Wall clock time and date at job start Tue Mar 31 2020 10:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46550 * 2 1 4 4 N 1.46496 * 109.47037 * 240.00606 * 2 1 3 5 5 C 1.34777 * 120.00374 * 84.99511 * 4 2 1 6 6 O 1.21589 * 119.99843 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00160 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00094 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.47372 * 180.02562 * 8 7 5 10 10 O 1.21291 * 119.99821 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99849 * 180.02562 * 9 8 7 12 12 C 1.37098 * 119.99460 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00677 * 0.02562 * 12 11 9 14 14 C 1.38954 * 119.99989 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99992 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00294 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47199 * 60.00483 * 16 14 12 18 18 H 1.48498 * 109.47368 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47209 * 300.00393 * 16 14 12 20 20 C 1.52992 * 109.47106 * 120.00405 * 2 1 3 21 21 H 1.08998 * 109.46862 * 180.02562 * 20 2 1 22 22 C 1.52997 * 109.47482 * 60.00162 * 20 2 1 23 23 C 1.53000 * 109.47060 * 180.02562 * 22 20 2 24 24 C 1.52996 * 109.47328 * 60.00126 * 23 22 20 25 25 C 1.53002 * 109.46891 * 299.99597 * 24 23 22 26 26 H 1.09001 * 109.47142 * 300.00176 * 25 24 23 27 27 C 1.52996 * 109.46891 * 179.97438 * 25 24 23 28 28 C 1.52997 * 109.46978 * 60.00410 * 25 24 23 29 29 H 1.09002 * 109.47596 * 299.99664 * 1 2 3 30 30 H 1.08996 * 109.47407 * 60.00059 * 1 2 3 31 31 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99943 * 264.99747 * 4 2 1 33 33 H 0.97005 * 120.00157 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47332 * 300.00601 * 8 7 5 35 35 H 1.09003 * 109.46959 * 60.00736 * 8 7 5 36 36 H 0.96996 * 120.00806 * 0.02562 * 11 9 8 37 37 H 0.97001 * 120.00542 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.47153 * 59.99783 * 22 20 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 22 20 2 40 40 H 1.09004 * 109.46724 * 180.02562 * 23 22 20 41 41 H 1.09001 * 109.47194 * 299.99650 * 23 22 20 42 42 H 1.08992 * 109.47554 * 59.99639 * 24 23 22 43 43 H 1.09004 * 109.47108 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.47261 * 60.00575 * 27 25 24 45 45 H 1.09004 * 109.47368 * 180.02562 * 27 25 24 46 46 H 1.09001 * 109.47372 * 300.00036 * 27 25 24 47 47 H 1.09001 * 109.47375 * 59.99908 * 28 25 24 48 48 H 1.09000 * 109.47140 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1618 -2.4116 7 7 2.5967 -0.6532 -3.4575 8 6 2.7370 0.0778 -4.7193 9 6 3.2535 -0.8542 -5.7851 10 8 3.4822 -2.0148 -5.5169 11 7 3.4620 -0.3978 -7.0359 12 6 3.9323 -1.2456 -8.0053 13 1 4.1352 -2.2792 -7.7668 14 6 4.1469 -0.7753 -9.2951 15 7 3.8995 0.4823 -9.5856 16 14 4.7870 -1.9305 -10.6161 17 1 3.8314 -3.0525 -10.7979 18 1 4.9298 -1.1894 -11.8950 19 1 6.1091 -2.4678 -10.2056 20 6 2.0400 -0.7213 1.2491 21 1 3.1300 -0.7209 1.2493 22 6 1.5301 -2.1638 1.2491 23 6 2.0396 -2.8849 2.4986 24 6 1.5291 -2.1636 3.7476 25 6 2.0391 -0.7210 3.7476 26 1 3.1291 -0.7210 3.7481 27 6 1.5280 0.0005 4.9963 28 6 1.5295 0.0001 2.4982 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 -1.1527 33 1 2.8275 -1.5944 -3.4140 34 1 1.7665 0.4719 -5.0208 35 1 3.4382 0.9016 -4.5858 36 1 3.2802 0.5305 -7.2502 37 1 4.0496 0.8107 -10.4859 38 1 1.8934 -2.6776 0.3591 39 1 0.4401 -2.1638 1.2491 40 1 1.6767 -3.9127 2.4983 41 1 3.1296 -2.8849 2.4991 42 1 0.4391 -2.1635 3.7472 43 1 1.8917 -2.6776 4.6378 44 1 1.8906 -0.5131 5.8866 45 1 1.8909 1.0283 4.9962 46 1 0.4380 0.0005 4.9954 47 1 0.4395 0.0001 2.4977 48 1 1.8924 1.0279 2.4984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455606174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:38 Heat of formation + Delta-G solvation = -103.572089 kcal Electronic energy + Delta-G solvation = -25823.016999 eV Core-core repulsion = 22104.357417 eV Total energy + Delta-G solvation = -3718.659581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.31845 -39.20113 -38.13506 -35.72703 -34.35523 -33.61066 -32.58247 -31.80326 -31.32383 -28.87396 -27.35706 -26.71648 -24.71385 -23.94017 -22.32357 -20.92614 -20.29711 -19.60095 -19.39229 -18.38959 -17.91775 -16.26511 -15.66337 -15.48988 -15.35931 -15.03653 -14.80109 -14.73374 -14.42952 -14.32017 -14.01839 -13.85006 -13.62007 -13.38401 -12.97981 -12.86841 -12.48685 -12.16569 -12.12161 -11.95369 -11.89578 -11.81301 -11.61488 -11.36604 -11.19769 -11.09385 -10.96320 -10.65757 -10.49766 -10.41144 -10.30132 -10.18543 -9.94757 -9.61022 -9.08925 -8.60310 -8.55849 -8.08208 -6.49640 -3.91711 2.87593 3.14817 3.22416 3.26479 3.46230 3.77543 4.10300 4.28188 4.33257 4.38993 4.49795 4.71789 4.84048 4.90909 4.93318 5.03944 5.13981 5.18552 5.19074 5.24594 5.29561 5.34624 5.38728 5.46782 5.53415 5.60883 5.71607 5.73514 5.83078 5.85942 5.91187 5.92660 5.95819 5.99625 6.03963 6.07242 6.11024 6.13279 6.31697 6.64806 6.80584 7.17230 7.47295 7.94069 8.30121 8.47265 8.86498 9.06277 9.41526 9.89581 10.67181 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.035379 B = 0.002089 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.241534 B =13401.714429 C =13896.961269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.167 3.833 3 H 0.087 0.913 4 N -0.745 5.745 5 C 0.704 3.296 6 O -0.599 6.599 7 N -0.726 5.726 8 C 0.129 3.871 9 C 0.429 3.571 10 O -0.598 6.598 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.105 0.895 14 C 0.025 3.975 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.094 4.094 21 H 0.076 0.924 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.092 4.092 26 H 0.069 0.931 27 C -0.148 4.148 28 C -0.108 4.108 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.394 0.606 33 H 0.406 0.594 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.396 0.604 37 H 0.275 0.725 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 -2.003 25.657 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.105 0.895 4 N -0.401 5.401 5 C 0.404 3.596 6 O -0.478 6.478 7 N -0.383 5.383 8 C 0.001 3.999 9 C 0.215 3.785 10 O -0.485 6.485 11 N -0.184 5.184 12 C -0.435 4.435 13 H 0.122 0.878 14 C -0.178 4.178 15 N -0.535 5.535 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.113 4.113 21 H 0.094 0.906 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.151 4.151 25 C -0.110 4.110 26 H 0.087 0.913 27 C -0.205 4.205 28 C -0.146 4.146 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.229 0.771 33 H 0.243 0.757 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.652 -1.562 25.539 26.204 hybrid contribution 0.436 -0.809 -0.904 1.289 sum -5.216 -2.371 24.636 25.293 Atomic orbital electron populations 1.22310 0.95766 1.02085 1.02408 1.20733 0.93785 0.96909 0.82437 0.89516 1.45223 1.72307 1.13674 1.08905 1.15889 0.78388 0.85010 0.80309 1.90893 1.57699 1.14390 1.84786 1.44785 1.70307 1.14844 1.08363 1.20767 1.02029 0.94275 0.82876 1.19782 0.85797 0.88878 0.84092 1.90486 1.58338 1.18513 1.81173 1.41780 1.56221 1.13021 1.07400 1.19675 1.40435 0.94902 0.88460 0.87761 1.25327 0.97314 0.96611 0.98504 1.69608 1.47793 1.14084 1.22010 0.85868 0.79436 0.79511 0.79108 1.19805 1.20867 1.19806 1.21431 1.00845 0.95187 0.93838 0.90566 1.21666 1.01325 0.94843 0.97736 1.21530 1.00838 0.98824 0.94538 1.21595 1.00739 0.95121 0.97672 1.21129 1.00394 0.94890 0.94638 0.91271 1.21829 1.01171 1.00260 0.97241 1.21661 1.01208 0.98859 0.92822 0.91704 0.92010 0.92357 0.77099 0.75701 0.90093 0.90082 0.77009 0.91553 0.92026 0.91234 0.92010 0.92006 0.92011 0.92258 0.92844 0.92672 0.92723 0.91235 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 8.78 37.16 0.33 -1.34 16 2 C 0.17 1.75 2.40 -67.94 -0.16 1.58 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 N -0.74 -9.05 5.00 -58.68 -0.29 -9.34 16 5 C 0.70 11.60 8.53 -86.92 -0.74 10.86 16 6 O -0.60 -11.81 16.01 5.29 0.08 -11.73 16 7 N -0.73 -12.44 5.53 -66.41 -0.37 -12.81 16 8 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 9 C 0.43 9.95 7.85 -10.98 -0.09 9.87 16 10 O -0.60 -15.41 15.24 5.55 0.08 -15.33 16 11 N -0.55 -13.76 5.29 -10.96 -0.06 -13.81 16 12 C -0.31 -8.35 9.68 -14.93 -0.14 -8.49 16 13 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -24.02 13.05 55.50 0.72 -23.30 16 16 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 C -0.09 -0.74 2.18 -90.62 -0.20 -0.94 16 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 22 C -0.12 -0.84 4.68 -26.73 -0.13 -0.97 16 23 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 24 C -0.11 -0.69 5.20 -26.73 -0.14 -0.83 16 25 C -0.09 -0.58 2.72 -90.62 -0.25 -0.82 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 28 C -0.11 -0.74 4.13 -26.73 -0.11 -0.85 16 29 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 32 H 0.39 4.00 6.88 -40.82 -0.28 3.72 16 33 H 0.41 6.76 7.45 -40.82 -0.30 6.45 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 39 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -31.20 377.26 -8.72 -39.92 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -7.98 Total: 15.45 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -1.57 Total: 9.64 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.01 Total: -59.26 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: 0.17 Total: -27.06 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.20 -8.72 -39.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455606174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.652 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds