Wall clock time and date at job start Tue Mar 31 2020 11:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47316 * 2 1 4 4 C 1.53001 * 109.46896 * 119.99877 * 2 1 3 5 5 C 1.52995 * 109.47273 * 59.16644 * 4 2 1 6 6 C 1.53007 * 109.46965 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47039 * 59.99871 * 6 5 4 8 8 C 1.53000 * 109.47116 * 299.99423 * 7 6 5 9 9 C 1.52998 * 109.47091 * 299.16083 * 4 2 1 10 10 N 1.46499 * 109.47351 * 239.99793 * 2 1 3 11 11 C 1.46503 * 119.99774 * 354.25449 * 10 2 1 12 12 C 1.34773 * 120.00281 * 174.53108 * 10 2 1 13 13 O 1.21586 * 120.00106 * 359.72719 * 12 10 2 14 14 N 1.34777 * 120.00087 * 179.72204 * 12 10 2 15 15 C 1.46497 * 120.00052 * 179.97438 * 14 12 10 16 16 C 1.50699 * 109.47368 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00291 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99902 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00168 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99757 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99866 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99977 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47181 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47063 * 119.99704 * 23 21 19 26 26 H 1.48496 * 109.47012 * 239.99503 * 23 21 19 27 27 H 1.08997 * 109.47111 * 60.00104 * 1 2 3 28 28 H 1.09003 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46982 * 300.00064 * 1 2 3 30 30 H 1.09007 * 109.47180 * 179.16548 * 4 2 1 31 31 H 1.09001 * 109.47175 * 299.99398 * 5 4 2 32 32 H 1.08997 * 109.47312 * 59.99825 * 5 4 2 33 33 H 1.09000 * 109.47199 * 299.99481 * 6 5 4 34 34 H 1.08996 * 109.46900 * 179.97438 * 6 5 4 35 35 H 1.09011 * 109.46849 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47477 * 60.00315 * 7 6 5 37 37 H 1.08993 * 109.47452 * 300.00151 * 8 7 6 38 38 H 1.09006 * 109.46994 * 179.97438 * 8 7 6 39 39 H 1.08996 * 109.47273 * 300.00178 * 9 4 2 40 40 H 1.09001 * 109.47144 * 60.00732 * 9 4 2 41 41 H 1.09002 * 109.46892 * 85.63550 * 11 10 2 42 42 H 1.09002 * 109.47179 * 205.63069 * 11 10 2 43 43 H 1.09000 * 109.47374 * 325.63510 * 11 10 2 44 44 H 0.97002 * 119.99820 * 0.02562 * 14 12 10 45 45 H 1.08999 * 109.47728 * 300.00776 * 15 14 12 46 46 H 1.09008 * 109.46869 * 60.00392 * 15 14 12 47 47 H 0.96999 * 119.99441 * 0.02562 * 18 16 15 48 48 H 0.96998 * 119.99411 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5129 -2.1575 1.2599 6 6 2.0235 -2.8789 2.5089 7 6 1.5312 -2.1457 3.7582 8 6 2.0584 -0.7095 3.7477 9 6 1.5473 0.0121 2.4984 10 7 2.0184 -0.6906 -1.1961 11 6 1.0724 -1.3564 -2.0951 12 6 3.3384 -0.7183 -1.4666 13 8 4.1236 -0.1659 -0.7205 14 7 3.7882 -1.3585 -2.5640 15 6 5.2230 -1.3881 -2.8582 16 6 5.4591 -2.1604 -4.1306 17 8 4.5210 -2.6386 -4.7326 18 7 6.7126 -2.3198 -4.5995 19 6 6.9272 -3.0219 -5.7573 20 1 6.0918 -3.4470 -6.2938 21 6 8.2195 -3.1866 -6.2405 22 7 9.2360 -2.6689 -5.5878 23 14 8.5120 -4.1427 -7.8184 24 1 7.2125 -4.6187 -8.3568 25 1 9.1690 -3.2613 -8.8167 26 1 9.3870 -5.3087 -7.5357 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.1300 -0.7342 1.2419 31 1 0.4230 -2.1445 1.2674 32 1 1.8640 -2.6799 0.3700 33 1 3.1134 -2.8919 2.5010 34 1 1.6476 -3.9020 2.5167 35 1 1.8953 -2.6595 4.6481 36 1 0.4413 -2.1328 3.7662 37 1 3.1482 -0.7225 3.7398 38 1 1.7073 -0.1870 4.6376 39 1 1.9228 1.0353 2.4908 40 1 0.4574 0.0251 2.5059 41 1 0.6818 -0.6336 -2.8114 42 1 1.5818 -2.1584 -2.6293 43 1 0.2498 -1.7724 -1.5135 44 1 3.1618 -1.7990 -3.1594 45 1 5.5904 -0.3690 -2.9787 46 1 5.7525 -1.8704 -2.0365 47 1 7.4628 -1.9377 -4.1178 48 1 10.1381 -2.7837 -5.9254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358303655.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:49 Heat of formation + Delta-G solvation = -102.791549 kcal Electronic energy + Delta-G solvation = -26747.217928 eV Core-core repulsion = 23028.592194 eV Total energy + Delta-G solvation = -3718.625735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67836 -40.32257 -39.43342 -36.91741 -36.25953 -35.38651 -33.44262 -33.09465 -31.58014 -29.85534 -28.86377 -28.07639 -26.42016 -24.34680 -23.52322 -22.30892 -21.38402 -20.80413 -20.25040 -19.89567 -18.99626 -17.63874 -17.29005 -17.22967 -16.56417 -16.37613 -16.05170 -15.89803 -15.51665 -15.27705 -15.09732 -15.03237 -14.83457 -14.21581 -14.00291 -13.57060 -13.54290 -13.45492 -13.40732 -13.20222 -12.99732 -12.92036 -12.73424 -12.58657 -12.45358 -12.40504 -12.11410 -11.87744 -11.63861 -11.58862 -11.40136 -11.13518 -10.90003 -10.86940 -10.57021 -10.25147 -10.10054 -9.41909 -8.51843 -6.02167 1.34506 1.41971 1.54441 1.60762 1.88133 2.13107 2.27586 2.87453 3.15277 3.16892 3.74265 3.81863 3.89524 4.07705 4.20303 4.21724 4.27809 4.36809 4.40234 4.43270 4.46221 4.52128 4.57409 4.62447 4.67628 4.71721 4.78135 4.87170 4.87862 5.03329 5.14980 5.17832 5.23411 5.27566 5.30110 5.34417 5.36384 5.39212 5.42249 5.48951 5.58252 5.76173 5.91471 5.94595 6.46793 6.93941 7.02434 7.41283 7.54411 7.92837 8.65451 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.024598 B = 0.002602 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.009147 B =10757.243531 C =11135.862757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.165 3.835 3 H 0.056 0.944 4 C -0.099 4.099 5 C -0.104 4.104 6 C -0.122 4.122 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.106 4.106 10 N -0.621 5.621 11 C 0.069 3.931 12 C 0.701 3.299 13 O -0.627 6.627 14 N -0.727 5.727 15 C 0.142 3.858 16 C 0.435 3.565 17 O -0.623 6.623 18 N -0.559 5.559 19 C -0.336 4.336 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.917 5.917 23 Si 0.998 3.002 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.409 0.591 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.398 0.602 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.178 3.809 16.059 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.142 4.142 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.158 4.158 9 C -0.144 4.144 10 N -0.357 5.357 11 C -0.074 4.074 12 C 0.402 3.598 13 O -0.509 6.509 14 N -0.387 5.387 15 C 0.013 3.987 16 C 0.222 3.778 17 O -0.511 6.511 18 N -0.195 5.195 19 C -0.465 4.465 20 H 0.105 0.895 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.248 0.752 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.232 0.768 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.031 3.887 16.131 25.249 hybrid contribution 1.145 -0.422 -0.969 1.558 sum -17.885 3.465 15.163 23.702 Atomic orbital electron populations 1.22213 0.91086 1.03878 1.03996 1.20989 0.95948 0.94444 0.82396 0.92597 1.21491 0.99929 0.95842 0.94650 1.21515 1.01308 0.94392 0.96958 1.21541 0.99591 0.99337 0.95501 1.21498 1.01360 0.95153 0.96968 1.21542 0.99812 0.96258 0.98142 1.21576 1.01754 0.98253 0.92810 1.47164 1.03571 1.57892 1.27115 1.22015 0.93961 0.97345 0.94032 1.15951 0.83306 0.79455 0.81048 1.90851 1.55995 1.52500 1.51539 1.44922 1.07984 1.58777 1.27042 1.20548 0.82542 1.00739 0.94890 1.20367 0.83477 0.85636 0.88344 1.90455 1.42701 1.55633 1.62332 1.41843 1.06784 1.47660 1.23171 1.19777 0.93998 1.31275 1.01442 0.89519 1.26158 0.94281 0.98209 1.02579 1.69696 1.00018 1.44972 1.41013 0.84795 0.78389 0.77815 0.76878 1.19351 1.19602 1.19621 0.91307 0.90254 0.89017 0.93680 0.89685 0.94249 0.94529 0.91511 0.91877 0.90470 0.94030 0.90557 0.92485 0.89427 0.91370 0.92197 0.87826 0.75157 0.89348 0.89500 0.76754 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 7.41 71.98 0.53 -1.30 16 2 C 0.17 3.45 2.40 44.99 0.11 3.55 16 3 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 4 C -0.10 -2.15 1.89 -10.80 -0.02 -2.17 16 5 C -0.10 -1.99 4.68 30.60 0.14 -1.84 16 6 C -0.12 -2.28 5.92 30.59 0.18 -2.10 16 7 C -0.11 -1.64 5.92 30.59 0.18 -1.46 16 8 C -0.12 -1.92 5.93 30.61 0.18 -1.73 16 9 C -0.11 -1.71 4.87 30.61 0.15 -1.57 16 10 N -0.62 -15.56 2.28 -840.61 -1.91 -17.47 16 11 C 0.07 1.27 9.35 127.77 1.19 2.47 16 12 C 0.70 24.02 8.01 179.06 1.43 25.45 16 13 O -0.63 -25.53 14.84 -3.99 -0.06 -25.59 16 14 N -0.73 -25.89 5.40 -482.30 -2.60 -28.50 16 15 C 0.14 5.53 6.15 85.63 0.53 6.06 16 16 C 0.43 20.65 7.85 87.66 0.69 21.34 16 17 O -0.62 -32.70 15.24 -3.06 -0.05 -32.75 16 18 N -0.56 -28.68 5.29 -306.99 -1.62 -30.30 16 19 C -0.34 -18.69 9.68 84.04 0.81 -17.88 16 20 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 23 Si 1.00 42.04 29.55 68.60 2.03 44.07 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 27 H 0.07 0.76 7.91 -2.39 -0.02 0.74 16 28 H 0.08 0.77 4.94 -2.39 -0.01 0.76 16 29 H 0.09 0.80 6.45 -2.39 -0.02 0.78 16 30 H 0.04 1.40 6.57 -2.38 -0.02 1.38 16 31 H 0.08 1.19 6.41 -2.39 -0.02 1.18 16 32 H 0.04 0.91 7.63 -2.39 -0.02 0.90 16 33 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.00 6.45 -2.39 -0.02 0.98 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.28 6.13 -2.39 -0.01 1.26 16 43 H 0.10 1.31 6.05 -2.39 -0.01 1.29 16 44 H 0.41 14.16 5.07 -92.71 -0.47 13.69 16 45 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 47 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 48 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -68.76 369.06 2.42 -66.34 By element: Atomic # 1 Polarization: 44.77 SS G_CDS: -0.23 Total: 44.55 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 6.58 Total: 28.66 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -5.86 Total: -125.28 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -0.11 Total: -58.34 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -68.76 2.42 -66.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358303655.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.449 kcal (2) G-P(sol) polarization free energy of solvation -68.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds