Wall clock time and date at job start Tue Mar 31 2020 11:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00348 * 2 1 4 4 H 1.09001 * 109.46545 * 329.99782 * 3 2 1 5 5 C 1.52994 * 109.47276 * 89.99859 * 3 2 1 6 6 C 1.50703 * 109.47085 * 210.00469 * 3 2 1 7 7 N 1.29944 * 126.28571 * 314.97134 * 6 3 2 8 8 O 1.21295 * 110.25258 * 180.02562 * 7 6 3 9 9 C 1.33643 * 109.81151 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.55202 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46965 * 270.02073 * 10 9 8 12 12 C 1.46902 * 110.99573 * 293.95399 * 11 10 9 13 13 C 1.50698 * 109.47003 * 70.00300 * 12 11 10 14 14 H 1.07998 * 120.00342 * 359.97438 * 13 12 11 15 15 C 1.37890 * 119.99674 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99382 * 179.97438 * 15 13 12 17 17 Si 1.86791 * 120.00045 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.46968 * 89.99996 * 17 15 13 19 19 H 1.48500 * 109.47186 * 209.99842 * 17 15 13 20 20 H 1.48501 * 109.47342 * 330.00210 * 17 15 13 21 21 C 1.46898 * 110.99888 * 170.00033 * 11 10 9 22 22 C 1.53006 * 109.46682 * 189.99906 * 21 11 10 23 23 C 1.53005 * 109.46855 * 179.97438 * 22 21 11 24 24 C 1.53005 * 109.47032 * 64.99978 * 23 22 21 25 25 C 1.52991 * 109.46924 * 185.00051 * 23 22 21 26 26 N 1.31124 * 106.89509 * 0.22468 * 9 8 7 27 27 H 1.09003 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46890 * 300.00181 * 1 2 3 29 29 H 1.09008 * 109.47052 * 60.00017 * 1 2 3 30 30 H 1.08999 * 109.47029 * 60.00056 * 5 3 2 31 31 H 1.08996 * 109.46980 * 180.02562 * 5 3 2 32 32 H 1.09003 * 109.47109 * 300.00061 * 5 3 2 33 33 H 1.08993 * 109.47133 * 150.02111 * 10 9 8 34 34 H 1.08996 * 109.47320 * 30.01851 * 10 9 8 35 35 H 1.09006 * 109.46743 * 190.00026 * 12 11 10 36 36 H 1.08993 * 109.47191 * 310.00039 * 12 11 10 37 37 H 0.97005 * 119.99434 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.46988 * 309.99510 * 21 11 10 39 39 H 1.08996 * 109.46945 * 69.99996 * 21 11 10 40 40 H 1.08999 * 109.47085 * 299.99544 * 22 21 11 41 41 H 1.08996 * 109.47357 * 60.00343 * 22 21 11 42 42 H 1.08999 * 109.47136 * 305.00216 * 23 22 21 43 43 H 1.09005 * 109.46642 * 59.99825 * 24 23 22 44 44 H 1.08993 * 109.47134 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.46935 * 299.99989 * 24 23 22 46 46 H 1.08996 * 109.47545 * 59.99879 * 25 23 22 47 47 H 1.09006 * 109.47187 * 180.02562 * 25 23 22 48 48 H 1.09006 * 109.47087 * 299.99720 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7713 1.4424 6 6 3.3386 1.2638 -0.7105 7 7 4.2663 0.3673 -0.5548 8 8 5.2142 0.6153 -1.2698 9 6 4.9742 1.7277 -1.9705 10 6 5.8971 2.3751 -2.9706 11 7 6.7613 3.3442 -2.2835 12 6 5.9759 4.4673 -1.7544 13 6 5.1300 3.9900 -0.6023 14 1 5.1712 2.9558 -0.2941 15 6 4.3032 4.8739 0.0585 16 7 3.5646 4.4572 1.0637 17 14 4.2324 6.6629 -0.4740 18 1 3.1761 6.8312 -1.5042 19 1 3.9194 7.5168 0.6999 20 1 5.5453 7.0629 -1.0412 21 6 7.8287 3.8210 -3.1730 22 6 8.8460 4.6267 -2.3625 23 6 9.9582 5.1227 -3.2888 24 6 9.3754 6.1097 -4.3024 25 6 11.0384 5.8208 -2.4603 26 7 3.7844 2.1511 -1.6176 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.8829 1.0774 1.9563 31 1 2.6607 2.7672 1.4424 32 1 1.2569 1.8015 1.9563 33 1 5.3074 2.8886 -3.7299 34 1 6.5132 1.6109 -3.4443 35 1 6.6500 5.2516 -1.4099 36 1 5.3311 4.8616 -2.5398 37 1 2.9827 5.0788 1.5283 38 1 8.3256 2.9675 -3.6342 39 1 7.3990 4.4543 -3.9491 40 1 8.3492 5.4802 -1.9013 41 1 9.2757 3.9933 -1.5864 42 1 10.3960 4.2757 -3.8169 43 1 8.9375 6.9567 -3.7742 44 1 10.1677 6.4634 -4.9620 45 1 8.6057 5.6122 -4.8926 46 1 11.4536 5.1178 -1.7383 47 1 11.8305 6.1747 -3.1203 48 1 10.6006 6.6679 -1.9323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177689521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:47 Heat of formation + Delta-G solvation = 18.466536 kcal Electronic energy + Delta-G solvation = -27601.491919 eV Core-core repulsion = 23888.124330 eV Total energy + Delta-G solvation = -3713.367589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.29723 -39.35544 -39.30019 -37.05326 -36.25636 -34.48256 -33.69902 -31.75626 -30.52654 -29.82258 -27.94829 -27.71985 -26.75448 -25.55591 -24.36631 -23.85479 -22.17083 -21.32580 -20.62405 -19.57843 -18.41108 -18.22022 -17.49379 -16.71419 -16.61249 -16.41230 -16.17521 -16.09184 -15.81879 -15.28551 -14.54225 -14.50042 -14.30002 -14.23195 -14.16938 -13.70990 -13.63399 -13.35886 -13.13249 -13.03659 -12.96850 -12.74794 -12.48100 -12.44742 -12.38002 -12.25336 -11.96785 -11.84646 -11.71486 -11.60615 -11.48515 -11.43033 -11.25242 -11.19713 -10.80137 -10.55156 -10.31680 -9.11249 -8.03033 -6.01534 0.48989 1.36850 1.40169 1.45866 1.58748 2.20320 2.41221 2.43311 3.18462 3.23069 3.27424 3.50964 3.88502 3.99924 4.10999 4.15996 4.25197 4.30678 4.41205 4.47877 4.49675 4.51568 4.56214 4.69251 4.75651 4.75848 4.83566 4.87226 4.87939 4.93099 4.94676 5.05302 5.06833 5.08369 5.13709 5.24680 5.27532 5.38680 5.43901 5.54358 5.58448 5.63264 5.83943 6.05734 6.14064 6.32866 6.68419 6.88254 7.53738 7.54849 9.04695 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016218 B = 0.004402 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.027904 B = 6358.750104 C = 7532.753924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.198 3.802 4 H 0.082 0.918 5 C -0.192 4.192 6 C 0.171 3.829 7 N -0.405 5.405 8 O 0.067 5.933 9 C 0.198 3.802 10 C 0.158 3.842 11 N -0.544 5.544 12 C 0.166 3.834 13 C -0.484 4.484 14 H 0.045 0.955 15 C 0.029 3.971 16 N -0.919 5.919 17 Si 0.927 3.073 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.258 1.258 21 C 0.059 3.941 22 C -0.110 4.110 23 C -0.089 4.089 24 C -0.149 4.149 25 C -0.146 4.146 26 N -0.442 5.442 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.032 0.968 36 H -0.013 1.013 37 H 0.260 0.740 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.079 -1.037 -10.637 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.139 3.861 4 H 0.100 0.900 5 C -0.250 4.250 6 C -0.102 4.102 7 N -0.115 5.115 8 O 0.008 5.992 9 C -0.023 4.023 10 C 0.029 3.971 11 N -0.269 5.269 12 C 0.039 3.961 13 C -0.523 4.523 14 H 0.063 0.937 15 C -0.168 4.168 16 N -0.560 5.560 17 Si 0.754 3.246 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.183 1.183 21 C -0.068 4.068 22 C -0.148 4.148 23 C -0.108 4.108 24 C -0.206 4.206 25 C -0.204 4.204 26 N -0.174 5.174 27 H 0.127 0.873 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.146 0.854 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.156 0.844 35 H 0.050 0.950 36 H 0.004 0.996 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.838 -1.777 -9.585 10.883 hybrid contribution -0.941 1.628 -0.032 1.881 sum 3.896 -0.149 -9.617 10.377 Atomic orbital electron populations 1.23060 0.78625 1.04360 1.01037 1.87890 1.22204 1.26984 1.95262 1.19791 0.86311 0.84761 0.95267 0.90035 1.22787 1.02174 1.06727 0.93332 1.25450 0.98697 0.88738 0.97332 1.74426 0.97773 1.25215 1.14135 1.85138 1.34992 1.38773 1.40265 1.28748 0.93156 0.85236 0.95195 1.20545 0.92312 0.95748 0.88527 1.61857 1.12894 1.15791 1.36407 1.20111 0.91873 0.90144 0.93962 1.21269 1.21033 0.96581 1.13387 0.93736 1.25331 0.95357 1.01200 0.94944 1.69392 1.28227 1.35194 1.23228 0.86026 0.78940 0.82022 0.77573 1.20551 1.21837 1.18259 1.22251 0.91564 0.99449 0.93518 1.21640 0.95896 0.98886 0.98348 1.21064 0.94939 0.98772 0.96005 1.21903 1.01122 0.98769 0.98797 1.21827 0.98369 1.00189 0.99976 1.71967 1.10780 1.21781 1.12919 0.87263 0.92915 0.93121 0.95088 0.85393 0.91162 0.89984 0.84352 0.95031 0.99571 0.93097 0.88238 0.94042 0.94075 0.92250 0.89621 0.94154 0.91505 0.92247 0.92744 0.91410 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 10.82 113.37 1.23 1.90 16 2 O -0.40 -15.71 10.33 -148.98 -1.54 -17.25 16 3 C 0.20 8.56 3.27 29.85 0.10 8.66 16 4 H 0.08 3.42 7.79 -2.39 -0.02 3.40 16 5 C -0.19 -8.57 9.51 71.98 0.68 -7.89 16 6 C 0.17 8.17 6.55 138.46 0.91 9.08 16 7 N -0.41 -19.53 12.16 -60.34 -0.73 -20.27 16 8 O 0.07 2.97 11.30 74.84 0.85 3.82 16 9 C 0.20 8.29 5.50 88.38 0.49 8.78 16 10 C 0.16 5.05 5.59 85.56 0.48 5.52 16 11 N -0.54 -19.38 4.56 -905.37 -4.13 -23.51 16 12 C 0.17 7.28 3.66 85.56 0.31 7.59 16 13 C -0.48 -25.64 6.89 25.60 0.18 -25.46 16 14 H 0.04 2.63 4.84 -2.91 -0.01 2.62 16 15 C 0.03 1.56 5.47 84.66 0.46 2.02 16 16 N -0.92 -51.71 10.77 21.45 0.23 -51.48 16 17 Si 0.93 42.94 27.47 68.60 1.88 44.83 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.26 -11.31 6.54 99.48 0.65 -10.66 16 21 C 0.06 1.53 4.71 86.31 0.41 1.94 16 22 C -0.11 -2.93 4.64 30.60 0.14 -2.78 16 23 C -0.09 -1.76 2.92 -10.79 -0.03 -1.79 16 24 C -0.15 -2.79 8.95 71.98 0.64 -2.15 16 25 C -0.15 -2.77 9.19 71.98 0.66 -2.11 16 26 N -0.44 -20.99 8.96 -303.22 -2.72 -23.71 16 27 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 1.31 7.87 -2.39 -0.02 1.29 16 29 H 0.05 1.25 8.09 -2.38 -0.02 1.23 16 30 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.13 6.58 4.60 -2.39 -0.01 6.57 16 32 H 0.07 2.65 7.87 -2.39 -0.02 2.63 16 33 H 0.08 2.44 8.01 -2.39 -0.02 2.42 16 34 H 0.14 3.14 7.93 -2.39 -0.02 3.12 16 35 H 0.03 1.42 5.03 -2.38 -0.01 1.41 16 36 H -0.01 -0.59 7.41 -2.39 -0.02 -0.61 16 37 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 38 H 0.10 2.00 7.93 -2.39 -0.02 1.98 16 39 H 0.04 1.02 6.55 -2.39 -0.02 1.01 16 40 H 0.04 1.31 6.31 -2.39 -0.02 1.29 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.08 6.57 -2.39 -0.02 1.06 16 46 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 48 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -67.05 372.36 1.38 -65.67 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.89 Total: 18.57 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 6.66 Total: 3.32 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -7.35 Total: -118.96 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.69 Total: -13.43 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Total: -67.05 1.38 -65.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177689521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.139 kcal (2) G-P(sol) polarization free energy of solvation -67.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds