Wall clock time and date at job start Tue Mar 31 2020 11:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.56504 * 2 1 4 4 C 1.50435 * 109.56441 * 120.35352 * 2 1 3 5 5 O 1.21276 * 118.49190 * 287.13882 * 4 2 1 6 6 N 1.33381 * 123.02042 * 107.11667 * 4 2 1 7 7 C 1.46502 * 117.70737 * 184.33628 * 6 4 2 8 8 C 1.45652 * 124.59159 * 4.31727 * 6 4 2 9 9 C 1.53469 * 110.73645 * 337.98329 * 8 6 4 10 10 N 1.47048 * 109.56702 * 239.76483 * 2 1 3 11 11 C 1.34771 * 121.35363 * 102.89288 * 10 2 1 12 12 O 1.21593 * 119.99641 * 184.92340 * 11 10 2 13 13 N 1.34771 * 120.00368 * 4.92668 * 11 10 2 14 14 C 1.46494 * 120.00404 * 174.91101 * 13 11 10 15 15 C 1.53007 * 109.47461 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46952 * 59.99738 * 15 14 13 17 17 C 1.52995 * 109.46729 * 300.00015 * 15 14 13 18 18 C 1.52995 * 109.46992 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.46875 * 180.02562 * 18 15 14 20 20 H 1.08007 * 119.99955 * 359.97438 * 19 18 15 21 21 C 1.37876 * 120.00303 * 180.02562 * 19 18 15 22 22 N 1.31525 * 119.99735 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00337 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47225 * 59.99617 * 23 21 19 25 25 H 1.48505 * 109.47266 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47088 * 299.99784 * 23 21 19 27 27 H 1.09001 * 109.46621 * 180.23459 * 1 2 3 28 28 H 1.08995 * 109.47183 * 300.23570 * 1 2 3 29 29 H 1.09001 * 109.46736 * 60.23852 * 1 2 3 30 30 H 1.08998 * 109.46905 * 0.02562 * 7 6 4 31 31 H 1.08999 * 109.46758 * 119.99811 * 7 6 4 32 32 H 1.08998 * 109.47695 * 240.00180 * 7 6 4 33 33 H 1.09003 * 109.21853 * 98.42733 * 8 6 4 34 34 H 1.08998 * 109.21979 * 217.80750 * 8 6 4 35 35 H 1.09002 * 109.84366 * 287.31035 * 9 8 6 36 36 H 1.08999 * 109.84224 * 166.50628 * 9 8 6 37 37 H 0.97001 * 119.99842 * 354.90513 * 13 11 10 38 38 H 1.08995 * 109.47460 * 59.99585 * 14 13 11 39 39 H 1.09006 * 109.47070 * 299.99512 * 14 13 11 40 40 H 1.08997 * 109.46825 * 180.02562 * 16 15 14 41 41 H 1.09001 * 109.47183 * 300.00080 * 16 15 14 42 42 H 1.08995 * 109.47233 * 60.00053 * 16 15 14 43 43 H 1.09003 * 109.47217 * 299.99489 * 17 15 14 44 44 H 1.09001 * 109.47449 * 59.99893 * 17 15 14 45 45 H 1.08997 * 109.46842 * 180.02562 * 17 15 14 46 46 H 1.09006 * 109.47537 * 299.99657 * 18 15 14 47 47 H 1.08995 * 109.47462 * 60.00017 * 18 15 14 48 48 H 0.96994 * 119.99762 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0339 -0.7163 1.2232 5 8 1.9316 -0.1660 2.2991 6 7 2.5874 -1.9290 1.1790 7 6 2.9495 -2.5593 2.4509 8 6 2.8568 -2.6709 -0.0452 9 6 1.9679 -2.1693 -1.1913 10 7 2.0226 -0.6977 -1.1971 11 6 2.4994 -0.0178 -2.2586 12 8 2.8168 -0.6140 -3.2697 13 7 2.6245 1.3227 -2.1994 14 6 3.2457 2.0502 -3.3089 15 6 3.2629 3.5469 -2.9915 16 6 4.0652 3.7875 -1.7110 17 6 1.8290 4.0431 -2.7956 18 6 3.9123 4.3064 -4.1500 19 6 3.9298 5.7805 -3.8370 20 1 3.5184 6.1397 -2.9052 21 6 4.4699 6.6708 -4.7407 22 7 4.9704 6.2335 -5.8757 23 14 4.4909 8.4980 -4.3532 24 1 5.2695 8.7315 -3.1104 25 1 5.1213 9.2353 -5.4776 26 1 3.0991 8.9797 -4.1632 27 1 -0.3632 -1.0277 0.0042 28 1 -0.3633 0.5175 0.8878 29 1 -0.3633 0.5101 -0.8921 30 1 2.6905 -1.8927 3.2734 31 1 2.4055 -3.4977 2.5592 32 1 4.0213 -2.7568 2.4666 33 1 3.9042 -2.5434 -0.3188 34 1 2.6567 -3.7287 0.1249 35 1 0.9408 -2.4987 -1.0342 36 1 2.3370 -2.5549 -2.1417 37 1 2.3032 1.8060 -1.4221 38 1 2.6740 1.8791 -4.2209 39 1 4.2673 1.6964 -3.4487 40 1 4.0771 4.8536 -1.4847 41 1 3.6030 3.2463 -0.8855 42 1 5.0868 3.4339 -1.8505 43 1 1.2574 3.8717 -3.7078 44 1 1.3667 3.5018 -1.9701 45 1 1.8412 5.1093 -2.5700 46 1 4.9340 3.9528 -4.2891 47 1 3.3411 4.1351 -5.0623 48 1 5.3507 6.8598 -6.5112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358695562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:04 Heat of formation + Delta-G solvation = -81.491477 kcal Electronic energy + Delta-G solvation = -27282.153576 eV Core-core repulsion = 23564.451482 eV Total energy + Delta-G solvation = -3717.702094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18477 -40.76021 -38.87635 -37.53288 -36.49153 -35.23223 -33.91181 -32.30977 -30.56146 -29.02163 -28.09834 -27.97868 -27.54575 -25.29560 -24.75965 -24.24281 -21.79195 -20.45015 -19.42656 -18.84532 -18.56691 -18.30232 -17.36312 -17.09106 -16.81311 -16.54587 -16.37773 -15.63893 -15.46026 -15.32981 -15.06799 -14.70104 -14.51889 -14.34563 -13.94110 -13.91621 -13.79161 -13.62788 -13.39796 -13.09023 -13.00371 -12.84344 -12.75172 -12.61768 -12.54643 -12.41059 -12.33228 -12.21431 -11.99552 -11.65814 -11.54115 -11.14011 -10.96501 -10.85206 -10.49110 -10.26181 -9.87387 -9.63112 -8.12703 -6.20219 1.34275 1.37594 1.43648 1.45214 1.52434 1.88700 2.06199 2.44954 2.73866 3.20792 3.21775 3.66618 3.79317 3.94205 3.97982 4.08810 4.13252 4.21436 4.34062 4.44827 4.60057 4.61791 4.65986 4.68314 4.70891 4.72700 4.79253 4.86053 4.94713 4.95480 5.09206 5.10570 5.11789 5.15307 5.36341 5.37055 5.47478 5.50171 5.53371 5.58327 5.72027 5.80662 5.91142 6.23944 6.32194 6.77617 6.93839 6.95034 7.43542 7.47406 8.99585 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.002998 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.717892 B = 9337.907230 C = 9788.617037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.129 3.871 3 H 0.113 0.887 4 C 0.512 3.488 5 O -0.578 6.578 6 N -0.601 5.601 7 C 0.065 3.935 8 C 0.100 3.900 9 C 0.109 3.891 10 N -0.627 5.627 11 C 0.710 3.290 12 O -0.622 6.622 13 N -0.727 5.727 14 C 0.161 3.839 15 C -0.065 4.065 16 C -0.121 4.121 17 C -0.121 4.121 18 C 0.042 3.958 19 C -0.515 4.515 20 H 0.071 0.929 21 C -0.003 4.003 22 N -0.938 5.938 23 Si 0.956 3.044 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.267 1.267 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.404 0.596 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.055 0.945 46 H -0.013 1.013 47 H -0.011 1.011 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.014 -20.004 16.291 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 H 0.130 0.870 4 C 0.300 3.700 5 O -0.458 6.458 6 N -0.332 5.332 7 C -0.077 4.077 8 C -0.022 4.022 9 C -0.013 4.013 10 N -0.367 5.367 11 C 0.411 3.589 12 O -0.503 6.503 13 N -0.385 5.385 14 C 0.036 3.964 15 C -0.066 4.066 16 C -0.178 4.178 17 C -0.178 4.178 18 C 0.005 3.995 19 C -0.553 4.553 20 H 0.089 0.911 21 C -0.200 4.200 22 N -0.579 5.579 23 Si 0.782 3.218 24 H -0.193 1.193 25 H -0.217 1.217 26 H -0.192 1.192 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.243 0.757 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.006 0.994 47 H 0.007 0.993 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.716 -20.095 15.933 27.086 hybrid contribution 0.423 1.357 -0.219 1.439 sum -8.294 -18.737 15.714 25.822 Atomic orbital electron populations 1.22041 0.90152 1.04281 1.04288 1.21419 0.97912 0.97121 0.81391 0.86951 1.20286 0.77424 0.81905 0.90429 1.90726 1.58537 1.65727 1.30772 1.47246 1.59667 1.16897 1.09439 1.21956 1.01629 0.98858 0.85231 1.22076 0.99933 0.97970 0.82267 1.22157 1.01781 0.77141 1.00244 1.47495 1.66660 1.07580 1.14937 1.15878 0.78065 0.82007 0.82900 1.90901 1.58669 1.69022 1.31701 1.45257 1.64987 1.04978 1.23243 1.21110 0.96331 0.90867 0.88074 1.20726 0.97130 0.91539 0.97165 1.21683 0.98711 1.01883 0.95526 1.21679 0.94072 1.01412 1.00614 1.18941 0.93736 0.94507 0.92352 1.21566 1.37624 0.92508 1.03582 0.91055 1.25916 0.95513 1.03549 0.95054 1.70112 1.41657 1.36178 1.09934 0.85627 0.78682 0.79889 0.77610 1.19292 1.21681 1.19153 0.90584 0.89798 0.90276 0.90966 0.89206 0.90886 0.91521 0.85377 0.88112 0.87391 0.75740 0.93216 0.93554 0.92474 0.92063 0.94309 0.94063 0.91661 0.92551 0.99444 0.99262 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.38 71.99 0.67 -1.42 16 2 C 0.13 2.35 3.02 44.06 0.13 2.48 16 3 H 0.11 2.13 5.88 -2.39 -0.01 2.11 16 4 C 0.51 10.54 6.84 87.79 0.60 11.14 16 5 O -0.58 -15.68 15.97 -3.02 -0.05 -15.73 16 6 N -0.60 -9.16 3.20 -850.41 -2.72 -11.88 16 7 C 0.07 0.76 10.43 127.77 1.33 2.09 16 8 C 0.10 1.07 6.60 86.70 0.57 1.64 16 9 C 0.11 1.53 6.43 86.39 0.56 2.09 16 10 N -0.63 -12.74 2.62 -816.18 -2.14 -14.88 16 11 C 0.71 20.39 8.32 179.06 1.49 21.88 16 12 O -0.62 -22.73 15.84 -4.01 -0.06 -22.80 16 13 N -0.73 -20.58 4.87 -478.54 -2.33 -22.91 16 14 C 0.16 5.72 4.57 86.38 0.39 6.12 16 15 C -0.07 -2.46 0.54 -52.18 -0.03 -2.49 16 16 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 17 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 18 C 0.04 2.14 4.04 29.85 0.12 2.26 16 19 C -0.51 -27.54 7.65 25.60 0.20 -27.34 16 20 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 21 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 22 N -0.94 -56.90 13.29 21.45 0.28 -56.62 16 23 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H 0.08 0.89 7.49 -2.39 -0.02 0.88 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.19 6.59 -2.39 -0.02 1.18 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.13 0.45 8.07 -2.39 -0.02 0.43 16 35 H 0.10 0.96 7.49 -2.39 -0.02 0.94 16 36 H 0.11 1.78 7.07 -2.39 -0.02 1.76 16 37 H 0.40 9.61 3.78 -92.71 -0.35 9.26 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.06 2.10 6.62 -2.39 -0.02 2.08 16 41 H 0.06 1.67 6.86 -2.39 -0.02 1.66 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 45 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 46 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 47 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -74.14 372.88 3.28 -70.86 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.60 Total: 16.63 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 7.66 Total: 11.67 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -6.90 Total: -106.29 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.11 Total: -38.53 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -74.14 3.28 -70.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358695562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.630 kcal (2) G-P(sol) polarization free energy of solvation -74.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds