Wall clock time and date at job start Tue Mar 31 2020 11:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00348 * 2 1 4 4 H 1.09001 * 109.46545 * 329.99782 * 3 2 1 5 5 C 1.52994 * 109.47276 * 89.99859 * 3 2 1 6 6 C 1.50703 * 109.47085 * 210.00469 * 3 2 1 7 7 N 1.29944 * 126.28571 * 314.97134 * 6 3 2 8 8 O 1.21295 * 110.25258 * 180.02562 * 7 6 3 9 9 C 1.33643 * 109.81151 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.55202 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46965 * 270.02073 * 10 9 8 12 12 C 1.46902 * 110.99573 * 293.95399 * 11 10 9 13 13 C 1.50698 * 109.47003 * 70.00300 * 12 11 10 14 14 H 1.07998 * 120.00342 * 359.97438 * 13 12 11 15 15 C 1.37890 * 119.99674 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99382 * 179.97438 * 15 13 12 17 17 Si 1.86791 * 120.00045 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.46968 * 89.99996 * 17 15 13 19 19 H 1.48500 * 109.47186 * 209.99842 * 17 15 13 20 20 H 1.48501 * 109.47342 * 330.00210 * 17 15 13 21 21 C 1.46898 * 110.99888 * 170.00033 * 11 10 9 22 22 C 1.53006 * 109.46682 * 189.99906 * 21 11 10 23 23 C 1.53005 * 109.46855 * 179.97438 * 22 21 11 24 24 C 1.53005 * 109.47032 * 64.99978 * 23 22 21 25 25 C 1.52991 * 109.46924 * 185.00051 * 23 22 21 26 26 N 1.31124 * 106.89509 * 0.22468 * 9 8 7 27 27 H 1.09003 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46890 * 300.00181 * 1 2 3 29 29 H 1.09008 * 109.47052 * 60.00017 * 1 2 3 30 30 H 1.08999 * 109.47029 * 60.00056 * 5 3 2 31 31 H 1.08996 * 109.46980 * 180.02562 * 5 3 2 32 32 H 1.09003 * 109.47109 * 300.00061 * 5 3 2 33 33 H 1.08993 * 109.47133 * 150.02111 * 10 9 8 34 34 H 1.08996 * 109.47320 * 30.01851 * 10 9 8 35 35 H 1.09006 * 109.46743 * 190.00026 * 12 11 10 36 36 H 1.08993 * 109.47191 * 310.00039 * 12 11 10 37 37 H 0.97005 * 119.99434 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.46988 * 309.99510 * 21 11 10 39 39 H 1.08996 * 109.46945 * 69.99996 * 21 11 10 40 40 H 1.08999 * 109.47085 * 299.99544 * 22 21 11 41 41 H 1.08996 * 109.47357 * 60.00343 * 22 21 11 42 42 H 1.08999 * 109.47136 * 305.00216 * 23 22 21 43 43 H 1.09005 * 109.46642 * 59.99825 * 24 23 22 44 44 H 1.08993 * 109.47134 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.46935 * 299.99989 * 24 23 22 46 46 H 1.08996 * 109.47545 * 59.99879 * 25 23 22 47 47 H 1.09006 * 109.47187 * 180.02562 * 25 23 22 48 48 H 1.09006 * 109.47087 * 299.99720 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7713 1.4424 6 6 3.3386 1.2638 -0.7105 7 7 4.2663 0.3673 -0.5548 8 8 5.2142 0.6153 -1.2698 9 6 4.9742 1.7277 -1.9705 10 6 5.8971 2.3751 -2.9706 11 7 6.7613 3.3442 -2.2835 12 6 5.9759 4.4673 -1.7544 13 6 5.1300 3.9900 -0.6023 14 1 5.1712 2.9558 -0.2941 15 6 4.3032 4.8739 0.0585 16 7 3.5646 4.4572 1.0637 17 14 4.2324 6.6629 -0.4740 18 1 3.1761 6.8312 -1.5042 19 1 3.9194 7.5168 0.6999 20 1 5.5453 7.0629 -1.0412 21 6 7.8287 3.8210 -3.1730 22 6 8.8460 4.6267 -2.3625 23 6 9.9582 5.1227 -3.2888 24 6 9.3754 6.1097 -4.3024 25 6 11.0384 5.8208 -2.4603 26 7 3.7844 2.1511 -1.6176 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.8829 1.0774 1.9563 31 1 2.6607 2.7672 1.4424 32 1 1.2569 1.8015 1.9563 33 1 5.3074 2.8886 -3.7299 34 1 6.5132 1.6109 -3.4443 35 1 6.6500 5.2516 -1.4099 36 1 5.3311 4.8616 -2.5398 37 1 2.9827 5.0788 1.5283 38 1 8.3256 2.9675 -3.6342 39 1 7.3990 4.4543 -3.9491 40 1 8.3492 5.4802 -1.9013 41 1 9.2757 3.9933 -1.5864 42 1 10.3960 4.2757 -3.8169 43 1 8.9375 6.9567 -3.7742 44 1 10.1677 6.4634 -4.9620 45 1 8.6057 5.6122 -4.8926 46 1 11.4536 5.1178 -1.7383 47 1 11.8305 6.1747 -3.1203 48 1 10.6006 6.6679 -1.9323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177689521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:48 Heat of formation + Delta-G solvation = 39.366032 kcal Electronic energy + Delta-G solvation = -27600.585649 eV Core-core repulsion = 23888.124330 eV Total energy + Delta-G solvation = -3712.461319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.56346 -37.97474 -37.84479 -35.84831 -34.66045 -32.53038 -32.10869 -30.12847 -29.12163 -28.16542 -27.11823 -26.44144 -25.29746 -23.86679 -22.72189 -22.28234 -20.73717 -19.75801 -19.55923 -17.74720 -16.72762 -16.38530 -16.00018 -15.39152 -15.06794 -14.96325 -14.78566 -14.67071 -14.42208 -13.72753 -13.49401 -13.22062 -12.88848 -12.71875 -12.58656 -12.32116 -12.16352 -12.05043 -11.73189 -11.65477 -11.54440 -11.30142 -11.15221 -11.01825 -10.74377 -10.67287 -10.57201 -10.47487 -10.40141 -10.33381 -10.03761 -9.88010 -9.78572 -9.48392 -9.19563 -8.67307 -8.41766 -7.66166 -6.02888 -3.97438 2.16929 3.23318 3.30072 3.33099 3.34969 3.78882 3.91238 4.39482 4.55878 4.86090 4.97193 5.02364 5.05756 5.15199 5.26378 5.43269 5.45673 5.54261 5.59549 5.64595 5.66995 5.72685 5.78550 5.81654 5.83892 5.89922 5.92250 6.01018 6.02576 6.15020 6.17093 6.20578 6.29931 6.46687 6.52720 6.62499 6.65823 6.71699 6.78404 6.80041 7.11438 7.39556 7.50826 7.62682 7.69839 7.95091 8.59559 8.92215 9.25224 9.56801 11.05012 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016218 B = 0.004402 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.027904 B = 6358.750104 C = 7532.753924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.387 6.387 3 C 0.193 3.807 4 H 0.080 0.920 5 C -0.199 4.199 6 C 0.183 3.817 7 N -0.383 5.383 8 O 0.069 5.931 9 C 0.191 3.809 10 C 0.161 3.839 11 N -0.529 5.529 12 C 0.155 3.845 13 C -0.484 4.484 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.876 3.124 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.270 1.270 21 C 0.058 3.942 22 C -0.112 4.112 23 C -0.095 4.095 24 C -0.149 4.149 25 C -0.146 4.146 26 N -0.412 5.412 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.154 0.846 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.036 0.964 36 H -0.010 1.010 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.049 0.951 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -1.198 -8.454 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.306 6.306 3 C 0.134 3.866 4 H 0.098 0.902 5 C -0.257 4.257 6 C -0.090 4.090 7 N -0.092 5.092 8 O 0.009 5.991 9 C -0.030 4.030 10 C 0.031 3.969 11 N -0.254 5.254 12 C 0.029 3.971 13 C -0.523 4.523 14 H 0.095 0.905 15 C -0.123 4.123 16 N -0.535 5.535 17 Si 0.704 3.296 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.196 1.196 21 C -0.070 4.070 22 C -0.150 4.150 23 C -0.114 4.114 24 C -0.207 4.207 25 C -0.203 4.203 26 N -0.144 5.144 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.171 0.829 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.054 0.946 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.888 -1.937 -7.381 8.564 hybrid contribution -0.657 1.760 -0.724 2.013 sum 3.231 -0.177 -8.105 8.727 Atomic orbital electron populations 1.22726 0.81358 1.02173 0.99950 1.87917 1.19237 1.28222 1.95184 1.19909 0.86783 0.83782 0.96135 0.90190 1.22948 1.01434 1.08841 0.92490 1.25011 0.97941 0.88829 0.97240 1.74474 0.97255 1.24352 1.13106 1.85191 1.35399 1.38272 1.40239 1.27872 0.93264 0.86014 0.95847 1.20157 0.92093 0.95018 0.89661 1.61983 1.12503 1.16727 1.34211 1.20399 0.92299 0.89119 0.95305 1.21122 1.20685 0.98080 1.12380 0.90529 1.24662 0.95199 0.97888 0.94530 1.69186 1.27583 1.34455 1.22269 0.86856 0.78615 0.85925 0.78210 1.20502 1.21451 1.19556 1.22107 0.92858 0.97996 0.94046 1.21669 0.95173 1.00167 0.97995 1.21097 0.95894 0.98018 0.96410 1.21908 1.00535 0.99377 0.98853 1.21822 0.98121 1.00629 0.99752 1.72003 1.09384 1.21064 1.11992 0.89973 0.93991 0.94240 0.93253 0.82891 0.93780 0.91337 0.88893 0.94570 0.99203 0.92776 0.91442 0.95137 0.91361 0.91019 0.91432 0.92780 0.93257 0.92482 0.92651 0.93168 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.82 101.05 1.09 1.59 16 2 O -0.39 -7.57 10.33 -35.23 -0.36 -7.93 16 3 C 0.19 4.11 3.27 -27.88 -0.09 4.02 16 4 H 0.08 1.65 7.79 -51.93 -0.40 1.25 16 5 C -0.20 -4.34 9.51 37.15 0.35 -3.99 16 6 C 0.18 4.29 6.55 -156.37 -1.02 3.26 16 7 N -0.38 -9.05 12.16 30.90 0.38 -8.67 16 8 O 0.07 1.52 11.30 18.10 0.20 1.72 16 9 C 0.19 4.05 5.50 -13.06 -0.07 3.98 16 10 C 0.16 2.75 5.59 -4.97 -0.03 2.73 16 11 N -0.53 -9.89 4.56 -237.52 -1.08 -10.97 16 12 C 0.15 3.44 3.66 -4.98 -0.02 3.43 16 13 C -0.48 -12.67 6.89 -34.44 -0.24 -12.90 16 14 H 0.08 2.21 4.84 -52.49 -0.25 1.96 16 15 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.89 -24.48 10.77 55.43 0.60 -23.88 16 17 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 21 C 0.06 0.84 4.71 -3.82 -0.02 0.82 16 22 C -0.11 -1.59 4.64 -26.72 -0.12 -1.71 16 23 C -0.10 -1.07 2.92 -90.62 -0.26 -1.33 16 24 C -0.15 -1.61 8.95 37.16 0.33 -1.28 16 25 C -0.15 -1.53 9.19 37.15 0.34 -1.19 16 26 N -0.41 -9.67 8.96 -9.87 -0.09 -9.76 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.55 7.87 -51.93 -0.41 0.14 16 29 H 0.04 0.52 8.09 -51.92 -0.42 0.10 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.15 3.80 4.60 -51.93 -0.24 3.56 16 32 H 0.04 0.82 7.87 -51.93 -0.41 0.42 16 33 H 0.07 1.11 8.01 -51.93 -0.42 0.70 16 34 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 35 H 0.04 0.82 5.03 -51.93 -0.26 0.56 16 36 H -0.01 -0.22 7.41 -51.93 -0.39 -0.61 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 39 H 0.03 0.43 6.55 -51.93 -0.34 0.09 16 40 H 0.07 1.11 6.31 -51.93 -0.33 0.78 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -29.97 372.36 -7.27 -37.24 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.00 Total: 1.24 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 0.15 Total: -0.63 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.20 Total: -53.29 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.16 Total: -6.21 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.97 -7.27 -37.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177689521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.606 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds