Wall clock time and date at job start Tue Mar 31 2020 11:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47664 * 120.00252 * 2 1 3 5 5 O 1.42895 * 109.47409 * 174.99890 * 4 2 1 6 6 C 1.42898 * 113.99869 * 179.97438 * 5 4 2 7 7 H 1.09008 * 109.47115 * 30.01138 * 6 5 4 8 8 C 1.52991 * 109.47721 * 270.00441 * 6 5 4 9 9 C 1.50706 * 109.47003 * 150.00078 * 6 5 4 10 10 N 1.29944 * 126.28499 * 45.03136 * 9 6 5 11 11 O 1.21295 * 110.25258 * 180.02562 * 10 9 6 12 12 C 1.33643 * 109.81151 * 0.02562 * 11 10 9 13 13 C 1.50701 * 126.55202 * 179.97438 * 12 11 10 14 14 N 1.46906 * 109.46965 * 270.02073 * 13 12 11 15 15 C 1.46902 * 110.99573 * 293.95399 * 14 13 12 16 16 C 1.46898 * 110.99888 * 170.00033 * 14 13 12 17 17 C 1.53006 * 109.46682 * 189.99906 * 16 14 13 18 18 C 1.50699 * 109.46643 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99736 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00089 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00006 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47188 * 120.00042 * 22 20 18 25 25 H 1.48494 * 109.47338 * 240.00437 * 22 20 18 26 26 N 1.31124 * 106.89509 * 0.22468 * 12 11 10 27 27 H 1.08995 * 109.46985 * 299.99572 * 1 2 3 28 28 H 1.09001 * 109.47279 * 60.00070 * 1 2 3 29 29 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46920 * 240.00777 * 2 1 3 31 31 H 1.09007 * 109.47028 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47589 * 300.00208 * 3 2 1 33 33 H 1.08995 * 109.46998 * 60.00436 * 3 2 1 34 34 H 1.08996 * 109.46728 * 54.99630 * 4 2 1 35 35 H 1.08998 * 109.46897 * 295.00344 * 4 2 1 36 36 H 1.08997 * 109.47004 * 299.99963 * 8 6 5 37 37 H 1.09003 * 109.47085 * 60.00183 * 8 6 5 38 38 H 1.09002 * 109.47647 * 180.02562 * 8 6 5 39 39 H 1.08993 * 109.47133 * 150.02111 * 13 12 11 40 40 H 1.08996 * 109.47320 * 30.01851 * 13 12 11 41 41 H 1.09004 * 109.47457 * 60.00221 * 15 14 13 42 42 H 1.09001 * 109.46615 * 179.97438 * 15 14 13 43 43 H 1.08990 * 109.47358 * 299.99539 * 15 14 13 44 44 H 1.08999 * 109.46988 * 309.99510 * 16 14 13 45 45 H 1.08996 * 109.46945 * 69.99996 * 16 14 13 46 46 H 1.08999 * 109.47085 * 299.99544 * 17 16 14 47 47 H 1.08996 * 109.47357 * 60.00343 * 17 16 14 48 48 H 0.97001 * 120.00402 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4642 -0.8238 1.1918 6 6 4.0451 -1.4846 2.3178 7 1 3.3408 -2.2170 2.7125 8 6 4.3709 -0.4549 3.4015 9 6 5.3106 -2.1836 1.8922 10 7 6.2469 -1.6882 1.1395 11 8 7.1327 -2.5016 0.9812 12 6 6.8364 -3.6275 1.6373 13 6 7.6735 -4.8792 1.6954 14 7 7.2987 -5.7707 0.5896 15 6 5.9238 -6.2618 0.7522 16 6 8.2458 -6.8871 0.4693 17 6 7.9749 -7.6479 -0.8303 18 6 8.9461 -8.7936 -0.9534 19 1 9.6826 -8.9625 -0.1818 20 6 8.8938 -9.6268 -2.0508 21 7 7.9967 -9.4214 -2.9902 22 14 10.0981 -11.0465 -2.2038 23 1 10.9994 -11.0606 -1.0236 24 1 9.3484 -12.3268 -2.2687 25 1 10.9036 -10.8813 -3.4403 26 7 5.6755 -3.4368 2.2164 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -1.7198 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 5.0752 0.2773 3.0068 37 1 3.4556 0.0505 3.7093 38 1 4.8144 -0.9590 4.2602 39 1 7.5030 -5.3866 2.6449 40 1 8.7276 -4.6158 1.6084 41 1 5.2356 -5.4167 0.7685 42 1 5.6720 -6.9191 -0.0801 43 1 5.8436 -6.8138 1.6886 44 1 9.2646 -6.4997 0.4579 45 1 8.1227 -7.5609 1.3171 46 1 6.9562 -8.0353 -0.8190 47 1 8.0980 -6.9741 -1.6782 48 1 7.9601 -10.0073 -3.7624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173925097.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:35 Heat of formation + Delta-G solvation = 11.025404 kcal Electronic energy + Delta-G solvation = -25661.716517 eV Core-core repulsion = 21948.026256 eV Total energy + Delta-G solvation = -3713.690261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.54409 -39.04067 -37.56860 -36.22905 -35.18700 -33.43885 -32.58718 -31.03605 -29.76762 -27.73330 -27.46939 -26.60537 -25.70103 -24.88481 -23.63735 -22.60977 -20.84288 -20.55658 -20.04350 -18.06161 -17.52773 -17.11684 -16.49759 -16.02137 -15.78761 -15.23430 -14.98793 -14.70018 -14.61507 -14.35840 -14.16573 -13.48280 -13.19790 -13.10422 -12.78393 -12.64087 -12.54518 -12.46896 -12.39566 -12.20263 -11.74487 -11.63700 -11.55170 -11.36981 -11.24799 -11.18659 -11.14321 -11.03381 -10.93027 -10.87835 -10.58340 -10.12766 -9.95986 -9.88849 -9.48221 -9.14885 -8.36292 -8.00412 -6.02013 -4.04921 1.18418 2.09768 2.86079 2.98806 3.30286 3.37950 3.41223 3.73494 4.04842 4.34305 4.45747 4.50786 4.53694 4.62466 4.71255 4.82209 5.01781 5.03004 5.13540 5.19531 5.25501 5.29769 5.34162 5.36363 5.37561 5.45734 5.53210 5.61765 5.68426 5.70808 5.74796 5.77496 5.86553 5.95557 5.97393 6.04074 6.17565 6.31763 6.44207 6.80437 6.84184 7.26730 7.30288 7.71045 7.82953 8.02809 8.20843 8.38063 9.02373 9.59040 11.09333 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002276 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.345389 B =12299.883543 C =13182.153523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.065 3.935 5 O -0.369 6.369 6 C 0.185 3.815 7 H 0.091 0.909 8 C -0.167 4.167 9 C 0.161 3.839 10 N -0.361 5.361 11 O 0.089 5.911 12 C 0.207 3.793 13 C 0.139 3.861 14 N -0.538 5.538 15 C 0.023 3.977 16 C 0.065 3.935 17 C 0.027 3.973 18 C -0.522 4.522 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 N -0.480 5.480 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.068 0.932 45 H 0.028 0.972 46 H 0.019 0.981 47 H 0.027 0.973 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.874 19.227 12.752 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.011 4.011 5 O -0.287 6.287 6 C 0.125 3.875 7 H 0.109 0.891 8 C -0.225 4.225 9 C -0.113 4.113 10 N -0.066 5.066 11 O 0.028 5.972 12 C -0.013 4.013 13 C 0.009 3.991 14 N -0.264 5.264 15 C -0.125 4.125 16 C -0.061 4.061 17 C -0.011 4.011 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.531 5.531 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 N -0.215 5.215 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.046 0.954 46 H 0.037 0.963 47 H 0.045 0.955 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.217 20.227 11.910 26.462 hybrid contribution 0.482 -1.529 0.675 1.740 sum -11.735 18.698 12.586 25.411 Atomic orbital electron populations 1.21786 0.94142 1.02125 1.02252 1.21103 0.95508 0.97009 0.97837 1.21787 1.02091 0.94931 1.01343 1.22714 0.80351 0.99587 0.98470 1.87995 1.20441 1.78039 1.42274 1.19886 0.87915 0.93153 0.86556 0.89130 1.22240 1.03103 0.99329 0.97858 1.25391 0.98778 0.89393 0.97689 1.74641 0.99546 1.14635 1.17817 1.85345 1.37731 1.19714 1.54366 1.28808 0.92031 0.91724 0.88779 1.20618 0.97107 0.85173 0.96191 1.62119 1.04232 1.20559 1.39497 1.22471 0.89018 0.99876 1.01154 1.22435 0.93782 0.89055 1.00853 1.19127 0.97129 0.94011 0.90793 1.21192 1.16798 1.12223 1.05915 0.92590 1.25002 0.95724 0.97836 0.95795 1.69979 1.34584 1.38499 1.10034 0.86528 0.81118 0.82248 0.78029 1.19739 1.21068 1.20979 1.71847 1.10634 1.13876 1.25140 0.92515 0.91887 0.92395 0.90169 0.91736 0.92734 0.92970 0.92955 0.92963 0.91115 0.91027 0.91005 0.90278 0.87065 0.92443 0.89773 0.95496 0.91390 0.95369 0.96285 0.95510 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.10 -0.79 3.16 -90.62 -0.29 -1.08 16 3 C -0.14 -1.15 9.09 37.16 0.34 -0.81 16 4 C 0.07 0.57 5.13 37.16 0.19 0.76 16 5 O -0.37 -4.42 9.51 -35.23 -0.33 -4.76 16 6 C 0.18 2.08 3.27 -27.88 -0.09 1.99 16 7 H 0.09 0.89 7.79 -51.92 -0.40 0.49 16 8 C -0.17 -1.47 9.51 37.15 0.35 -1.12 16 9 C 0.16 2.33 7.10 -156.37 -1.11 1.22 16 10 N -0.36 -5.74 12.16 30.90 0.38 -5.37 16 11 O 0.09 1.40 11.31 18.10 0.20 1.60 16 12 C 0.21 3.04 7.13 -13.06 -0.09 2.94 16 13 C 0.14 1.88 5.59 -4.97 -0.03 1.85 16 14 N -0.54 -9.33 4.75 -244.37 -1.16 -10.49 16 15 C 0.02 0.39 9.17 60.07 0.55 0.94 16 16 C 0.06 1.26 4.90 -3.82 -0.02 1.24 16 17 C 0.03 0.67 4.90 -27.88 -0.14 0.54 16 18 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 22 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 N -0.48 -7.12 10.84 -9.87 -0.11 -7.23 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.11 1.26 7.93 -51.93 -0.41 0.85 16 41 H 0.06 0.95 6.74 -51.93 -0.35 0.60 16 42 H 0.08 1.58 6.30 -51.93 -0.33 1.26 16 43 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 45 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 46 H 0.02 0.50 6.47 -51.93 -0.34 0.17 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 393.93 15.07 5.94 5.94 Total: -1.00 -31.47 393.93 -8.27 -39.74 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -8.50 Total: -4.67 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.40 Total: -5.23 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.16 Total: -48.90 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -0.13 Total: -3.16 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.47 -8.27 -39.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173925097.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.769 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds