Wall clock time and date at job start Tue Mar 31 2020 10:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46550 * 2 1 4 4 N 1.46496 * 109.47037 * 240.00606 * 2 1 3 5 5 C 1.34777 * 120.00374 * 84.99511 * 4 2 1 6 6 O 1.21589 * 119.99843 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00160 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00094 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.47372 * 180.02562 * 8 7 5 10 10 O 1.21291 * 119.99821 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99849 * 180.02562 * 9 8 7 12 12 C 1.37098 * 119.99460 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00677 * 0.02562 * 12 11 9 14 14 C 1.38954 * 119.99989 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99992 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00294 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47199 * 60.00483 * 16 14 12 18 18 H 1.48498 * 109.47368 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47209 * 300.00393 * 16 14 12 20 20 C 1.52992 * 109.47106 * 120.00405 * 2 1 3 21 21 H 1.08998 * 109.46862 * 180.02562 * 20 2 1 22 22 C 1.52997 * 109.47482 * 60.00162 * 20 2 1 23 23 C 1.53000 * 109.47060 * 180.02562 * 22 20 2 24 24 C 1.52996 * 109.47328 * 60.00126 * 23 22 20 25 25 C 1.53002 * 109.46891 * 299.99597 * 24 23 22 26 26 H 1.09001 * 109.47142 * 300.00176 * 25 24 23 27 27 C 1.52996 * 109.46891 * 179.97438 * 25 24 23 28 28 C 1.52997 * 109.46978 * 60.00410 * 25 24 23 29 29 H 1.09002 * 109.47596 * 299.99664 * 1 2 3 30 30 H 1.08996 * 109.47407 * 60.00059 * 1 2 3 31 31 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99943 * 264.99747 * 4 2 1 33 33 H 0.97005 * 120.00157 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47332 * 300.00601 * 8 7 5 35 35 H 1.09003 * 109.46959 * 60.00736 * 8 7 5 36 36 H 0.96996 * 120.00806 * 0.02562 * 11 9 8 37 37 H 0.97001 * 120.00542 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.47153 * 59.99783 * 22 20 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 22 20 2 40 40 H 1.09004 * 109.46724 * 180.02562 * 23 22 20 41 41 H 1.09001 * 109.47194 * 299.99650 * 23 22 20 42 42 H 1.08992 * 109.47554 * 59.99639 * 24 23 22 43 43 H 1.09004 * 109.47108 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.47261 * 60.00575 * 27 25 24 45 45 H 1.09004 * 109.47368 * 180.02562 * 27 25 24 46 46 H 1.09001 * 109.47372 * 300.00036 * 27 25 24 47 47 H 1.09001 * 109.47375 * 59.99908 * 28 25 24 48 48 H 1.09000 * 109.47140 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1618 -2.4116 7 7 2.5967 -0.6532 -3.4575 8 6 2.7370 0.0778 -4.7193 9 6 3.2535 -0.8542 -5.7851 10 8 3.4822 -2.0148 -5.5169 11 7 3.4620 -0.3978 -7.0359 12 6 3.9323 -1.2456 -8.0053 13 1 4.1352 -2.2792 -7.7668 14 6 4.1469 -0.7753 -9.2951 15 7 3.8995 0.4823 -9.5856 16 14 4.7870 -1.9305 -10.6161 17 1 3.8314 -3.0525 -10.7979 18 1 4.9298 -1.1894 -11.8950 19 1 6.1091 -2.4678 -10.2056 20 6 2.0400 -0.7213 1.2491 21 1 3.1300 -0.7209 1.2493 22 6 1.5301 -2.1638 1.2491 23 6 2.0396 -2.8849 2.4986 24 6 1.5291 -2.1636 3.7476 25 6 2.0391 -0.7210 3.7476 26 1 3.1291 -0.7210 3.7481 27 6 1.5280 0.0005 4.9963 28 6 1.5295 0.0001 2.4982 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 -1.1527 33 1 2.8275 -1.5944 -3.4140 34 1 1.7665 0.4719 -5.0208 35 1 3.4382 0.9016 -4.5858 36 1 3.2802 0.5305 -7.2502 37 1 4.0496 0.8107 -10.4859 38 1 1.8934 -2.6776 0.3591 39 1 0.4401 -2.1638 1.2491 40 1 1.6767 -3.9127 2.4983 41 1 3.1296 -2.8849 2.4991 42 1 0.4391 -2.1635 3.7472 43 1 1.8917 -2.6776 4.6378 44 1 1.8906 -0.5131 5.8866 45 1 1.8909 1.0283 4.9962 46 1 0.4380 0.0005 4.9954 47 1 0.4395 0.0001 2.4977 48 1 1.8924 1.0279 2.4984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455606174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:37 Heat of formation + Delta-G solvation = -124.407857 kcal Electronic energy + Delta-G solvation = -25823.920505 eV Core-core repulsion = 22104.357417 eV Total energy + Delta-G solvation = -3719.563088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42748 -40.36024 -39.70803 -36.67359 -36.17340 -35.24527 -33.42115 -33.21063 -32.58395 -29.74052 -28.85721 -27.23937 -26.43203 -24.92595 -22.89459 -22.06788 -21.37996 -21.01435 -20.15844 -20.10686 -19.52844 -17.43927 -17.40195 -16.84713 -16.50664 -16.19528 -15.94197 -15.86625 -15.62536 -15.38372 -15.25961 -15.02383 -14.80415 -14.17221 -13.95891 -13.93327 -13.53805 -13.50455 -13.40705 -13.12912 -12.89340 -12.73877 -12.59056 -12.46614 -12.37261 -12.13365 -12.02627 -11.80865 -11.58756 -11.55814 -11.35071 -11.23023 -10.96984 -10.78459 -10.55184 -10.37823 -10.09902 -9.79814 -8.50330 -6.00747 1.38524 1.42678 1.53213 1.64488 1.90396 2.14918 2.29216 3.05408 3.16687 3.34086 3.63959 3.76132 3.85405 4.10022 4.20840 4.25537 4.30947 4.39831 4.43852 4.46388 4.51664 4.59353 4.63411 4.65939 4.76431 4.82238 4.87881 4.96862 5.03755 5.05169 5.15302 5.22089 5.24565 5.32809 5.36474 5.39015 5.40149 5.44303 5.48964 5.50975 5.63250 5.69801 5.92091 5.99448 6.48527 7.03664 7.05704 7.43460 7.56896 7.94801 8.66297 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.035379 B = 0.002089 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.241534 B =13401.714429 C =13896.961269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.165 3.835 3 H 0.066 0.934 4 N -0.728 5.728 5 C 0.704 3.296 6 O -0.632 6.632 7 N -0.726 5.726 8 C 0.142 3.858 9 C 0.434 3.566 10 O -0.624 6.624 11 N -0.559 5.559 12 C -0.338 4.338 13 H 0.087 0.913 14 C -0.012 4.012 15 N -0.916 5.916 16 Si 0.998 3.002 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.083 4.083 21 H 0.071 0.929 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.090 4.090 26 H 0.064 0.936 27 C -0.146 4.146 28 C -0.105 4.105 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.406 0.594 33 H 0.409 0.591 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 -2.754 26.688 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.060 3.940 3 H 0.084 0.916 4 N -0.384 5.384 5 C 0.403 3.597 6 O -0.514 6.514 7 N -0.383 5.383 8 C 0.014 3.986 9 C 0.221 3.779 10 O -0.512 6.512 11 N -0.195 5.195 12 C -0.467 4.467 13 H 0.105 0.895 14 C -0.212 4.212 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.195 1.195 20 C -0.102 4.102 21 H 0.090 0.910 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.108 4.108 26 H 0.083 0.917 27 C -0.204 4.204 28 C -0.143 4.143 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.243 0.757 33 H 0.247 0.753 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.893 -2.327 26.614 27.358 hybrid contribution 0.491 -0.564 -1.135 1.359 sum -5.403 -2.891 25.479 26.206 Atomic orbital electron populations 1.22257 0.95030 1.02697 1.01971 1.20880 0.94319 0.96131 0.82667 0.91580 1.45180 1.71073 1.14164 1.08018 1.16001 0.78095 0.84660 0.80916 1.90872 1.59170 1.15940 1.85381 1.44706 1.70715 1.14853 1.08045 1.20563 1.02365 0.93371 0.82333 1.20411 0.84289 0.88990 0.84237 1.90462 1.59079 1.19963 1.81692 1.41831 1.56823 1.12973 1.07838 1.19706 1.42459 0.94722 0.89824 0.89529 1.26151 0.96914 0.98171 1.00001 1.69678 1.47909 1.15249 1.22751 0.84911 0.78763 0.77617 0.76588 1.19477 1.19645 1.19483 1.21339 1.00484 0.95605 0.92812 0.91032 1.21665 1.01504 0.94115 0.98180 1.21515 1.00677 0.99077 0.94293 1.21584 1.00872 0.94812 0.97656 1.21104 1.00125 0.95111 0.94507 0.91723 1.21814 1.01341 1.00170 0.97041 1.21652 1.01483 0.98648 0.92553 0.89767 0.94809 0.91170 0.75675 0.75321 0.89207 0.89187 0.76707 0.91068 0.92135 0.90888 0.91465 0.92277 0.91740 0.91720 0.92375 0.92777 0.92430 0.90702 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 8.78 71.98 0.63 -2.40 16 2 C 0.16 3.32 2.40 44.99 0.11 3.43 16 3 H 0.07 1.65 7.58 -2.39 -0.02 1.63 16 4 N -0.73 -17.12 5.00 -457.83 -2.29 -19.41 16 5 C 0.70 22.90 8.53 179.06 1.53 24.42 16 6 O -0.63 -24.95 16.01 -4.00 -0.06 -25.01 16 7 N -0.73 -24.53 5.53 -482.29 -2.67 -27.20 16 8 C 0.14 5.37 6.15 85.64 0.53 5.89 16 9 C 0.43 20.25 7.85 87.66 0.69 20.94 16 10 O -0.62 -32.37 15.24 -3.06 -0.05 -32.41 16 11 N -0.56 -28.35 5.29 -306.98 -1.62 -29.98 16 12 C -0.34 -18.70 9.68 84.04 0.81 -17.88 16 13 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 14 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 15 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 16 Si 1.00 41.86 29.55 68.60 2.03 43.89 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 C -0.08 -1.20 2.18 -10.79 -0.02 -1.22 16 21 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 22 C -0.12 -1.45 4.68 30.59 0.14 -1.30 16 23 C -0.12 -1.30 5.92 30.59 0.18 -1.11 16 24 C -0.11 -1.12 5.20 30.59 0.16 -0.96 16 25 C -0.09 -0.97 2.72 -10.80 -0.03 -1.00 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 C -0.15 -1.39 9.19 71.98 0.66 -0.73 16 28 C -0.11 -1.29 4.13 30.60 0.13 -1.16 16 29 H 0.08 1.25 6.43 -2.39 -0.02 1.23 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.15 6.43 -2.39 -0.02 1.13 16 32 H 0.41 7.73 6.88 -92.70 -0.64 7.09 16 33 H 0.41 13.40 7.45 -92.70 -0.69 12.71 16 34 H 0.09 3.26 8.14 -2.39 -0.02 3.25 16 35 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.40 19.48 7.90 -92.71 -0.73 18.74 16 37 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 38 H 0.06 0.76 6.51 -2.39 -0.02 0.75 16 39 H 0.07 0.88 6.43 -2.39 -0.02 0.86 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.07 0.85 6.43 -2.39 -0.02 0.83 16 48 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -66.30 377.26 0.52 -65.78 By element: Atomic # 1 Polarization: 47.31 SS G_CDS: -1.08 Total: 46.23 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 5.98 Total: 26.77 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -6.30 Total: -125.24 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -0.11 Total: -57.43 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -66.30 0.52 -65.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455606174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.631 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds