Wall clock time and date at job start Tue Mar 31 2020 09:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47120 * 2 1 4 4 N 1.46503 * 109.46789 * 120.00206 * 2 1 3 5 5 C 1.46498 * 120.00104 * 299.99384 * 4 2 1 6 6 C 1.34778 * 119.99670 * 119.99941 * 4 2 1 7 7 O 1.21280 * 120.00319 * 359.97438 * 6 4 2 8 8 C 1.50707 * 119.99803 * 179.97438 * 6 4 2 9 9 C 1.53354 * 109.40373 * 300.12173 * 8 6 4 10 10 C 1.53195 * 109.14570 * 178.68089 * 9 8 6 11 11 N 1.46926 * 108.89465 * 54.57617 * 10 9 8 12 12 C 1.34774 * 120.63121 * 126.33965 * 11 10 9 13 13 O 1.21582 * 120.00014 * 354.77536 * 12 11 10 14 14 N 1.34782 * 119.99915 * 174.77166 * 12 11 10 15 15 C 1.46498 * 119.99675 * 184.98301 * 14 12 11 16 16 C 1.50704 * 109.47096 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99499 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00354 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46977 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46636 * 119.99923 * 20 18 16 23 23 H 1.48495 * 109.47132 * 239.99674 * 20 18 16 24 24 C 1.46926 * 118.73722 * 306.32250 * 11 10 9 25 25 C 1.53040 * 109.45905 * 180.02562 * 8 6 4 26 26 H 1.08996 * 109.46560 * 300.00023 * 1 2 3 27 27 H 1.09001 * 109.47002 * 59.99911 * 1 2 3 28 28 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47110 * 239.99757 * 2 1 3 30 30 H 1.09001 * 109.47256 * 299.99933 * 3 2 1 31 31 H 1.09002 * 109.47042 * 60.00338 * 3 2 1 32 32 H 1.09004 * 109.46640 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47213 * 270.00549 * 5 4 2 34 34 H 1.08998 * 109.47066 * 30.00767 * 5 4 2 35 35 H 1.09002 * 109.47014 * 150.00156 * 5 4 2 36 36 H 1.08994 * 109.45748 * 60.02660 * 8 6 4 37 37 H 1.08997 * 109.68505 * 58.71937 * 9 8 6 38 38 H 1.09002 * 109.47645 * 298.51565 * 9 8 6 39 39 H 1.08999 * 109.58875 * 294.71912 * 10 9 8 40 40 H 1.09002 * 109.58604 * 174.43479 * 10 9 8 41 41 H 0.96993 * 119.99639 * 4.98764 * 14 12 11 42 42 H 1.09007 * 109.47228 * 300.00071 * 15 14 12 43 43 H 1.08998 * 109.47443 * 60.00096 * 15 14 12 44 44 H 0.96998 * 119.99708 * 180.02562 * 19 18 16 45 45 H 1.09010 * 109.58451 * 173.39329 * 24 11 10 46 46 H 1.08999 * 109.58904 * 293.67543 * 24 11 10 47 47 H 1.08993 * 109.50186 * 61.41922 * 25 8 6 48 48 H 1.09004 * 109.52060 * 301.33763 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6645 -0.1902 2.5268 6 6 2.7932 -1.7865 1.0725 7 8 3.0858 -2.2011 -0.0291 8 6 3.2959 -2.4967 2.3030 9 6 4.1454 -1.5304 3.1375 10 6 4.6259 -2.2483 4.4027 11 7 5.3202 -3.4835 4.0143 12 6 6.5692 -3.7362 4.4531 13 8 7.1682 -2.8977 5.0983 14 7 7.1543 -4.9185 4.1766 15 6 8.4668 -5.2367 4.7443 16 6 8.8944 -6.6066 4.2841 17 1 8.2524 -7.1826 3.6341 18 6 10.1046 -7.1249 4.6936 19 7 10.8861 -6.4235 5.4855 20 14 10.6343 -8.8232 4.1237 21 1 9.5850 -9.4001 3.2454 22 1 11.9082 -8.7166 3.3680 23 1 10.8310 -9.7024 5.3041 24 6 4.6268 -4.4382 3.1388 25 6 4.1465 -3.6987 1.8861 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1301 1.4423 0.0005 33 1 2.4158 0.5273 2.8567 34 1 0.6905 0.2973 2.4844 35 1 1.6238 -1.0227 3.2292 36 1 2.4482 -2.8394 2.8962 37 1 3.5474 -0.6629 3.4164 38 1 5.0069 -1.2066 2.5536 39 1 3.7699 -2.4926 5.0317 40 1 5.3103 -1.6017 4.9521 41 1 6.7063 -5.5586 3.6018 42 1 9.1956 -4.4979 4.4109 43 1 8.4055 -5.2213 5.8324 44 1 11.7377 -6.7880 5.7733 45 1 5.3125 -5.2356 2.8520 46 1 3.7723 -4.8630 3.6655 47 1 5.0078 -3.3541 1.3139 48 1 3.5485 -4.3729 1.2729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426417505.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:21 Heat of formation + Delta-G solvation = -89.262084 kcal Electronic energy + Delta-G solvation = -26652.099729 eV Core-core repulsion = 22934.060676 eV Total energy + Delta-G solvation = -3718.039053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.76677 -40.88750 -38.33894 -37.44073 -36.20217 -34.78060 -34.09766 -32.71984 -31.91833 -29.27606 -28.10214 -27.94119 -26.92681 -24.83040 -24.17973 -23.08869 -21.72431 -20.69021 -20.09710 -19.39150 -18.26947 -18.04008 -17.29199 -17.12306 -16.66700 -16.55754 -16.19748 -15.45418 -15.33790 -15.17353 -14.97870 -14.86853 -14.55248 -14.43251 -14.04740 -13.90588 -13.82832 -13.56256 -13.38796 -13.12753 -13.05717 -12.89395 -12.84260 -12.74917 -12.73705 -12.26237 -12.23996 -12.12395 -11.82277 -11.71581 -11.60153 -11.44136 -11.09596 -10.81447 -10.71473 -10.03209 -9.64906 -9.37353 -8.28536 -6.44863 1.43041 1.44784 1.57753 1.58531 1.80699 2.01271 2.22481 2.38681 3.06276 3.17823 3.43204 3.65782 3.76492 3.93601 4.04411 4.14797 4.18352 4.25545 4.31555 4.36405 4.43944 4.60742 4.67550 4.70559 4.72613 4.74281 4.75942 4.83843 4.89522 4.92092 4.99509 5.05449 5.10560 5.12819 5.26393 5.27289 5.30153 5.34365 5.48482 5.59765 5.64852 5.76105 5.85451 6.11851 6.38431 6.66748 7.16650 7.18274 7.25284 7.70628 8.84085 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.002534 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.895463 B =11048.034332 C =11531.253872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.122 3.878 3 C -0.155 4.155 4 N -0.608 5.608 5 C 0.060 3.940 6 C 0.514 3.486 7 O -0.588 6.588 8 C -0.095 4.095 9 C -0.123 4.123 10 C 0.128 3.872 11 N -0.629 5.629 12 C 0.692 3.308 13 O -0.647 6.647 14 N -0.726 5.726 15 C 0.285 3.715 16 C -0.553 4.553 17 H 0.081 0.919 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.986 3.014 21 H -0.254 1.254 22 H -0.280 1.280 23 H -0.276 1.276 24 C 0.112 3.888 25 C -0.107 4.107 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.041 0.959 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.401 0.599 42 H -0.018 1.018 43 H -0.012 1.012 44 H 0.269 0.731 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.042 0.958 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.476 12.581 -7.958 31.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.019 3.981 3 C -0.213 4.213 4 N -0.340 5.340 5 C -0.082 4.082 6 C 0.303 3.697 7 O -0.468 6.468 8 C -0.116 4.116 9 C -0.162 4.162 10 C 0.005 3.995 11 N -0.367 5.367 12 C 0.393 3.607 13 O -0.530 6.530 14 N -0.382 5.382 15 C 0.162 3.838 16 C -0.591 4.591 17 H 0.099 0.901 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.809 3.191 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.202 1.202 24 C -0.011 4.011 25 C -0.146 4.146 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.060 0.940 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.239 0.761 42 H 0.000 1.000 43 H 0.006 0.994 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.121 0.879 47 H 0.061 0.939 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.743 12.968 -7.956 30.768 hybrid contribution 0.970 -0.830 -0.484 1.366 sum -25.773 12.138 -8.440 29.712 Atomic orbital electron populations 1.22074 0.92958 1.02196 1.03793 1.21138 0.95492 0.93447 0.88047 1.22085 1.00559 0.94818 1.03795 1.48048 1.49967 1.27393 1.08587 1.22286 1.02398 1.01355 0.82124 1.21061 0.77306 0.80469 0.90818 1.90672 1.59321 1.67017 1.29808 1.21339 1.00138 0.95779 0.94323 1.22202 0.99462 0.98862 0.95625 1.21597 0.96899 0.84481 0.96495 1.47376 1.13123 1.23634 1.52590 1.16265 0.81882 0.82541 0.79996 1.90810 1.65374 1.48176 1.48681 1.45513 1.22079 1.17185 1.53427 1.18406 0.78588 0.94911 0.91886 1.21603 1.04836 1.01134 1.31566 0.90069 1.26068 0.96043 1.02898 0.94596 1.70151 1.11865 1.39882 1.34957 0.85093 0.78374 0.77404 0.78224 1.17730 1.20526 1.20188 1.21838 0.97917 0.91011 0.90309 1.21648 0.99373 0.96928 0.96682 0.90364 0.90406 0.93288 0.91341 0.90330 0.90491 0.94172 0.91187 0.88825 0.88834 0.84715 0.86070 0.94050 0.88074 0.91073 0.76087 0.99992 0.99439 0.92222 0.90508 0.87859 0.93927 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.17 71.98 0.66 -0.70 16 2 C 0.12 1.72 3.25 44.99 0.15 1.87 16 3 C -0.15 -1.70 9.19 71.98 0.66 -1.04 16 4 N -0.61 -8.75 2.76 -822.58 -2.27 -11.02 16 5 C 0.06 0.37 7.86 127.77 1.00 1.37 16 6 C 0.51 10.85 7.08 87.66 0.62 11.47 16 7 O -0.59 -17.96 15.31 -3.03 -0.05 -18.00 16 8 C -0.09 -1.61 1.69 -11.41 -0.02 -1.63 16 9 C -0.12 -2.20 5.02 30.78 0.15 -2.05 16 10 C 0.13 2.92 6.43 86.36 0.56 3.47 16 11 N -0.63 -19.10 2.97 -836.89 -2.49 -21.58 16 12 C 0.69 30.29 8.29 179.05 1.49 31.77 16 13 O -0.65 -34.39 15.77 -3.97 -0.06 -34.45 16 14 N -0.73 -33.19 5.46 -482.29 -2.63 -35.82 16 15 C 0.29 16.38 5.43 85.63 0.47 16.85 16 16 C -0.55 -31.04 9.28 25.60 0.24 -30.80 16 17 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 18 C 0.00 0.20 5.46 84.65 0.46 0.66 16 19 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 20 Si 0.99 43.19 29.54 68.60 2.03 45.22 16 21 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 24 C 0.11 2.52 6.39 86.36 0.55 3.08 16 25 C -0.11 -2.36 4.65 30.67 0.14 -2.21 16 26 H 0.08 0.41 6.66 -2.39 -0.02 0.39 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 1.42 6.90 -2.38 -0.02 1.40 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.57 7.67 -2.39 -0.02 0.55 16 32 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.37 6.92 -2.39 -0.02 0.35 16 34 H 0.09 0.23 6.43 -2.39 -0.02 0.21 16 35 H 0.09 0.31 6.02 -2.39 -0.01 0.30 16 36 H 0.14 1.36 7.40 -2.39 -0.02 1.34 16 37 H 0.12 1.31 4.51 -2.39 -0.01 1.30 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 2.05 6.99 -2.39 -0.02 2.03 16 41 H 0.40 15.53 5.81 -92.71 -0.54 14.99 16 42 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 43 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 44 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.08 1.88 5.65 -2.38 -0.01 1.86 16 46 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.04 1.22 8.13 -2.39 -0.02 1.20 16 48 H 0.09 1.84 8.07 -2.38 -0.02 1.82 16 Total: -1.00 -83.78 371.95 2.36 -81.42 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.42 Total: 18.93 kcal Atomic # 6 Polarization: 24.98 SS G_CDS: 7.13 Total: 32.11 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -7.11 Total: -125.23 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.11 Total: -52.45 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -83.78 2.36 -81.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426417505.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.839 kcal (2) G-P(sol) polarization free energy of solvation -83.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds