Wall clock time and date at job start Tue Mar 31 2020 11:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47664 * 120.00252 * 2 1 3 5 5 O 1.42895 * 109.47409 * 174.99890 * 4 2 1 6 6 C 1.42898 * 113.99869 * 179.97438 * 5 4 2 7 7 H 1.09008 * 109.47115 * 30.01138 * 6 5 4 8 8 C 1.52991 * 109.47721 * 270.00441 * 6 5 4 9 9 C 1.50706 * 109.47003 * 150.00078 * 6 5 4 10 10 N 1.29944 * 126.28499 * 45.03136 * 9 6 5 11 11 O 1.21295 * 110.25258 * 180.02562 * 10 9 6 12 12 C 1.33643 * 109.81151 * 0.02562 * 11 10 9 13 13 C 1.50701 * 126.55202 * 179.97438 * 12 11 10 14 14 N 1.46906 * 109.46965 * 270.02073 * 13 12 11 15 15 C 1.46902 * 110.99573 * 293.95399 * 14 13 12 16 16 C 1.46898 * 110.99888 * 170.00033 * 14 13 12 17 17 C 1.53006 * 109.46682 * 189.99906 * 16 14 13 18 18 C 1.50699 * 109.46643 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99736 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00089 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00006 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47188 * 120.00042 * 22 20 18 25 25 H 1.48494 * 109.47338 * 240.00437 * 22 20 18 26 26 N 1.31124 * 106.89509 * 0.22468 * 12 11 10 27 27 H 1.08995 * 109.46985 * 299.99572 * 1 2 3 28 28 H 1.09001 * 109.47279 * 60.00070 * 1 2 3 29 29 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46920 * 240.00777 * 2 1 3 31 31 H 1.09007 * 109.47028 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47589 * 300.00208 * 3 2 1 33 33 H 1.08995 * 109.46998 * 60.00436 * 3 2 1 34 34 H 1.08996 * 109.46728 * 54.99630 * 4 2 1 35 35 H 1.08998 * 109.46897 * 295.00344 * 4 2 1 36 36 H 1.08997 * 109.47004 * 299.99963 * 8 6 5 37 37 H 1.09003 * 109.47085 * 60.00183 * 8 6 5 38 38 H 1.09002 * 109.47647 * 180.02562 * 8 6 5 39 39 H 1.08993 * 109.47133 * 150.02111 * 13 12 11 40 40 H 1.08996 * 109.47320 * 30.01851 * 13 12 11 41 41 H 1.09004 * 109.47457 * 60.00221 * 15 14 13 42 42 H 1.09001 * 109.46615 * 179.97438 * 15 14 13 43 43 H 1.08990 * 109.47358 * 299.99539 * 15 14 13 44 44 H 1.08999 * 109.46988 * 309.99510 * 16 14 13 45 45 H 1.08996 * 109.46945 * 69.99996 * 16 14 13 46 46 H 1.08999 * 109.47085 * 299.99544 * 17 16 14 47 47 H 1.08996 * 109.47357 * 60.00343 * 17 16 14 48 48 H 0.97001 * 120.00402 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4642 -0.8238 1.1918 6 6 4.0451 -1.4846 2.3178 7 1 3.3408 -2.2170 2.7125 8 6 4.3709 -0.4549 3.4015 9 6 5.3106 -2.1836 1.8922 10 7 6.2469 -1.6882 1.1395 11 8 7.1327 -2.5016 0.9812 12 6 6.8364 -3.6275 1.6373 13 6 7.6735 -4.8792 1.6954 14 7 7.2987 -5.7707 0.5896 15 6 5.9238 -6.2618 0.7522 16 6 8.2458 -6.8871 0.4693 17 6 7.9749 -7.6479 -0.8303 18 6 8.9461 -8.7936 -0.9534 19 1 9.6826 -8.9625 -0.1818 20 6 8.8938 -9.6268 -2.0508 21 7 7.9967 -9.4214 -2.9902 22 14 10.0981 -11.0465 -2.2038 23 1 10.9994 -11.0606 -1.0236 24 1 9.3484 -12.3268 -2.2687 25 1 10.9036 -10.8813 -3.4403 26 7 5.6755 -3.4368 2.2164 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -1.7198 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 5.0752 0.2773 3.0068 37 1 3.4556 0.0505 3.7093 38 1 4.8144 -0.9590 4.2602 39 1 7.5030 -5.3866 2.6449 40 1 8.7276 -4.6158 1.6084 41 1 5.2356 -5.4167 0.7685 42 1 5.6720 -6.9191 -0.0801 43 1 5.8436 -6.8138 1.6886 44 1 9.2646 -6.4997 0.4579 45 1 8.1227 -7.5609 1.3171 46 1 6.9562 -8.0353 -0.8190 47 1 8.0980 -6.9741 -1.6782 48 1 7.9601 -10.0073 -3.7624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173925097.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:34 Heat of formation + Delta-G solvation = -10.294264 kcal Electronic energy + Delta-G solvation = -25662.641008 eV Core-core repulsion = 21948.026256 eV Total energy + Delta-G solvation = -3714.614751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.69581 -39.84081 -38.95831 -37.17046 -36.07966 -35.24978 -33.94756 -32.01709 -31.45482 -29.00502 -28.04526 -27.42056 -27.29142 -25.83466 -25.16116 -23.92206 -21.96124 -21.60315 -21.24365 -19.25580 -18.62941 -18.52460 -17.93646 -16.83606 -16.63691 -16.62421 -16.47110 -16.17592 -16.03314 -15.31322 -14.87952 -14.66498 -14.22994 -14.19268 -14.12333 -13.76771 -13.67031 -13.35477 -13.26079 -13.19866 -12.97654 -12.89059 -12.76609 -12.72407 -12.57873 -12.38851 -12.36671 -12.13082 -12.00272 -11.86951 -11.78854 -11.56942 -11.45396 -11.23560 -11.07869 -10.75267 -10.51564 -9.37120 -8.16851 -6.27493 0.03069 0.99404 1.43620 1.44226 1.57043 1.74990 2.08615 2.43321 2.82436 2.95237 3.17374 3.18013 3.65692 3.85929 3.91860 3.96124 4.03608 4.17383 4.18539 4.27062 4.36749 4.39780 4.45949 4.55676 4.58667 4.63465 4.66805 4.67249 4.74315 4.75461 4.79269 4.87701 4.97385 4.98321 5.01063 5.08991 5.12471 5.20571 5.35080 5.40133 5.49469 5.64303 5.78293 6.00477 6.05825 6.08335 6.30383 6.91207 7.07106 7.41819 8.95611 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002276 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.345389 B =12299.883543 C =13182.153523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.141 4.141 4 C 0.061 3.939 5 O -0.394 6.394 6 C 0.180 3.820 7 H 0.105 0.895 8 C -0.159 4.159 9 C 0.160 3.840 10 N -0.384 5.384 11 O 0.076 5.924 12 C 0.207 3.793 13 C 0.143 3.857 14 N -0.556 5.556 15 C 0.032 3.968 16 C 0.082 3.918 17 C 0.031 3.969 18 C -0.537 4.537 19 H 0.068 0.932 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.281 1.281 25 H -0.282 1.282 26 N -0.486 5.486 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.042 0.958 44 H 0.083 0.917 45 H 0.040 0.960 46 H -0.006 1.006 47 H -0.010 1.010 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 19.387 14.906 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.198 4.198 4 C -0.015 4.015 5 O -0.313 6.313 6 C 0.120 3.880 7 H 0.123 0.877 8 C -0.217 4.217 9 C -0.113 4.113 10 N -0.092 5.092 11 O 0.018 5.982 12 C -0.014 4.014 13 C 0.014 3.986 14 N -0.282 5.282 15 C -0.116 4.116 16 C -0.044 4.044 17 C -0.006 4.006 18 C -0.576 4.576 19 H 0.086 0.914 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.181 1.181 24 H -0.207 1.207 25 H -0.208 1.208 26 N -0.221 5.221 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.154 0.846 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.012 0.988 47 H 0.009 0.991 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.116 20.392 14.081 27.585 hybrid contribution 0.382 -1.521 -0.007 1.568 sum -11.734 18.871 14.074 26.304 Atomic orbital electron populations 1.21751 0.92362 1.02515 1.03158 1.21137 0.96938 0.96802 0.96826 1.21749 1.00599 0.95071 1.02364 1.22910 0.78835 1.00245 0.99532 1.87972 1.22218 1.78160 1.42948 1.20176 0.86927 0.94017 0.86850 0.87719 1.22196 1.04021 0.98435 0.97024 1.26075 0.99407 0.89268 0.96575 1.74638 1.00251 1.15323 1.19018 1.85319 1.37986 1.20087 1.54761 1.29047 0.92130 0.91812 0.88421 1.20768 0.98284 0.83885 0.95699 1.61894 1.03825 1.20252 1.42250 1.22322 0.89091 0.99506 1.00681 1.22056 0.94911 0.89512 0.97906 1.18977 0.95439 0.93556 0.92672 1.21671 1.17125 1.12672 1.06098 0.91402 1.25985 0.97606 1.00905 0.95522 1.70127 1.36652 1.39928 1.10809 0.85383 0.78724 0.78413 0.78407 1.18073 1.20738 1.20772 1.71863 1.10698 1.14104 1.25477 0.91127 0.91465 0.92277 0.92410 0.93960 0.92135 0.91535 0.92634 0.90708 0.92527 0.88535 0.90298 0.87861 0.84561 0.92308 0.92624 0.93903 0.89888 0.94203 0.98752 0.99134 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 71.98 0.66 -0.89 16 2 C -0.10 -1.57 3.16 -10.80 -0.03 -1.60 16 3 C -0.14 -2.15 9.09 71.98 0.65 -1.50 16 4 C 0.06 0.99 5.13 71.98 0.37 1.36 16 5 O -0.39 -9.26 9.51 -148.98 -1.42 -10.67 16 6 C 0.18 3.85 3.27 29.85 0.10 3.95 16 7 H 0.11 1.89 7.79 -2.38 -0.02 1.87 16 8 C -0.16 -2.53 9.51 71.98 0.68 -1.84 16 9 C 0.16 4.55 7.10 138.47 0.98 5.53 16 10 N -0.38 -12.26 12.16 -60.34 -0.73 -13.00 16 11 O 0.08 2.38 11.31 74.84 0.85 3.22 16 12 C 0.21 5.83 7.13 88.38 0.63 6.46 16 13 C 0.14 3.55 5.59 85.56 0.48 4.03 16 14 N -0.56 -18.81 4.75 -927.05 -4.41 -23.21 16 15 C 0.03 1.09 9.17 127.69 1.17 2.26 16 16 C 0.08 3.13 4.90 86.31 0.42 3.55 16 17 C 0.03 1.60 4.90 29.85 0.15 1.74 16 18 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 19 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 20 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 21 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 22 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 N -0.49 -13.91 10.84 -303.22 -3.29 -17.20 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.04 0.83 7.82 -2.38 -0.02 0.81 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.85 8.09 -2.39 -0.02 0.84 16 35 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 2.14 8.12 -2.39 -0.02 2.12 16 40 H 0.14 2.71 7.93 -2.39 -0.02 2.69 16 41 H 0.06 1.94 6.74 -2.38 -0.02 1.93 16 42 H 0.05 2.17 6.30 -2.39 -0.02 2.16 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.08 2.90 7.93 -2.39 -0.02 2.88 16 45 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 46 H -0.01 -0.32 6.47 -2.39 -0.02 -0.34 16 47 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 48 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -69.40 393.93 1.19 -68.21 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.92 Total: 9.66 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 6.96 Total: -5.92 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -8.14 Total: -110.08 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.57 Total: -7.45 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.40 1.19 -68.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173925097.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.914 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds