Wall clock time and date at job start Tue Mar 31 2020 10:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46529 * 2 1 4 4 C 1.53911 * 109.42950 * 120.09853 * 2 1 3 5 5 C 1.51191 * 108.31866 * 200.17574 * 4 2 1 6 6 O 1.21278 * 119.77228 * 108.77438 * 5 4 2 7 7 N 1.33638 * 120.45846 * 288.50056 * 5 4 2 8 8 C 1.46917 * 120.62467 * 359.97438 * 7 5 4 9 9 C 1.53215 * 108.82291 * 71.96473 * 8 7 5 10 10 N 1.46065 * 109.72782 * 278.40507 * 9 8 7 11 11 C 1.34773 * 118.73927 * 243.84149 * 10 9 8 12 12 O 1.21586 * 120.00650 * 173.94459 * 11 10 9 13 13 N 1.34779 * 119.99442 * 353.94084 * 11 10 9 14 14 C 1.46506 * 119.99916 * 185.07836 * 13 11 10 15 15 C 1.53002 * 109.47123 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47287 * 300.00042 * 15 14 13 17 17 C 1.53003 * 109.46900 * 60.00140 * 15 14 13 18 18 C 1.52998 * 109.47232 * 179.97438 * 15 14 13 19 19 C 1.50699 * 109.47127 * 180.02562 * 18 15 14 20 20 H 1.07994 * 120.00103 * 0.02562 * 19 18 15 21 21 C 1.37879 * 119.99982 * 179.97438 * 19 18 15 22 22 N 1.31514 * 119.99728 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00053 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47034 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46582 * 120.00466 * 23 21 19 26 26 H 1.48493 * 109.47228 * 240.00497 * 23 21 19 27 27 H 1.09003 * 109.46831 * 185.31098 * 1 2 3 28 28 H 1.09006 * 109.47049 * 305.29967 * 1 2 3 29 29 H 1.08994 * 109.47718 * 65.30352 * 1 2 3 30 30 H 1.08998 * 109.74524 * 80.53966 * 4 2 1 31 31 H 1.09003 * 109.78100 * 319.82933 * 4 2 1 32 32 H 0.96998 * 119.68852 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.57751 * 191.77144 * 8 7 5 34 34 H 1.08999 * 109.57867 * 312.16374 * 8 7 5 35 35 H 1.09000 * 109.42972 * 38.48551 * 9 8 7 36 36 H 1.09012 * 109.43015 * 158.37767 * 9 8 7 37 37 H 0.97003 * 120.00057 * 5.07830 * 13 11 10 38 38 H 1.09001 * 109.46982 * 299.99845 * 14 13 11 39 39 H 1.09002 * 109.46710 * 60.00432 * 14 13 11 40 40 H 1.09005 * 109.47089 * 60.00270 * 16 15 14 41 41 H 1.09000 * 109.46852 * 179.97438 * 16 15 14 42 42 H 1.08993 * 109.47505 * 300.00169 * 16 15 14 43 43 H 1.09001 * 109.47342 * 59.99824 * 17 15 14 44 44 H 1.09001 * 109.47125 * 180.02562 * 17 15 14 45 45 H 1.09005 * 109.47390 * 299.99677 * 17 15 14 46 46 H 1.09001 * 109.46979 * 300.00157 * 18 15 14 47 47 H 1.08998 * 109.46806 * 59.99940 * 18 15 14 48 48 H 0.97004 * 119.99678 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0419 -0.7279 1.2557 5 6 3.4705 -0.2996 1.5040 6 8 3.7281 0.4225 2.4437 7 7 4.4522 -0.7156 0.6983 8 6 4.1623 -1.5959 -0.4417 9 6 3.4372 -0.7850 -1.5206 10 7 2.0169 -0.6886 -1.1938 11 6 1.1207 -1.2562 -2.0251 12 8 -0.0562 -1.2865 -1.7214 13 7 1.5292 -1.7902 -3.1932 14 6 0.5441 -2.3070 -4.1466 15 6 1.2659 -2.8525 -5.3804 16 6 2.0717 -1.7302 -6.0377 17 6 2.2106 -3.9807 -4.9613 18 6 0.2372 -3.3928 -6.3758 19 6 0.9482 -3.9307 -7.5908 20 1 2.0259 -3.8915 -7.6472 21 6 0.2228 -4.4738 -8.6300 22 7 -1.0897 -4.5219 -8.5610 23 14 1.1040 -5.1398 -10.1363 24 1 2.5695 -4.9683 -9.9686 25 1 0.7899 -6.5825 -10.2959 26 1 0.6533 -4.3987 -11.3416 27 1 -0.3633 -1.0233 0.0951 28 1 -0.3633 0.5939 0.8388 29 1 -0.3634 0.4293 -0.9336 30 1 2.0054 -1.8057 1.0972 31 1 1.4255 -0.4607 2.1141 32 1 5.3648 -0.4343 0.8681 33 1 5.0951 -1.9896 -0.8456 34 1 3.5272 -2.4193 -0.1150 35 1 3.8663 0.2157 -1.5717 36 1 3.5538 -1.2792 -2.4853 37 1 2.4754 -1.8324 -3.4027 38 1 -0.0303 -3.1063 -3.6782 39 1 -0.1286 -1.5031 -4.4455 40 1 2.8047 -1.3458 -5.3284 41 1 2.5862 -2.1191 -6.9164 42 1 1.3987 -0.9265 -6.3362 43 1 1.6365 -4.7803 -4.4931 44 1 2.7252 -4.3691 -5.8402 45 1 2.9436 -3.5963 -4.2520 46 1 -0.3365 -4.1925 -5.9073 47 1 -0.4362 -2.5894 -6.6744 48 1 -1.6001 -4.9036 -9.2923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377046225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:41 Heat of formation + Delta-G solvation = -46.777626 kcal Electronic energy + Delta-G solvation = -27288.577814 eV Core-core repulsion = 23572.381025 eV Total energy + Delta-G solvation = -3716.196789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.21984 -39.71072 -37.61403 -36.64081 -34.97880 -34.23388 -32.67619 -31.69217 -28.86029 -28.12841 -27.11341 -26.57736 -26.12921 -23.86142 -23.31102 -22.20436 -20.36035 -19.96526 -18.61689 -17.80718 -17.44443 -17.02608 -16.53057 -16.13199 -15.86834 -15.08177 -14.92929 -14.46059 -14.26124 -14.10442 -13.85537 -13.44363 -13.31080 -13.12729 -12.91749 -12.86251 -12.54751 -12.39982 -12.23273 -12.10375 -12.04537 -11.72969 -11.42615 -11.18581 -11.07028 -10.87390 -10.69603 -10.44434 -10.28162 -10.13977 -9.92987 -9.71345 -9.30944 -9.04643 -8.95716 -8.88249 -8.57879 -8.39731 -6.03591 -4.05007 2.27608 2.51680 2.88533 3.21255 3.27169 3.35574 3.37235 3.79835 4.16669 4.41844 4.45628 4.49385 4.61245 4.68267 4.84532 4.93830 5.08589 5.29585 5.32097 5.37350 5.45035 5.55579 5.58621 5.67561 5.72673 6.09120 6.10527 6.10803 6.19742 6.26131 6.35290 6.38684 6.50593 6.56899 6.62297 6.77001 6.82111 6.84336 7.01166 7.02090 7.08794 7.60563 7.72416 7.86292 7.94731 7.98748 8.36495 8.66727 9.00084 9.58405 11.07853 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.029794 B = 0.002830 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.550224 B = 9891.950044 C =10518.425072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.172 3.828 3 H 0.073 0.927 4 C -0.154 4.154 5 C 0.518 3.482 6 O -0.550 6.550 7 N -0.725 5.725 8 C 0.090 3.910 9 C 0.090 3.910 10 N -0.632 5.632 11 C 0.696 3.304 12 O -0.576 6.576 13 N -0.738 5.738 14 C 0.145 3.855 15 C -0.073 4.073 16 C -0.126 4.126 17 C -0.125 4.125 18 C 0.036 3.964 19 C -0.511 4.511 20 H 0.060 0.940 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.401 0.599 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.391 0.609 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.019 0.981 47 H 0.018 0.982 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.249 6.742 15.845 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.068 3.932 3 H 0.091 0.909 4 C -0.196 4.196 5 C 0.305 3.695 6 O -0.428 6.428 7 N -0.378 5.378 8 C -0.036 4.036 9 C -0.035 4.035 10 N -0.370 5.370 11 C 0.398 3.602 12 O -0.454 6.454 13 N -0.396 5.396 14 C 0.022 3.978 15 C -0.073 4.073 16 C -0.183 4.183 17 C -0.182 4.182 18 C -0.001 4.001 19 C -0.549 4.549 20 H 0.078 0.922 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.237 0.763 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.229 0.771 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.141 6.994 16.402 20.513 hybrid contribution 1.385 -0.425 -1.105 1.822 sum 11.526 6.568 15.297 20.248 Atomic orbital electron populations 1.22296 0.90943 1.04173 1.01373 1.20916 0.96926 0.94140 0.81220 0.90889 1.22693 0.92753 1.03037 1.01081 1.20690 0.88183 0.79394 0.81195 1.90758 1.84424 1.37326 1.30271 1.45935 1.10807 1.51156 1.29928 1.22245 1.01912 0.92926 0.86528 1.22020 0.81445 1.01645 0.98417 1.47093 1.05312 1.59336 1.25288 1.16149 0.85002 0.78579 0.80440 1.91012 1.16161 1.63444 1.74783 1.45805 1.10822 1.64854 1.18146 1.21505 0.90124 0.98089 0.88097 1.20916 0.97481 0.94992 0.93917 1.21750 0.98771 0.97765 1.00002 1.21749 0.98135 0.98016 1.00350 1.19087 0.92752 0.96018 0.92276 1.21209 0.93098 1.38939 1.01692 0.92229 1.25015 0.94785 0.96222 0.98479 1.69975 1.05171 1.45705 1.32452 0.86602 0.79814 0.78683 0.83270 1.19820 1.21134 1.21132 0.89665 0.94374 0.90590 0.88634 0.87239 0.76299 0.88076 0.89743 0.90298 0.88697 0.77103 0.91844 0.92054 0.95528 0.91450 0.93336 0.93302 0.91460 0.95532 0.96294 0.96321 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 7.45 37.15 0.28 -1.23 16 2 C 0.17 1.71 3.22 -67.64 -0.22 1.49 16 3 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 4 C -0.15 -1.38 5.03 -27.17 -0.14 -1.52 16 5 C 0.52 5.18 7.10 -11.25 -0.08 5.10 16 6 O -0.55 -7.72 17.91 5.56 0.10 -7.62 16 7 N -0.73 -4.93 5.30 -60.00 -0.32 -5.24 16 8 C 0.09 0.46 6.49 -3.70 -0.02 0.43 16 9 C 0.09 0.59 6.18 -4.17 -0.03 0.57 16 10 N -0.63 -6.26 2.77 -171.71 -0.48 -6.74 16 11 C 0.70 9.32 8.04 -86.92 -0.70 8.62 16 12 O -0.58 -9.58 11.41 5.29 0.06 -9.52 16 13 N -0.74 -9.53 4.85 -65.22 -0.32 -9.84 16 14 C 0.15 2.38 4.57 -4.04 -0.02 2.36 16 15 C -0.07 -1.28 0.54 -154.51 -0.08 -1.36 16 16 C -0.13 -2.04 8.05 37.16 0.30 -1.74 16 17 C -0.13 -2.01 8.05 37.16 0.30 -1.71 16 18 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 19 C -0.51 -13.10 7.65 -34.44 -0.26 -13.36 16 20 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 21 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 22 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 23 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.08 1.13 6.54 -51.93 -0.34 0.79 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 1.04 6.67 -51.93 -0.35 0.70 16 30 H 0.10 0.81 7.07 -51.93 -0.37 0.44 16 31 H 0.11 0.95 8.00 -51.93 -0.42 0.54 16 32 H 0.40 2.25 8.91 -40.82 -0.36 1.89 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.50 7.02 -51.93 -0.36 0.14 16 35 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.10 0.55 5.28 -51.92 -0.27 0.28 16 37 H 0.39 4.13 3.43 -40.82 -0.14 3.99 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.03 0.34 6.86 -51.93 -0.36 -0.02 16 41 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.18 6.62 -51.93 -0.34 0.84 16 45 H 0.03 0.33 6.86 -51.93 -0.36 -0.03 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -32.32 363.30 -8.30 -40.62 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.66 Total: 2.50 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.88 Total: -0.19 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.37 Total: -46.94 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.16 Total: -17.13 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.32 -8.30 -40.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377046225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.153 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds