Wall clock time and date at job start Tue Mar 31 2020 09:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47120 * 2 1 4 4 N 1.46503 * 109.46789 * 120.00206 * 2 1 3 5 5 C 1.46498 * 120.00104 * 299.99384 * 4 2 1 6 6 C 1.34778 * 119.99670 * 119.99941 * 4 2 1 7 7 O 1.21280 * 120.00319 * 359.97438 * 6 4 2 8 8 C 1.50707 * 119.99803 * 179.97438 * 6 4 2 9 9 C 1.53354 * 109.40373 * 300.12173 * 8 6 4 10 10 C 1.53195 * 109.14570 * 178.68089 * 9 8 6 11 11 N 1.46926 * 108.89465 * 54.57617 * 10 9 8 12 12 C 1.34774 * 120.63121 * 126.33965 * 11 10 9 13 13 O 1.21582 * 120.00014 * 354.77536 * 12 11 10 14 14 N 1.34782 * 119.99915 * 174.77166 * 12 11 10 15 15 C 1.46498 * 119.99675 * 184.98301 * 14 12 11 16 16 C 1.50704 * 109.47096 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99499 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00354 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46977 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46636 * 119.99923 * 20 18 16 23 23 H 1.48495 * 109.47132 * 239.99674 * 20 18 16 24 24 C 1.46926 * 118.73722 * 306.32250 * 11 10 9 25 25 C 1.53040 * 109.45905 * 180.02562 * 8 6 4 26 26 H 1.08996 * 109.46560 * 300.00023 * 1 2 3 27 27 H 1.09001 * 109.47002 * 59.99911 * 1 2 3 28 28 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47110 * 239.99757 * 2 1 3 30 30 H 1.09001 * 109.47256 * 299.99933 * 3 2 1 31 31 H 1.09002 * 109.47042 * 60.00338 * 3 2 1 32 32 H 1.09004 * 109.46640 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47213 * 270.00549 * 5 4 2 34 34 H 1.08998 * 109.47066 * 30.00767 * 5 4 2 35 35 H 1.09002 * 109.47014 * 150.00156 * 5 4 2 36 36 H 1.08994 * 109.45748 * 60.02660 * 8 6 4 37 37 H 1.08997 * 109.68505 * 58.71937 * 9 8 6 38 38 H 1.09002 * 109.47645 * 298.51565 * 9 8 6 39 39 H 1.08999 * 109.58875 * 294.71912 * 10 9 8 40 40 H 1.09002 * 109.58604 * 174.43479 * 10 9 8 41 41 H 0.96993 * 119.99639 * 4.98764 * 14 12 11 42 42 H 1.09007 * 109.47228 * 300.00071 * 15 14 12 43 43 H 1.08998 * 109.47443 * 60.00096 * 15 14 12 44 44 H 0.96998 * 119.99708 * 180.02562 * 19 18 16 45 45 H 1.09010 * 109.58451 * 173.39329 * 24 11 10 46 46 H 1.08999 * 109.58904 * 293.67543 * 24 11 10 47 47 H 1.08993 * 109.50186 * 61.41922 * 25 8 6 48 48 H 1.09004 * 109.52060 * 301.33763 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6645 -0.1902 2.5268 6 6 2.7932 -1.7865 1.0725 7 8 3.0858 -2.2011 -0.0291 8 6 3.2959 -2.4967 2.3030 9 6 4.1454 -1.5304 3.1375 10 6 4.6259 -2.2483 4.4027 11 7 5.3202 -3.4835 4.0143 12 6 6.5692 -3.7362 4.4531 13 8 7.1682 -2.8977 5.0983 14 7 7.1543 -4.9185 4.1766 15 6 8.4668 -5.2367 4.7443 16 6 8.8944 -6.6066 4.2841 17 1 8.2524 -7.1826 3.6341 18 6 10.1046 -7.1249 4.6936 19 7 10.8861 -6.4235 5.4855 20 14 10.6343 -8.8232 4.1237 21 1 9.5850 -9.4001 3.2454 22 1 11.9082 -8.7166 3.3680 23 1 10.8310 -9.7024 5.3041 24 6 4.6268 -4.4382 3.1388 25 6 4.1465 -3.6987 1.8861 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1301 1.4423 0.0005 33 1 2.4158 0.5273 2.8567 34 1 0.6905 0.2973 2.4844 35 1 1.6238 -1.0227 3.2292 36 1 2.4482 -2.8394 2.8962 37 1 3.5474 -0.6629 3.4164 38 1 5.0069 -1.2066 2.5536 39 1 3.7699 -2.4926 5.0317 40 1 5.3103 -1.6017 4.9521 41 1 6.7063 -5.5586 3.6018 42 1 9.1956 -4.4979 4.4109 43 1 8.4055 -5.2213 5.8324 44 1 11.7377 -6.7880 5.7733 45 1 5.3125 -5.2356 2.8520 46 1 3.7723 -4.8630 3.6655 47 1 5.0078 -3.3541 1.3139 48 1 3.5485 -4.3729 1.2729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426417505.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:22 Heat of formation + Delta-G solvation = -64.272647 kcal Electronic energy + Delta-G solvation = -26651.016105 eV Core-core repulsion = 22934.060676 eV Total energy + Delta-G solvation = -3716.955430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81651 -39.52749 -37.19949 -36.55917 -34.23214 -33.58190 -32.36133 -31.78149 -30.85666 -27.63258 -27.41086 -27.32001 -25.72887 -23.40975 -22.82660 -21.91176 -20.69527 -19.38202 -19.08473 -18.02330 -17.46517 -16.46021 -15.95846 -15.79756 -15.59713 -15.08116 -14.66875 -14.53215 -14.43016 -14.22833 -14.04347 -13.45525 -13.38646 -13.25629 -13.14256 -12.80997 -12.65967 -12.55892 -12.46948 -12.15483 -11.98256 -11.85410 -11.68671 -11.64937 -11.27975 -11.21547 -10.89563 -10.88340 -10.82002 -10.67786 -10.25264 -9.82815 -9.34921 -9.30041 -8.99527 -8.70671 -8.39579 -7.69804 -6.12631 -4.18863 2.41194 2.65678 3.20475 3.26343 3.33758 3.37322 3.89871 4.19021 4.34007 4.45362 4.57550 4.58101 4.66249 4.68261 4.79765 4.86036 5.00291 5.03985 5.10858 5.15110 5.20602 5.23374 5.23578 5.28615 5.37148 5.37752 5.52927 5.57958 5.60341 5.69389 5.78406 5.81993 5.83859 5.97244 6.02863 6.20404 6.27692 6.79835 7.06889 7.16135 7.54902 7.57186 7.60717 7.88668 7.95053 8.05188 8.79129 8.93253 9.34979 9.50671 10.97688 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.002534 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.895463 B =11048.034332 C =11531.253872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 C -0.161 4.161 4 N -0.614 5.614 5 C 0.072 3.928 6 C 0.521 3.479 7 O -0.538 6.538 8 C -0.102 4.102 9 C -0.137 4.137 10 C 0.134 3.866 11 N -0.639 5.639 12 C 0.698 3.302 13 O -0.599 6.599 14 N -0.729 5.729 15 C 0.266 3.734 16 C -0.540 4.540 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.114 3.886 25 C -0.113 4.113 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.386 0.614 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.265 0.735 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.226 13.107 -7.841 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 C -0.219 4.219 4 N -0.348 5.348 5 C -0.070 4.070 6 C 0.309 3.691 7 O -0.414 6.414 8 C -0.123 4.123 9 C -0.175 4.175 10 C 0.010 3.990 11 N -0.379 5.379 12 C 0.399 3.601 13 O -0.479 6.479 14 N -0.383 5.383 15 C 0.145 3.855 16 C -0.578 4.578 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.010 4.010 25 C -0.152 4.152 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.221 0.779 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.383 13.457 -7.821 28.089 hybrid contribution 0.045 -1.128 -0.509 1.238 sum -23.338 12.329 -8.330 27.678 Atomic orbital electron populations 1.22141 0.94984 1.02415 1.02336 1.21065 0.93976 0.93215 0.89246 1.22132 1.01891 0.95535 1.02310 1.47939 1.51344 1.28527 1.06990 1.21967 1.00950 1.00369 0.83755 1.20828 0.77205 0.79818 0.91229 1.90688 1.57242 1.65384 1.28077 1.21362 0.99510 0.96884 0.94592 1.22287 1.00082 0.97856 0.97285 1.21283 0.96631 0.86051 0.95033 1.47310 1.15119 1.22057 1.53424 1.16053 0.80341 0.83475 0.80222 1.90850 1.63572 1.46908 1.46527 1.45888 1.23411 1.16051 1.52974 1.18990 0.77060 0.95520 0.93978 1.21256 1.04163 1.01153 1.31260 0.91962 1.24946 0.96151 0.98118 0.94851 1.69994 1.11239 1.37445 1.33621 0.86362 0.78621 0.83445 0.78483 1.19648 1.20821 1.20831 1.21581 0.97302 0.91869 0.90277 1.21749 1.00133 0.95889 0.97445 0.92274 0.91397 0.92274 0.88157 0.91463 0.92315 0.92172 0.91993 0.91040 0.90472 0.88433 0.89653 0.90897 0.92139 0.88527 0.77927 0.95689 0.95814 0.92553 0.89668 0.91643 0.90580 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.17 37.16 0.34 -0.57 16 2 C 0.13 0.98 3.25 -67.93 -0.22 0.76 16 3 C -0.16 -1.01 9.19 37.15 0.34 -0.67 16 4 N -0.61 -5.06 2.76 -173.93 -0.48 -5.54 16 5 C 0.07 0.37 7.86 59.85 0.47 0.84 16 6 C 0.52 5.79 7.08 -10.98 -0.08 5.71 16 7 O -0.54 -8.04 15.31 5.56 0.09 -7.96 16 8 C -0.10 -0.99 1.69 -91.56 -0.15 -1.15 16 9 C -0.14 -1.35 5.02 -26.45 -0.13 -1.48 16 10 C 0.13 1.65 6.43 -3.71 -0.02 1.63 16 11 N -0.64 -9.93 2.97 -178.49 -0.53 -10.46 16 12 C 0.70 14.83 8.29 -86.91 -0.72 14.11 16 13 O -0.60 -15.14 15.77 5.29 0.08 -15.06 16 14 N -0.73 -16.16 5.46 -66.41 -0.36 -16.52 16 15 C 0.27 7.25 5.43 -5.19 -0.03 7.22 16 16 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 17 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.11 1.39 6.39 -3.71 -0.02 1.37 16 25 C -0.11 -1.31 4.65 -26.61 -0.12 -1.43 16 26 H 0.06 0.27 6.66 -51.93 -0.35 -0.07 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 1.00 6.90 -51.93 -0.36 0.65 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.29 6.92 -51.93 -0.36 -0.07 16 34 H 0.07 0.26 6.43 -51.93 -0.33 -0.07 16 35 H 0.08 0.33 6.02 -51.93 -0.31 0.02 16 36 H 0.10 0.74 7.40 -51.93 -0.38 0.36 16 37 H 0.09 0.61 4.51 -51.93 -0.23 0.37 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 1.40 6.99 -51.93 -0.36 1.04 16 41 H 0.39 7.43 5.81 -40.82 -0.24 7.20 16 42 H 0.03 0.76 8.14 -51.92 -0.42 0.33 16 43 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.09 1.09 5.65 -51.92 -0.29 0.80 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 48 H 0.08 0.87 8.07 -51.93 -0.42 0.46 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -35.51 371.95 -8.45 -43.96 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.80 Total: 2.77 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: -0.77 Total: 12.77 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.64 Total: -58.21 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.51 -8.45 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426417505.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.309 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds