Wall clock time and date at job start Tue Mar 31 2020 11:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47316 * 2 1 4 4 C 1.53001 * 109.46896 * 119.99877 * 2 1 3 5 5 C 1.52995 * 109.47273 * 59.16644 * 4 2 1 6 6 C 1.53007 * 109.46965 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47039 * 59.99871 * 6 5 4 8 8 C 1.53000 * 109.47116 * 299.99423 * 7 6 5 9 9 C 1.52998 * 109.47091 * 299.16083 * 4 2 1 10 10 N 1.46499 * 109.47351 * 239.99793 * 2 1 3 11 11 C 1.46503 * 119.99774 * 354.25449 * 10 2 1 12 12 C 1.34773 * 120.00281 * 174.53108 * 10 2 1 13 13 O 1.21586 * 120.00106 * 359.72719 * 12 10 2 14 14 N 1.34777 * 120.00087 * 179.72204 * 12 10 2 15 15 C 1.46497 * 120.00052 * 179.97438 * 14 12 10 16 16 C 1.50699 * 109.47368 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00291 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99902 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00168 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99757 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99866 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99977 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47181 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47063 * 119.99704 * 23 21 19 26 26 H 1.48496 * 109.47012 * 239.99503 * 23 21 19 27 27 H 1.08997 * 109.47111 * 60.00104 * 1 2 3 28 28 H 1.09003 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46982 * 300.00064 * 1 2 3 30 30 H 1.09007 * 109.47180 * 179.16548 * 4 2 1 31 31 H 1.09001 * 109.47175 * 299.99398 * 5 4 2 32 32 H 1.08997 * 109.47312 * 59.99825 * 5 4 2 33 33 H 1.09000 * 109.47199 * 299.99481 * 6 5 4 34 34 H 1.08996 * 109.46900 * 179.97438 * 6 5 4 35 35 H 1.09011 * 109.46849 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47477 * 60.00315 * 7 6 5 37 37 H 1.08993 * 109.47452 * 300.00151 * 8 7 6 38 38 H 1.09006 * 109.46994 * 179.97438 * 8 7 6 39 39 H 1.08996 * 109.47273 * 300.00178 * 9 4 2 40 40 H 1.09001 * 109.47144 * 60.00732 * 9 4 2 41 41 H 1.09002 * 109.46892 * 85.63550 * 11 10 2 42 42 H 1.09002 * 109.47179 * 205.63069 * 11 10 2 43 43 H 1.09000 * 109.47374 * 325.63510 * 11 10 2 44 44 H 0.97002 * 119.99820 * 0.02562 * 14 12 10 45 45 H 1.08999 * 109.47728 * 300.00776 * 15 14 12 46 46 H 1.09008 * 109.46869 * 60.00392 * 15 14 12 47 47 H 0.96999 * 119.99441 * 0.02562 * 18 16 15 48 48 H 0.96998 * 119.99411 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5129 -2.1575 1.2599 6 6 2.0235 -2.8789 2.5089 7 6 1.5312 -2.1457 3.7582 8 6 2.0584 -0.7095 3.7477 9 6 1.5473 0.0121 2.4984 10 7 2.0184 -0.6906 -1.1961 11 6 1.0724 -1.3564 -2.0951 12 6 3.3384 -0.7183 -1.4666 13 8 4.1236 -0.1659 -0.7205 14 7 3.7882 -1.3585 -2.5640 15 6 5.2230 -1.3881 -2.8582 16 6 5.4591 -2.1604 -4.1306 17 8 4.5210 -2.6386 -4.7326 18 7 6.7126 -2.3198 -4.5995 19 6 6.9272 -3.0219 -5.7573 20 1 6.0918 -3.4470 -6.2938 21 6 8.2195 -3.1866 -6.2405 22 7 9.2360 -2.6689 -5.5878 23 14 8.5120 -4.1427 -7.8184 24 1 7.2125 -4.6187 -8.3568 25 1 9.1690 -3.2613 -8.8167 26 1 9.3870 -5.3087 -7.5357 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.1300 -0.7342 1.2419 31 1 0.4230 -2.1445 1.2674 32 1 1.8640 -2.6799 0.3700 33 1 3.1134 -2.8919 2.5010 34 1 1.6476 -3.9020 2.5167 35 1 1.8953 -2.6595 4.6481 36 1 0.4413 -2.1328 3.7662 37 1 3.1482 -0.7225 3.7398 38 1 1.7073 -0.1870 4.6376 39 1 1.9228 1.0353 2.4908 40 1 0.4574 0.0251 2.5059 41 1 0.6818 -0.6336 -2.8114 42 1 1.5818 -2.1584 -2.6293 43 1 0.2498 -1.7724 -1.5135 44 1 3.1618 -1.7990 -3.1594 45 1 5.5904 -0.3690 -2.9787 46 1 5.7525 -1.8704 -2.0365 47 1 7.4628 -1.9377 -4.1178 48 1 10.1381 -2.7837 -5.9254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358303655.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:50 Heat of formation + Delta-G solvation = -83.173029 kcal Electronic energy + Delta-G solvation = -26746.367205 eV Core-core repulsion = 23028.592194 eV Total energy + Delta-G solvation = -3717.775012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51882 -38.85447 -38.04158 -35.88988 -34.45980 -33.74423 -32.21194 -31.33739 -30.82215 -28.97174 -27.35378 -27.17516 -24.56855 -23.42731 -22.75593 -21.30924 -19.79898 -19.62913 -18.97234 -18.17417 -17.67562 -16.36107 -16.19183 -15.53869 -15.18529 -14.97243 -14.74982 -14.45969 -14.34959 -14.26516 -14.01302 -13.79696 -13.45815 -13.09903 -12.72589 -12.65565 -12.48878 -12.25855 -12.18729 -11.93917 -11.87588 -11.86083 -11.62256 -11.61104 -11.13564 -11.06712 -10.92126 -10.49666 -10.40218 -10.31522 -10.27716 -10.10713 -9.73688 -9.63417 -8.81997 -8.60577 -8.33265 -8.08377 -6.50186 -3.92057 2.77401 3.10975 3.23029 3.29739 3.44553 3.77114 4.04225 4.20305 4.54728 4.58853 4.65888 4.84121 4.91073 4.99745 5.04977 5.10138 5.18714 5.21888 5.23433 5.34966 5.36955 5.42758 5.44982 5.50916 5.56122 5.65018 5.79233 5.82524 5.88760 5.92173 5.96229 6.01750 6.04330 6.09725 6.11928 6.12989 6.16706 6.27515 6.42234 6.67852 6.82308 7.11430 7.47416 7.94225 8.23277 8.46928 8.85854 9.06181 9.41357 9.89238 10.66868 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.024598 B = 0.002602 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.009147 B =10757.243531 C =11135.862757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.074 0.926 4 C -0.104 4.104 5 C -0.110 4.110 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.111 4.111 10 N -0.629 5.629 11 C 0.074 3.926 12 C 0.707 3.293 13 O -0.594 6.594 14 N -0.726 5.726 15 C 0.128 3.872 16 C 0.430 3.570 17 O -0.599 6.599 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.406 0.594 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.396 0.604 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.966 3.921 15.540 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.068 3.932 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.147 4.147 6 C -0.158 4.158 7 C -0.155 4.155 8 C -0.156 4.156 9 C -0.149 4.149 10 N -0.367 5.367 11 C -0.070 4.070 12 C 0.408 3.592 13 O -0.473 6.473 14 N -0.385 5.385 15 C -0.001 4.001 16 C 0.215 3.785 17 O -0.485 6.485 18 N -0.185 5.185 19 C -0.433 4.433 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.246 0.754 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.230 0.770 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.783 3.990 15.593 23.254 hybrid contribution 0.483 -0.483 -0.859 1.097 sum -16.300 3.507 14.734 22.251 Atomic orbital electron populations 1.22236 0.94487 1.02721 1.02618 1.20781 0.93438 0.95718 0.83289 0.90787 1.21600 1.02644 0.94708 0.93367 1.21554 0.99994 0.95431 0.97743 1.21528 1.01059 0.98510 0.94668 1.21520 1.00391 0.95824 0.97737 1.21526 1.01001 0.95603 0.97506 1.21589 1.00393 0.98913 0.93988 1.47047 1.04756 1.58543 1.26393 1.21800 0.93990 0.97407 0.93782 1.15763 0.82007 0.79776 0.81691 1.90874 1.54594 1.51131 1.50673 1.44979 1.08798 1.58227 1.26497 1.20769 0.81095 1.01140 0.97068 1.19779 0.84367 0.86548 0.87768 1.90482 1.42058 1.54753 1.61233 1.41796 1.06111 1.47292 1.23277 1.19770 0.93848 1.29539 1.00151 0.87660 1.25327 0.94991 0.97788 0.99678 1.69628 0.99560 1.44551 1.39763 0.85762 0.78644 0.78941 0.80764 1.19155 1.20623 1.20629 0.92085 0.91456 0.90901 0.89121 0.92220 0.92083 0.92022 0.92373 0.92428 0.92286 0.91921 0.92308 0.92002 0.91942 0.92718 0.91042 0.90816 0.75440 0.90111 0.90131 0.77024 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 7.41 37.16 0.28 -0.97 16 2 C 0.17 1.87 2.40 -67.93 -0.16 1.71 16 3 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 4 C -0.10 -1.14 1.89 -90.62 -0.17 -1.31 16 5 C -0.11 -1.11 4.68 -26.73 -0.13 -1.24 16 6 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 8 C -0.12 -1.02 5.93 -26.70 -0.16 -1.18 16 9 C -0.11 -0.98 4.87 -26.70 -0.13 -1.11 16 10 N -0.63 -8.04 2.28 -179.67 -0.41 -8.45 16 11 C 0.07 0.74 9.35 59.85 0.56 1.30 16 12 C 0.71 11.86 8.01 -86.92 -0.70 11.17 16 13 O -0.59 -11.64 14.84 5.29 0.08 -11.56 16 14 N -0.73 -12.70 5.40 -66.42 -0.36 -13.06 16 15 C 0.13 2.44 6.15 -5.20 -0.03 2.41 16 16 C 0.43 9.99 7.85 -10.98 -0.09 9.90 16 17 O -0.60 -15.40 15.24 5.55 0.08 -15.32 16 18 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 20 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.65 5.50 -17.46 -0.10 0.56 16 22 N -0.89 -24.04 13.05 55.50 0.72 -23.32 16 23 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.06 0.45 7.91 -51.93 -0.41 0.03 16 28 H 0.07 0.48 4.94 -51.93 -0.26 0.22 16 29 H 0.07 0.47 6.45 -51.93 -0.33 0.14 16 30 H 0.09 1.33 6.57 -51.92 -0.34 0.98 16 31 H 0.06 0.52 6.41 -51.93 -0.33 0.19 16 32 H 0.06 0.72 7.63 -51.93 -0.40 0.33 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.47 6.45 -51.93 -0.33 0.14 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.79 6.13 -51.93 -0.32 0.47 16 43 H 0.07 0.58 6.05 -51.93 -0.31 0.27 16 44 H 0.41 6.96 5.07 -40.82 -0.21 6.75 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 47 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -31.11 369.06 -8.41 -39.53 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -7.73 Total: 14.50 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.28 Total: 10.36 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.10 Total: -58.66 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: 0.16 Total: -26.88 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.11 -8.41 -39.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358303655.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.646 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds