Wall clock time and date at job start Tue Mar 31 2020 11:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.53923 * 2 1 4 4 N 1.47313 * 110.59729 * 123.00267 * 2 1 3 5 5 C 1.34521 * 106.62361 * 118.52362 * 4 2 1 6 6 O 1.21538 * 123.77591 * 179.97438 * 5 4 2 7 7 N 1.33791 * 112.45574 * 359.74671 * 5 4 2 8 8 C 1.46505 * 124.18088 * 180.30903 * 7 5 4 9 9 C 1.53002 * 109.46700 * 270.14531 * 8 7 5 10 10 N 1.46903 * 109.46988 * 186.66672 * 9 8 7 11 11 C 1.46896 * 111.00306 * 163.87481 * 10 9 8 12 12 C 1.50696 * 109.47408 * 192.33619 * 11 10 9 13 13 H 1.07997 * 119.99878 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99993 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00296 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99945 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47311 * 89.99906 * 16 14 12 18 18 H 1.48508 * 109.46965 * 210.00007 * 16 14 12 19 19 H 1.48497 * 109.46931 * 329.99586 * 16 14 12 20 20 C 1.46902 * 111.00156 * 287.82866 * 10 9 8 21 21 C 1.53000 * 109.47206 * 318.39148 * 20 10 9 22 22 C 1.52995 * 109.47599 * 79.39958 * 21 20 10 23 23 C 1.52997 * 109.46780 * 199.40499 * 21 20 10 24 24 C 1.53004 * 109.46641 * 319.39916 * 21 20 10 25 25 C 1.34771 * 111.64498 * 0.43903 * 7 5 4 26 26 O 1.21232 * 127.15894 * 179.86020 * 25 7 5 27 27 H 1.08993 * 109.47859 * 182.82999 * 1 2 3 28 28 H 1.08999 * 109.46991 * 302.82900 * 1 2 3 29 29 H 1.08997 * 109.47112 * 62.82290 * 1 2 3 30 30 H 0.97007 * 126.68890 * 298.53810 * 4 2 1 31 31 H 1.08994 * 109.46977 * 30.14127 * 8 7 5 32 32 H 1.08995 * 109.47456 * 150.14534 * 8 7 5 33 33 H 1.08997 * 109.47601 * 306.66362 * 9 8 7 34 34 H 1.08996 * 109.47182 * 66.67159 * 9 8 7 35 35 H 1.09004 * 109.47103 * 312.33713 * 11 10 9 36 36 H 1.09006 * 109.47222 * 72.33302 * 11 10 9 37 37 H 0.96999 * 120.00201 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.46506 * 78.38685 * 20 10 9 39 39 H 1.08992 * 109.47290 * 198.38298 * 20 10 9 40 40 H 1.09004 * 109.47101 * 59.96599 * 22 21 20 41 41 H 1.08999 * 109.47197 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.47030 * 299.96895 * 22 21 20 43 43 H 1.09001 * 109.47817 * 59.99872 * 23 21 20 44 44 H 1.09006 * 109.46829 * 179.97438 * 23 21 20 45 45 H 1.08996 * 109.47272 * 299.99143 * 23 21 20 46 46 H 1.08997 * 109.47127 * 65.79634 * 24 21 20 47 47 H 1.09003 * 109.46840 * 185.79922 * 24 21 20 48 48 H 1.09000 * 109.47133 * 305.79597 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 7 2.0482 -0.7511 1.1565 5 6 2.7598 -1.7791 0.6601 6 8 3.3289 -2.6023 1.3498 7 7 2.7669 -1.7970 -0.6777 8 6 3.4569 -2.8073 -1.4836 9 6 4.8877 -2.3445 -1.7657 10 7 5.5281 -3.2766 -2.7032 11 6 6.7360 -2.6839 -3.2926 12 6 7.1925 -3.5258 -4.4561 13 1 6.6407 -4.4128 -4.7301 14 6 8.3152 -3.1643 -5.1701 15 7 8.9874 -2.0844 -4.8362 16 14 8.8806 -4.2075 -6.6128 17 1 8.2354 -3.7208 -7.8586 18 1 10.3561 -4.1075 -6.7478 19 1 8.4998 -5.6236 -6.3789 20 6 5.8351 -4.5549 -2.0476 21 6 6.3850 -4.2894 -0.6448 22 6 5.2270 -3.9866 0.3082 23 6 7.1419 -5.5242 -0.1517 24 6 7.3362 -3.0918 -0.6882 25 6 2.0632 -0.7692 -1.1923 26 8 1.8886 -0.5158 -2.3649 27 1 -0.3634 -1.0263 0.0507 28 1 -0.3633 0.5571 0.8635 29 1 -0.3633 0.4694 -0.9142 30 1 1.9042 -0.5447 2.0933 31 1 3.4811 -3.7515 -0.9398 32 1 2.9270 -2.9443 -2.4262 33 1 4.8673 -1.3463 -2.2029 34 1 5.4525 -2.3214 -0.8337 35 1 6.5134 -1.6748 -3.6395 36 1 7.5249 -2.6440 -2.5413 37 1 9.7775 -1.8302 -5.3383 38 1 4.9267 -5.1531 -1.9746 39 1 6.5792 -5.0943 -2.6336 40 1 4.5490 -4.8396 0.3387 41 1 5.6189 -3.7979 1.3077 42 1 4.6882 -3.1065 -0.0428 43 1 7.9670 -5.7399 -0.8305 44 1 7.5341 -5.3349 0.8476 45 1 6.4643 -6.3774 -0.1207 46 1 6.7757 -2.1915 -0.9400 47 1 7.8068 -2.9660 0.2870 48 1 8.1039 -3.2647 -1.4424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459336565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:01 Heat of formation + Delta-G solvation = 26.458400 kcal Electronic energy + Delta-G solvation = -28336.371821 eV Core-core repulsion = 24623.350785 eV Total energy + Delta-G solvation = -3713.021036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57449 -39.67569 -38.61329 -36.38077 -35.27428 -33.77929 -32.34273 -30.89744 -30.00625 -27.61054 -26.63371 -26.35061 -25.40102 -24.53823 -22.89944 -22.19105 -20.52496 -20.08575 -18.43750 -18.14279 -17.24043 -16.37545 -16.22890 -15.79637 -15.60130 -15.44734 -14.80791 -14.63234 -14.18006 -14.14766 -13.91935 -13.62384 -13.26719 -13.05349 -12.88017 -12.80798 -12.38231 -12.25918 -11.92106 -11.76085 -11.22396 -11.13510 -11.04244 -10.89065 -10.83843 -10.76774 -10.67672 -10.45977 -10.13604 -10.04291 -9.96244 -9.77284 -9.70167 -9.51292 -9.32664 -9.04362 -8.34988 -6.94154 -5.96785 -3.96107 1.56252 2.15743 2.94923 2.98127 3.35596 3.41630 3.45100 3.79140 4.39105 4.47205 4.55297 4.94935 5.03462 5.13157 5.23353 5.34431 5.37830 5.40527 5.45729 5.49458 5.57802 5.59209 5.63408 5.82800 6.05232 6.05932 6.12502 6.22575 6.29014 6.32234 6.39435 6.41240 6.51913 6.58162 6.62192 6.75703 6.87630 6.98160 7.00483 7.03515 7.32342 7.36349 7.54292 7.86583 8.05321 8.16404 8.27744 8.61281 9.10531 9.66338 11.13559 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.004209 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.393818 B = 6650.801349 C = 7756.459266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.089 3.911 3 H 0.126 0.874 4 N -0.729 5.729 5 C 0.696 3.304 6 O -0.530 6.530 7 N -0.572 5.572 8 C 0.108 3.892 9 C -0.001 4.001 10 N -0.525 5.525 11 C 0.162 3.838 12 C -0.501 4.501 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.900 5.900 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.274 1.274 20 C 0.068 3.932 21 C -0.105 4.105 22 C -0.163 4.163 23 C -0.133 4.133 24 C -0.163 4.163 25 C 0.520 3.480 26 O -0.458 6.458 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.437 0.563 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.035 0.965 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.037 0.963 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.028 3.277 14.217 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 H 0.144 0.856 4 N -0.395 5.395 5 C 0.397 3.603 6 O -0.403 6.403 7 N -0.319 5.319 8 C -0.013 4.013 9 C -0.130 4.130 10 N -0.248 5.248 11 C 0.037 3.963 12 C -0.540 4.540 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.723 3.277 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.061 4.061 21 C -0.107 4.107 22 C -0.219 4.219 23 C -0.191 4.191 24 C -0.219 4.219 25 C 0.306 3.694 26 O -0.327 6.327 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.281 0.719 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.118 0.882 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.935 2.903 13.380 20.260 hybrid contribution 0.926 -0.166 0.212 0.965 sum -14.009 2.737 13.592 19.710 Atomic orbital electron populations 1.21956 0.90878 1.03810 1.04242 1.22081 0.97487 0.98151 0.84290 0.85621 1.45605 1.55472 1.29385 1.09010 1.15980 0.79856 0.82436 0.82045 1.91072 1.47482 1.40769 1.61019 1.46482 1.49065 1.28631 1.07687 1.22206 0.93893 0.89820 0.95354 1.23394 0.93252 0.97394 0.98914 1.62210 1.30324 1.02986 1.29297 1.20499 0.85821 0.94976 0.94972 1.21166 1.09458 1.10117 1.13238 0.92058 1.24940 0.96638 0.95352 0.97643 1.69951 1.18672 1.24584 1.40792 0.86554 0.77517 0.80712 0.82953 1.20766 1.21458 1.19919 1.22244 0.99498 0.93007 0.91344 1.21297 0.96074 0.95691 0.97618 1.23030 0.97440 1.02968 0.98495 1.21784 0.99867 0.97158 1.00256 1.22735 1.00178 0.98049 1.00959 1.20852 0.77682 0.80828 0.90005 1.90844 1.56507 1.68656 1.16650 0.91428 0.90455 0.89734 0.71858 0.87609 0.88282 0.91816 0.89591 0.95940 0.94808 0.93075 0.92876 0.89663 0.93794 0.93894 0.88239 0.92610 0.93622 0.93280 0.91197 0.94425 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.63 37.16 0.36 -0.44 16 2 C 0.09 0.66 4.32 -68.21 -0.29 0.37 16 3 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 4 N -0.73 -5.78 6.24 -59.20 -0.37 -6.15 16 5 C 0.70 8.61 8.41 -88.03 -0.74 7.87 16 6 O -0.53 -8.00 14.04 5.33 0.07 -7.93 16 7 N -0.57 -7.60 2.60 -120.73 -0.31 -7.92 16 8 C 0.11 1.67 4.93 -4.04 -0.02 1.65 16 9 C 0.00 -0.02 3.93 -3.82 -0.02 -0.03 16 10 N -0.52 -11.06 4.64 -236.07 -1.09 -12.16 16 11 C 0.16 4.09 4.17 -4.98 -0.02 4.07 16 12 C -0.50 -13.91 8.24 -34.44 -0.28 -14.20 16 13 H 0.06 1.70 7.51 -52.49 -0.39 1.31 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.07 1.29 4.60 -3.82 -0.02 1.28 16 21 C -0.11 -1.81 0.77 -154.51 -0.12 -1.93 16 22 C -0.16 -2.63 4.54 37.16 0.17 -2.47 16 23 C -0.13 -2.08 8.39 37.16 0.31 -1.77 16 24 C -0.16 -3.06 6.51 37.16 0.24 -2.82 16 25 C 0.52 6.42 7.65 -10.55 -0.08 6.34 16 26 O -0.46 -7.16 17.76 5.60 0.10 -7.06 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.44 2.28 8.96 -40.82 -0.37 1.91 16 31 H 0.11 1.61 4.79 -51.93 -0.25 1.36 16 32 H 0.10 1.60 8.00 -51.93 -0.42 1.18 16 33 H 0.06 1.25 7.77 -51.93 -0.40 0.85 16 34 H 0.09 1.56 2.23 -51.93 -0.12 1.45 16 35 H 0.02 0.63 7.81 -51.93 -0.41 0.23 16 36 H 0.03 0.88 3.43 -51.93 -0.18 0.70 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.05 0.93 7.57 -51.92 -0.39 0.54 16 39 H 0.08 1.82 6.60 -51.93 -0.34 1.47 16 40 H 0.04 0.69 7.70 -51.93 -0.40 0.29 16 41 H 0.04 0.71 8.13 -51.93 -0.42 0.28 16 42 H 0.10 1.61 0.78 -51.93 -0.04 1.57 16 43 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.36 4.00 -51.93 -0.21 1.16 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.08 1.82 6.07 -51.93 -0.32 1.51 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -32.29 355.77 -8.30 -40.60 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.17 Total: 4.92 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.61 Total: -0.63 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -1.04 Total: -52.03 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.17 Total: -14.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.29 -8.30 -40.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459336565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.055 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds