3948 5.6837 -0.3269 41 1 8.5244 5.3202 1.4107 42 1 4.9478 4.4997 -0.5061 43 1 6.1166 5.6522 -1.1947 44 1 6.3300 3.9045 -1.4566 45 1 3.3196 3.9859 2.7232 46 1 4.8080 3.7959 3.6830 47 1 3.2349 1.8406 3.9052 48 1 4.8279 1.3843 3.2537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:02 Heat of formation + Delta-G solvation = -33.831700 kcal Electronic energy + Delta-G solvation = -28227.609522 eV Core-core repulsion = 24511.974111 eV Total energy + Delta-G solvation = -3715.635411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.96130 -40.95579 -38.26346 -37.51155 -36.80571 -34.51971 -34.01233 -32.24956 -31.84116 -29.02174 -28.90819 -27.46931 -27.06238 -25.24186 -24.30782 -23.32960 -21.99087 -20.78250 -19.72153 -18.85595 -18.20689 -17.99511 -17.53665 -17.13772 -16.94128 -16.56311 -15.91639 -15.61652 -15.41722 -15.13811 -15.00569 -14.81230 -14.64354 -14.47834 -14.07281 -13.95442 -13.89924 -13.63157 -13.49428 -13.31858 -13.07325 -13.02242 -12.94056 -12.80628 -12.36635 -12.24566 -12.14562 -11.92470 -11.74216 -11.54279 -11.42830 -11.29740 -11.12217 -10.75773 -10.55204 -9.93113 -9.43879 -9.34418 -8.24189 -6.32411 1.42528 1.44003 1.56783 1.59586 1.69020 1.95770 2.28577 2.37265 2.75005 3.09933 3.52687 3.69987 3.75818 3.99153 4.11533 4.20615 4.27559 4.34739 4.41685 4.45807 4.49782 4.52458 4.55659 4.64390 4.67008 4.69167 4.74730 4.78199 4.82255 4.85495 4.90384 4.91538 4.93143 4.95705 5.00631 5.19629 5.28340 5.33967 5.42930 5.52907 5.65416 5.79197 5.87747 6.19815 6.70278 6.74368 6.78736 7.24361 7.37729 7.42959 8.92206 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.005196 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.015462 B = 5387.403263 C = 6734.843327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.228 3.772 3 H 0.073 0.927 4 C -0.527 4.527 5 H 0.027 0.973 6 C 0.025 3.975 7 N -0.943 5.943 8 Si 0.938 3.062 9 H -0.272 1.272 10 H -0.221 1.221 11 H -0.298 1.298 12 N -0.593 5.593 13 C 0.096 3.904 14 C 0.509 3.491 15 O -0.597 6.597 16 C -0.097 4.097 17 C -0.130 4.130 18 C 0.095 3.905 19 N -0.628 5.628 20 C 0.703 3.297 21 O -0.631 6.631 22 N -0.642 5.642 23 C 0.100 3.900 24 C 0.051 3.949 25 C 0.135 3.865 26 C -0.102 4.102 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.267 0.733 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 14.170 4.281 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.125 3.875 3 H 0.091 0.909 4 C -0.565 4.565 5 H 0.046 0.954 6 C -0.174 4.174 7 N -0.582 5.582 8 Si 0.764 3.236 9 H -0.199 1.199 10 H -0.144 1.144 11 H -0.225 1.225 12 N -0.322 5.322 13 C -0.047 4.047 14 C 0.298 3.702 15 O -0.479 6.479 16 C -0.118 4.118 17 C -0.169 4.169 18 C -0.026 4.026 19 N -0.365 5.365 20 C 0.407 3.593 21 O -0.513 6.513 22 N -0.380 5.380 23 C -0.043 4.043 24 C -0.090 4.090 25 C 0.012 3.988 26 C -0.141 4.141 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.345 13.960 5.113 14.928 hybrid contribution -0.175 -0.571 -0.664 0.893 sum 1.169 13.389 4.450 14.157 Atomic orbital electron populations 1.22463 0.97041 1.02144 1.00776 1.19439 0.91894 0.94212 0.81908 0.90910 1.21262 1.31813 1.13070 0.90360 0.95444 1.25734 0.96801 0.99986 0.94876 1.70052 1.46971 1.42381 0.98811 0.86028 0.78829 0.80119 0.78646 1.19862 1.14410 1.22548 1.48002 1.44537 1.15420 1.24239 1.21436 0.99975 0.82782 1.00528 1.21102 0.77771 0.90211 0.81089 1.90595 1.54458 1.68845 1.34003 1.21293 1.01000 0.91795 0.97690 1.22040 0.98489 0.98099 0.98222 1.22729 1.01716 0.91473 0.86665 1.47352 1.20425 1.57245 1.11512 1.16139 0.80648 0.78509 0.84051 1.90836 1.64617 1.64472 1.31355 1.46994 1.11852 1.70392 1.08767 1.21619 0.78369 1.00942 1.03358 1.22723 0.97361 1.03372 0.85557 1.21538 0.95411 0.95325 0.86505 1.21633 1.00455 0.95508 0.96513 0.92436 0.91355 0.93174 0.92371 0.95239 0.91500 0.89714 0.86467 0.93751 0.89028 0.88084 0.86320 0.93038 0.88246 0.92185 0.88190 0.89868 0.90938 0.88576 0.89921 0.89587 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.63 8.56 71.98 0.62 -5.02 16 2 C 0.23 8.76 1.41 44.25 0.06 8.82 16 3 H 0.07 2.56 3.59 -2.39 -0.01 2.55 16 4 C -0.53 -25.84 8.33 25.60 0.21 -25.63 16 5 H 0.03 1.60 8.04 -2.91 -0.02 1.58 16 6 C 0.02 1.24 5.45 84.65 0.46 1.70 16 7 N -0.94 -52.90 13.96 21.45 0.30 -52.60 16 8 Si 0.94 36.23 24.37 68.60 1.67 37.91 16 9 H -0.27 -10.35 6.87 99.48 0.68 -9.67 16 10 H -0.22 -6.97 6.53 99.48 0.65 -6.32 16 11 H -0.30 -11.74 7.11 99.48 0.71 -11.03 16 12 N -0.59 -22.79 2.75 -826.79 -2.28 -25.06 16 13 C 0.10 3.50 9.78 127.77 1.25 4.75 16 14 C 0.51 19.40 6.90 87.66 0.60 20.00 16 15 O -0.60 -26.32 15.75 -3.04 -0.05 -26.36 16 16 C -0.10 -2.89 1.62 -11.51 -0.02 -2.91 16 17 C -0.13 -3.94 4.97 30.67 0.15 -3.78 16 18 C 0.10 2.16 4.34 86.36 0.38 2.54 16 19 N -0.63 -16.06 2.90 -836.93 -2.43 -18.49 16 20 C 0.70 20.49 7.90 179.06 1.41 21.90 16 21 O -0.63 -23.21 15.46 -3.99 -0.06 -23.27 16 22 N -0.64 -14.30 3.22 -890.36 -2.87 -17.16 16 23 C 0.10 1.85 10.61 127.77 1.36 3.21 16 24 C 0.05 0.77 8.59 127.77 1.10 1.87 16 25 C 0.13 3.25 6.43 86.37 0.56 3.80 16 26 C -0.10 -2.87 4.74 30.67 0.15 -2.72 16 27 H 0.06 1.97 6.48 -2.39 -0.02 1.95 16 28 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.05 1.72 3.27 -2.38 -0.01 1.71 16 30 H 0.27 14.07 8.31 -92.70 -0.77 13.30 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 2.28 7.67 -2.39 -0.02 2.26 16 33 H 0.08 2.82 6.16 -2.39 -0.01 2.81 16 34 H 0.12 2.93 7.13 -2.39 -0.02 2.91 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 3.19 5.51 -2.39 -0.01 3.18 16 37 H 0.10 1.78 7.61 -2.39 -0.02 1.76 16 38 H 0.12 2.43 4.13 -2.46 -0.01 2.42 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 1.18 8.07 -2.39 -0.02 1.16 16 41 H 0.06 1.33 7.28 -2.39 -0.02 1.32 16 42 H 0.10 1.48 4.23 -2.39 -0.01 1.47 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 1.00 7.51 -2.39 -0.02 0.98 16 45 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 2.20 7.07 -2.39 -0.02 2.19 16 47 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.04 1.55 7.99 -2.39 -0.02 1.53 16 Total: -1.00 -71.64 355.58 3.46 -68.18 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.89 Total: 28.34 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: 8.28 Total: 28.53 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -7.27 Total: -113.31 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.11 Total: -49.63 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 1.67 Total: 37.91 kcal Total: -71.64 3.46 -68.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.344 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds