Wall clock time and date at job start Tue Mar 31 2020 11:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.56504 * 2 1 4 4 C 1.50435 * 109.56441 * 120.35352 * 2 1 3 5 5 O 1.21276 * 118.49190 * 287.13882 * 4 2 1 6 6 N 1.33381 * 123.02042 * 107.11667 * 4 2 1 7 7 C 1.46502 * 117.70737 * 184.33628 * 6 4 2 8 8 C 1.45652 * 124.59159 * 4.31727 * 6 4 2 9 9 C 1.53469 * 110.73645 * 337.98329 * 8 6 4 10 10 N 1.47048 * 109.56702 * 239.76483 * 2 1 3 11 11 C 1.34771 * 121.35363 * 102.89288 * 10 2 1 12 12 O 1.21593 * 119.99641 * 184.92340 * 11 10 2 13 13 N 1.34771 * 120.00368 * 4.92668 * 11 10 2 14 14 C 1.46494 * 120.00404 * 174.91101 * 13 11 10 15 15 C 1.53007 * 109.47461 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46952 * 59.99738 * 15 14 13 17 17 C 1.52995 * 109.46729 * 300.00015 * 15 14 13 18 18 C 1.52995 * 109.46992 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.46875 * 180.02562 * 18 15 14 20 20 H 1.08007 * 119.99955 * 359.97438 * 19 18 15 21 21 C 1.37876 * 120.00303 * 180.02562 * 19 18 15 22 22 N 1.31525 * 119.99735 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00337 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47225 * 59.99617 * 23 21 19 25 25 H 1.48505 * 109.47266 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47088 * 299.99784 * 23 21 19 27 27 H 1.09001 * 109.46621 * 180.23459 * 1 2 3 28 28 H 1.08995 * 109.47183 * 300.23570 * 1 2 3 29 29 H 1.09001 * 109.46736 * 60.23852 * 1 2 3 30 30 H 1.08998 * 109.46905 * 0.02562 * 7 6 4 31 31 H 1.08999 * 109.46758 * 119.99811 * 7 6 4 32 32 H 1.08998 * 109.47695 * 240.00180 * 7 6 4 33 33 H 1.09003 * 109.21853 * 98.42733 * 8 6 4 34 34 H 1.08998 * 109.21979 * 217.80750 * 8 6 4 35 35 H 1.09002 * 109.84366 * 287.31035 * 9 8 6 36 36 H 1.08999 * 109.84224 * 166.50628 * 9 8 6 37 37 H 0.97001 * 119.99842 * 354.90513 * 13 11 10 38 38 H 1.08995 * 109.47460 * 59.99585 * 14 13 11 39 39 H 1.09006 * 109.47070 * 299.99512 * 14 13 11 40 40 H 1.08997 * 109.46825 * 180.02562 * 16 15 14 41 41 H 1.09001 * 109.47183 * 300.00080 * 16 15 14 42 42 H 1.08995 * 109.47233 * 60.00053 * 16 15 14 43 43 H 1.09003 * 109.47217 * 299.99489 * 17 15 14 44 44 H 1.09001 * 109.47449 * 59.99893 * 17 15 14 45 45 H 1.08997 * 109.46842 * 180.02562 * 17 15 14 46 46 H 1.09006 * 109.47537 * 299.99657 * 18 15 14 47 47 H 1.08995 * 109.47462 * 60.00017 * 18 15 14 48 48 H 0.96994 * 119.99762 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0339 -0.7163 1.2232 5 8 1.9316 -0.1660 2.2991 6 7 2.5874 -1.9290 1.1790 7 6 2.9495 -2.5593 2.4509 8 6 2.8568 -2.6709 -0.0452 9 6 1.9679 -2.1693 -1.1913 10 7 2.0226 -0.6977 -1.1971 11 6 2.4994 -0.0178 -2.2586 12 8 2.8168 -0.6140 -3.2697 13 7 2.6245 1.3227 -2.1994 14 6 3.2457 2.0502 -3.3089 15 6 3.2629 3.5469 -2.9915 16 6 4.0652 3.7875 -1.7110 17 6 1.8290 4.0431 -2.7956 18 6 3.9123 4.3064 -4.1500 19 6 3.9298 5.7805 -3.8370 20 1 3.5184 6.1397 -2.9052 21 6 4.4699 6.6708 -4.7407 22 7 4.9704 6.2335 -5.8757 23 14 4.4909 8.4980 -4.3532 24 1 5.2695 8.7315 -3.1104 25 1 5.1213 9.2353 -5.4776 26 1 3.0991 8.9797 -4.1632 27 1 -0.3632 -1.0277 0.0042 28 1 -0.3633 0.5175 0.8878 29 1 -0.3633 0.5101 -0.8921 30 1 2.6905 -1.8927 3.2734 31 1 2.4055 -3.4977 2.5592 32 1 4.0213 -2.7568 2.4666 33 1 3.9042 -2.5434 -0.3188 34 1 2.6567 -3.7287 0.1249 35 1 0.9408 -2.4987 -1.0342 36 1 2.3370 -2.5549 -2.1417 37 1 2.3032 1.8060 -1.4221 38 1 2.6740 1.8791 -4.2209 39 1 4.2673 1.6964 -3.4487 40 1 4.0771 4.8536 -1.4847 41 1 3.6030 3.2463 -0.8855 42 1 5.0868 3.4339 -1.8505 43 1 1.2574 3.8717 -3.7078 44 1 1.3667 3.5018 -1.9701 45 1 1.8412 5.1093 -2.5700 46 1 4.9340 3.9528 -4.2891 47 1 3.3411 4.1351 -5.0623 48 1 5.3507 6.8598 -6.5112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358695562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:05 Heat of formation + Delta-G solvation = -59.904962 kcal Electronic energy + Delta-G solvation = -27281.217515 eV Core-core repulsion = 23564.451482 eV Total energy + Delta-G solvation = -3716.766033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29146 -39.66368 -37.46392 -36.52755 -35.63742 -33.65081 -32.11733 -31.51434 -29.70169 -27.44359 -27.10109 -26.51759 -26.19719 -24.09433 -24.04078 -22.67181 -20.70145 -19.23241 -18.29844 -17.89354 -17.55712 -16.58323 -16.36369 -16.20123 -15.61315 -15.41915 -14.74787 -14.47191 -14.37076 -14.14545 -14.00515 -13.50109 -13.23394 -13.16828 -12.95498 -12.78253 -12.73852 -12.41533 -12.35943 -12.16421 -12.05614 -11.84396 -11.71795 -11.16490 -11.00374 -10.87337 -10.63217 -10.57255 -10.40391 -10.26552 -10.02351 -9.88159 -9.21654 -9.20328 -9.03501 -8.93898 -8.60342 -8.35234 -5.99598 -4.00922 2.18513 2.28631 2.67308 3.19282 3.32706 3.38024 3.39474 3.82869 3.94370 4.34131 4.45788 4.54239 4.66217 4.71925 4.88287 4.99888 5.10183 5.27397 5.32350 5.34955 5.35864 5.44366 5.47929 5.50357 5.62496 5.73705 5.75183 5.83508 6.06685 6.16530 6.22086 6.25041 6.39336 6.55304 6.62884 6.72136 6.80098 6.97457 7.05906 7.07085 7.12445 7.63875 7.70100 7.76217 7.93916 7.99171 8.40539 8.59850 9.03595 9.62198 11.11832 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.002998 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.717892 B = 9337.907230 C = 9788.617037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.117 0.883 4 C 0.517 3.483 5 O -0.542 6.542 6 N -0.603 5.603 7 C 0.067 3.933 8 C 0.098 3.902 9 C 0.115 3.885 10 N -0.636 5.636 11 C 0.710 3.290 12 O -0.584 6.584 13 N -0.735 5.735 14 C 0.145 3.855 15 C -0.073 4.073 16 C -0.127 4.127 17 C -0.126 4.126 18 C 0.037 3.963 19 C -0.512 4.512 20 H 0.059 0.941 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.393 0.607 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.026 0.974 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.027 0.973 45 H 0.067 0.933 46 H 0.018 0.982 47 H 0.019 0.981 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 -19.022 14.036 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.134 0.866 4 C 0.304 3.696 5 O -0.419 6.419 6 N -0.336 5.336 7 C -0.075 4.075 8 C -0.026 4.026 9 C -0.009 4.009 10 N -0.377 5.377 11 C 0.412 3.588 12 O -0.462 6.462 13 N -0.391 5.391 14 C 0.022 3.978 15 C -0.074 4.074 16 C -0.184 4.184 17 C -0.183 4.183 18 C 0.000 4.000 19 C -0.550 4.550 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.230 0.770 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.389 -19.070 13.625 24.574 hybrid contribution 0.003 1.178 0.466 1.267 sum -7.386 -17.892 14.091 23.942 Atomic orbital electron populations 1.22075 0.91869 1.03377 1.04083 1.21326 0.96639 0.97524 0.82313 0.86571 1.20172 0.77303 0.81314 0.90817 1.90735 1.56761 1.64695 1.29692 1.47101 1.60949 1.17458 1.08114 1.21831 1.00479 0.98418 0.86784 1.21959 1.00693 0.96267 0.83678 1.21886 0.99959 0.79088 0.99917 1.47500 1.67861 1.06414 1.15883 1.15804 0.78210 0.82261 0.82536 1.90921 1.57017 1.68353 1.29910 1.45554 1.65018 1.04745 1.23790 1.21553 0.97194 0.91478 0.87569 1.20932 0.96241 0.91410 0.98775 1.21760 0.99123 1.02210 0.95291 1.21753 0.95326 1.01767 0.99501 1.19075 0.95487 0.94229 0.91210 1.21147 1.38802 0.91592 1.03479 0.92300 1.25007 0.95601 0.98680 0.95159 1.69956 1.40138 1.34647 1.08669 0.86710 0.78213 0.85594 0.77781 1.20325 1.21408 1.20317 0.91756 0.90126 0.90456 0.88926 0.91987 0.92012 0.90877 0.89271 0.90559 0.86566 0.76986 0.91691 0.91930 0.91345 0.95510 0.93321 0.93270 0.95427 0.91380 0.96318 0.96269 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.38 37.16 0.35 -0.95 16 2 C 0.13 1.32 3.02 -68.91 -0.21 1.12 16 3 H 0.12 1.23 5.88 -51.93 -0.31 0.92 16 4 C 0.52 5.82 6.84 -11.73 -0.08 5.74 16 5 O -0.54 -7.68 15.97 5.56 0.09 -7.59 16 6 N -0.60 -5.39 3.20 -182.48 -0.58 -5.98 16 7 C 0.07 0.48 10.43 59.85 0.62 1.11 16 8 C 0.10 0.67 6.60 -4.26 -0.03 0.65 16 9 C 0.12 0.95 6.43 -3.38 -0.02 0.93 16 10 N -0.64 -7.06 2.62 -171.95 -0.45 -7.51 16 11 C 0.71 10.54 8.32 -86.93 -0.72 9.82 16 12 O -0.58 -10.69 15.84 5.28 0.08 -10.61 16 13 N -0.73 -10.79 4.87 -65.23 -0.32 -11.11 16 14 C 0.15 2.55 4.57 -4.04 -0.02 2.53 16 15 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 16 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 17 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 18 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 19 C -0.51 -13.52 7.65 -34.44 -0.26 -13.79 16 20 H 0.06 1.49 5.68 -52.48 -0.30 1.20 16 21 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 22 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 23 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H 0.06 0.48 7.49 -51.93 -0.39 0.09 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.83 6.59 -51.93 -0.34 0.48 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 35 H 0.08 0.50 7.49 -51.93 -0.39 0.11 16 36 H 0.12 1.06 7.07 -51.93 -0.37 0.69 16 37 H 0.39 5.11 3.78 -40.82 -0.15 4.96 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 41 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 45 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -33.08 372.88 -7.76 -40.84 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.85 Total: 1.65 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -0.07 Total: 4.13 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.62 Total: -50.20 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.17 Total: -18.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.08 -7.76 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358695562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.066 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds