Wall clock time and date at job start Tue Mar 31 2020 10:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46529 * 2 1 4 4 C 1.53911 * 109.42950 * 120.09853 * 2 1 3 5 5 C 1.51191 * 108.31866 * 200.17574 * 4 2 1 6 6 O 1.21278 * 119.77228 * 108.77438 * 5 4 2 7 7 N 1.33638 * 120.45846 * 288.50056 * 5 4 2 8 8 C 1.46917 * 120.62467 * 359.97438 * 7 5 4 9 9 C 1.53215 * 108.82291 * 71.96473 * 8 7 5 10 10 N 1.46065 * 109.72782 * 278.40507 * 9 8 7 11 11 C 1.34773 * 118.73927 * 243.84149 * 10 9 8 12 12 O 1.21586 * 120.00650 * 173.94459 * 11 10 9 13 13 N 1.34779 * 119.99442 * 353.94084 * 11 10 9 14 14 C 1.46506 * 119.99916 * 185.07836 * 13 11 10 15 15 C 1.53002 * 109.47123 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47287 * 300.00042 * 15 14 13 17 17 C 1.53003 * 109.46900 * 60.00140 * 15 14 13 18 18 C 1.52998 * 109.47232 * 179.97438 * 15 14 13 19 19 C 1.50699 * 109.47127 * 180.02562 * 18 15 14 20 20 H 1.07994 * 120.00103 * 0.02562 * 19 18 15 21 21 C 1.37879 * 119.99982 * 179.97438 * 19 18 15 22 22 N 1.31514 * 119.99728 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00053 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47034 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46582 * 120.00466 * 23 21 19 26 26 H 1.48493 * 109.47228 * 240.00497 * 23 21 19 27 27 H 1.09003 * 109.46831 * 185.31098 * 1 2 3 28 28 H 1.09006 * 109.47049 * 305.29967 * 1 2 3 29 29 H 1.08994 * 109.47718 * 65.30352 * 1 2 3 30 30 H 1.08998 * 109.74524 * 80.53966 * 4 2 1 31 31 H 1.09003 * 109.78100 * 319.82933 * 4 2 1 32 32 H 0.96998 * 119.68852 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.57751 * 191.77144 * 8 7 5 34 34 H 1.08999 * 109.57867 * 312.16374 * 8 7 5 35 35 H 1.09000 * 109.42972 * 38.48551 * 9 8 7 36 36 H 1.09012 * 109.43015 * 158.37767 * 9 8 7 37 37 H 0.97003 * 120.00057 * 5.07830 * 13 11 10 38 38 H 1.09001 * 109.46982 * 299.99845 * 14 13 11 39 39 H 1.09002 * 109.46710 * 60.00432 * 14 13 11 40 40 H 1.09005 * 109.47089 * 60.00270 * 16 15 14 41 41 H 1.09000 * 109.46852 * 179.97438 * 16 15 14 42 42 H 1.08993 * 109.47505 * 300.00169 * 16 15 14 43 43 H 1.09001 * 109.47342 * 59.99824 * 17 15 14 44 44 H 1.09001 * 109.47125 * 180.02562 * 17 15 14 45 45 H 1.09005 * 109.47390 * 299.99677 * 17 15 14 46 46 H 1.09001 * 109.46979 * 300.00157 * 18 15 14 47 47 H 1.08998 * 109.46806 * 59.99940 * 18 15 14 48 48 H 0.97004 * 119.99678 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0419 -0.7279 1.2557 5 6 3.4705 -0.2996 1.5040 6 8 3.7281 0.4225 2.4437 7 7 4.4522 -0.7156 0.6983 8 6 4.1623 -1.5959 -0.4417 9 6 3.4372 -0.7850 -1.5206 10 7 2.0169 -0.6886 -1.1938 11 6 1.1207 -1.2562 -2.0251 12 8 -0.0562 -1.2865 -1.7214 13 7 1.5292 -1.7902 -3.1932 14 6 0.5441 -2.3070 -4.1466 15 6 1.2659 -2.8525 -5.3804 16 6 2.0717 -1.7302 -6.0377 17 6 2.2106 -3.9807 -4.9613 18 6 0.2372 -3.3928 -6.3758 19 6 0.9482 -3.9307 -7.5908 20 1 2.0259 -3.8915 -7.6472 21 6 0.2228 -4.4738 -8.6300 22 7 -1.0897 -4.5219 -8.5610 23 14 1.1040 -5.1398 -10.1363 24 1 2.5695 -4.9683 -9.9686 25 1 0.7899 -6.5825 -10.2959 26 1 0.6533 -4.3987 -11.3416 27 1 -0.3633 -1.0233 0.0951 28 1 -0.3633 0.5939 0.8388 29 1 -0.3634 0.4293 -0.9336 30 1 2.0054 -1.8057 1.0972 31 1 1.4255 -0.4607 2.1141 32 1 5.3648 -0.4343 0.8681 33 1 5.0951 -1.9896 -0.8456 34 1 3.5272 -2.4193 -0.1150 35 1 3.8663 0.2157 -1.5717 36 1 3.5538 -1.2792 -2.4853 37 1 2.4754 -1.8324 -3.4027 38 1 -0.0303 -3.1063 -3.6782 39 1 -0.1286 -1.5031 -4.4455 40 1 2.8047 -1.3458 -5.3284 41 1 2.5862 -2.1191 -6.9164 42 1 1.3987 -0.9265 -6.3362 43 1 1.6365 -4.7803 -4.4931 44 1 2.7252 -4.3691 -5.8402 45 1 2.9436 -3.5963 -4.2520 46 1 -0.3365 -4.1925 -5.9073 47 1 -0.4362 -2.5894 -6.6744 48 1 -1.6001 -4.9036 -9.2923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377046225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:40 Heat of formation + Delta-G solvation = -69.468264 kcal Electronic energy + Delta-G solvation = -27289.561753 eV Core-core repulsion = 23572.381025 eV Total energy + Delta-G solvation = -3717.180729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.10573 -40.61775 -38.95480 -37.54115 -35.93092 -35.32650 -34.34793 -32.87717 -29.57390 -29.11825 -28.80843 -27.90383 -27.43696 -24.97886 -24.47626 -23.35557 -21.11755 -20.95755 -19.82312 -18.85750 -18.33451 -18.21803 -17.76395 -17.27051 -16.74454 -16.52760 -15.99743 -15.86451 -15.36507 -15.15093 -14.96304 -14.61055 -14.33802 -14.19498 -14.04068 -13.90513 -13.83926 -13.49470 -13.39206 -13.20554 -12.88310 -12.78503 -12.66064 -12.53230 -12.45973 -12.29807 -12.22402 -12.17560 -11.89675 -11.48038 -10.97569 -10.95994 -10.80735 -10.49424 -10.43042 -10.15210 -9.96119 -9.48948 -8.11460 -6.18766 1.43500 1.44931 1.50643 1.55949 1.60147 2.16767 2.30994 2.46199 2.89239 3.23613 3.45209 3.80222 3.92088 3.96732 4.07076 4.09119 4.15987 4.23120 4.24462 4.28633 4.53698 4.63463 4.72739 4.77372 4.79895 4.84269 4.86140 4.98310 5.02222 5.14486 5.17121 5.18238 5.35547 5.44644 5.54592 5.56031 5.60073 5.63785 5.72248 5.83731 5.86285 5.90821 5.94118 6.18877 6.34287 6.96672 7.01975 7.18477 7.49125 7.63332 9.01264 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.029794 B = 0.002830 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.550224 B = 9891.950044 C =10518.425072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.175 3.825 3 H 0.079 0.921 4 C -0.146 4.146 5 C 0.518 3.482 6 O -0.596 6.596 7 N -0.711 5.711 8 C 0.092 3.908 9 C 0.082 3.918 10 N -0.623 5.623 11 C 0.694 3.306 12 O -0.614 6.614 13 N -0.725 5.725 14 C 0.162 3.838 15 C -0.064 4.064 16 C -0.120 4.120 17 C -0.120 4.120 18 C 0.039 3.961 19 C -0.509 4.509 20 H 0.074 0.926 21 C -0.006 4.006 22 N -0.939 5.939 23 Si 0.956 3.044 24 H -0.255 1.255 25 H -0.286 1.286 26 H -0.287 1.287 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.410 0.590 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.406 0.594 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.036 0.964 44 H 0.054 0.946 45 H 0.072 0.928 46 H -0.014 1.014 47 H -0.016 1.016 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.946 6.803 16.150 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.097 0.903 4 C -0.187 4.187 5 C 0.305 3.695 6 O -0.477 6.477 7 N -0.362 5.362 8 C -0.033 4.033 9 C -0.041 4.041 10 N -0.360 5.360 11 C 0.396 3.604 12 O -0.494 6.494 13 N -0.385 5.385 14 C 0.037 3.963 15 C -0.065 4.065 16 C -0.177 4.177 17 C -0.177 4.177 18 C 0.001 3.999 19 C -0.548 4.548 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.581 5.581 23 Si 0.782 3.218 24 H -0.178 1.178 25 H -0.212 1.212 26 H -0.213 1.213 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.247 0.753 33 H 0.159 0.841 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.247 0.753 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.004 0.996 47 H 0.003 0.997 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.932 7.051 16.698 22.861 hybrid contribution 0.209 -0.420 -1.164 1.255 sum 14.141 6.631 15.534 22.028 Atomic orbital electron populations 1.22100 0.92322 1.02928 1.00593 1.20873 0.95769 0.94605 0.81690 0.90326 1.22585 0.92457 1.03227 1.00412 1.20780 0.88869 0.78876 0.80944 1.90744 1.85077 1.39550 1.32376 1.45895 1.10645 1.50256 1.29437 1.22411 1.03633 0.91965 0.85286 1.22336 0.79164 1.02952 0.99662 1.47104 1.06405 1.58142 1.24385 1.16292 0.84916 0.78563 0.80677 1.91018 1.18150 1.64693 1.75556 1.45421 1.10791 1.64799 1.17479 1.21018 0.90318 0.96779 0.88173 1.20705 0.96466 0.96315 0.92970 1.21682 0.99007 0.96551 1.00505 1.21680 0.98260 0.96941 1.00818 1.18976 0.93505 0.93949 0.93427 1.21638 0.93845 1.37437 1.01840 0.90750 1.25941 0.95412 0.96989 1.01949 1.70131 1.07003 1.47422 1.33542 0.85522 0.79523 0.77566 0.79183 1.17816 1.21237 1.21300 0.91600 0.92834 0.93140 0.87909 0.87186 0.75301 0.84110 0.90075 0.89149 0.87161 0.75311 0.93793 0.94129 0.91067 0.92642 0.94686 0.94493 0.92693 0.90876 0.99603 0.99736 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 7.45 71.98 0.54 -2.27 16 2 C 0.17 3.21 3.22 45.36 0.15 3.35 16 3 H 0.08 1.40 7.95 -2.38 -0.02 1.39 16 4 C -0.15 -2.36 5.03 30.31 0.15 -2.21 16 5 C 0.52 9.30 7.10 87.99 0.62 9.92 16 6 O -0.60 -16.07 17.91 -3.02 -0.05 -16.13 16 7 N -0.71 -7.24 5.30 -462.75 -2.45 -9.69 16 8 C 0.09 0.51 6.49 86.37 0.56 1.07 16 9 C 0.08 0.73 6.18 86.53 0.54 1.27 16 10 N -0.62 -10.86 2.77 -815.44 -2.26 -13.12 16 11 C 0.69 17.63 8.04 179.05 1.44 19.07 16 12 O -0.61 -20.67 11.41 -3.99 -0.05 -20.72 16 13 N -0.72 -17.14 4.85 -478.51 -2.32 -19.46 16 14 C 0.16 5.31 4.57 86.38 0.39 5.70 16 15 C -0.06 -2.22 0.54 -52.18 -0.03 -2.25 16 16 C -0.12 -3.65 8.05 71.98 0.58 -3.07 16 17 C -0.12 -3.56 8.05 71.98 0.58 -2.98 16 18 C 0.04 1.91 4.04 29.85 0.12 2.03 16 19 C -0.51 -26.28 7.65 25.60 0.20 -26.08 16 20 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 21 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 22 N -0.94 -56.21 13.29 21.45 0.28 -55.93 16 23 Si 0.96 42.46 29.54 68.60 2.03 44.48 16 24 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16 25 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 27 H 0.07 1.78 6.54 -2.39 -0.02 1.76 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.05 1.42 6.67 -2.39 -0.02 1.40 16 30 H 0.10 1.53 7.07 -2.39 -0.02 1.51 16 31 H 0.11 1.80 8.00 -2.39 -0.02 1.78 16 32 H 0.41 3.16 8.91 -92.71 -0.83 2.34 16 33 H 0.14 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.08 0.62 7.02 -2.39 -0.02 0.60 16 35 H 0.09 0.70 8.10 -2.39 -0.02 0.68 16 36 H 0.11 0.67 5.28 -2.38 -0.01 0.66 16 37 H 0.41 6.83 3.43 -92.71 -0.32 6.51 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 1.51 6.86 -2.38 -0.02 1.50 16 41 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.05 1.79 6.62 -2.39 -0.02 1.77 16 45 H 0.07 1.48 6.86 -2.38 -0.02 1.47 16 46 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 47 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 48 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -74.80 363.30 1.31 -73.49 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -0.16 Total: 13.40 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 6.30 Total: 3.67 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -6.75 Total: -98.20 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.10 Total: -36.84 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -74.80 1.31 -73.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377046225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.021 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds