Wall clock time and date at job start Tue Mar 31 2020 11:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.53923 * 2 1 4 4 N 1.47313 * 110.59729 * 123.00267 * 2 1 3 5 5 C 1.34521 * 106.62361 * 118.52362 * 4 2 1 6 6 O 1.21538 * 123.77591 * 179.97438 * 5 4 2 7 7 N 1.33791 * 112.45574 * 359.74671 * 5 4 2 8 8 C 1.46505 * 124.18088 * 180.30903 * 7 5 4 9 9 C 1.53002 * 109.46700 * 270.14531 * 8 7 5 10 10 N 1.46903 * 109.46988 * 186.66672 * 9 8 7 11 11 C 1.46896 * 111.00306 * 163.87481 * 10 9 8 12 12 C 1.50696 * 109.47408 * 192.33619 * 11 10 9 13 13 H 1.07997 * 119.99878 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99993 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00296 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99945 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47311 * 89.99906 * 16 14 12 18 18 H 1.48508 * 109.46965 * 210.00007 * 16 14 12 19 19 H 1.48497 * 109.46931 * 329.99586 * 16 14 12 20 20 C 1.46902 * 111.00156 * 287.82866 * 10 9 8 21 21 C 1.53000 * 109.47206 * 318.39148 * 20 10 9 22 22 C 1.52995 * 109.47599 * 79.39958 * 21 20 10 23 23 C 1.52997 * 109.46780 * 199.40499 * 21 20 10 24 24 C 1.53004 * 109.46641 * 319.39916 * 21 20 10 25 25 C 1.34771 * 111.64498 * 0.43903 * 7 5 4 26 26 O 1.21232 * 127.15894 * 179.86020 * 25 7 5 27 27 H 1.08993 * 109.47859 * 182.82999 * 1 2 3 28 28 H 1.08999 * 109.46991 * 302.82900 * 1 2 3 29 29 H 1.08997 * 109.47112 * 62.82290 * 1 2 3 30 30 H 0.97007 * 126.68890 * 298.53810 * 4 2 1 31 31 H 1.08994 * 109.46977 * 30.14127 * 8 7 5 32 32 H 1.08995 * 109.47456 * 150.14534 * 8 7 5 33 33 H 1.08997 * 109.47601 * 306.66362 * 9 8 7 34 34 H 1.08996 * 109.47182 * 66.67159 * 9 8 7 35 35 H 1.09004 * 109.47103 * 312.33713 * 11 10 9 36 36 H 1.09006 * 109.47222 * 72.33302 * 11 10 9 37 37 H 0.96999 * 120.00201 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.46506 * 78.38685 * 20 10 9 39 39 H 1.08992 * 109.47290 * 198.38298 * 20 10 9 40 40 H 1.09004 * 109.47101 * 59.96599 * 22 21 20 41 41 H 1.08999 * 109.47197 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.47030 * 299.96895 * 22 21 20 43 43 H 1.09001 * 109.47817 * 59.99872 * 23 21 20 44 44 H 1.09006 * 109.46829 * 179.97438 * 23 21 20 45 45 H 1.08996 * 109.47272 * 299.99143 * 23 21 20 46 46 H 1.08997 * 109.47127 * 65.79634 * 24 21 20 47 47 H 1.09003 * 109.46840 * 185.79922 * 24 21 20 48 48 H 1.09000 * 109.47133 * 305.79597 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 7 2.0482 -0.7511 1.1565 5 6 2.7598 -1.7791 0.6601 6 8 3.3289 -2.6023 1.3498 7 7 2.7669 -1.7970 -0.6777 8 6 3.4569 -2.8073 -1.4836 9 6 4.8877 -2.3445 -1.7657 10 7 5.5281 -3.2766 -2.7032 11 6 6.7360 -2.6839 -3.2926 12 6 7.1925 -3.5258 -4.4561 13 1 6.6407 -4.4128 -4.7301 14 6 8.3152 -3.1643 -5.1701 15 7 8.9874 -2.0844 -4.8362 16 14 8.8806 -4.2075 -6.6128 17 1 8.2354 -3.7208 -7.8586 18 1 10.3561 -4.1075 -6.7478 19 1 8.4998 -5.6236 -6.3789 20 6 5.8351 -4.5549 -2.0476 21 6 6.3850 -4.2894 -0.6448 22 6 5.2270 -3.9866 0.3082 23 6 7.1419 -5.5242 -0.1517 24 6 7.3362 -3.0918 -0.6882 25 6 2.0632 -0.7692 -1.1923 26 8 1.8886 -0.5158 -2.3649 27 1 -0.3634 -1.0263 0.0507 28 1 -0.3633 0.5571 0.8635 29 1 -0.3633 0.4694 -0.9142 30 1 1.9042 -0.5447 2.0933 31 1 3.4811 -3.7515 -0.9398 32 1 2.9270 -2.9443 -2.4262 33 1 4.8673 -1.3463 -2.2029 34 1 5.4525 -2.3214 -0.8337 35 1 6.5134 -1.6748 -3.6395 36 1 7.5249 -2.6440 -2.5413 37 1 9.7775 -1.8302 -5.3383 38 1 4.9267 -5.1531 -1.9746 39 1 6.5792 -5.0943 -2.6336 40 1 4.5490 -4.8396 0.3387 41 1 5.6189 -3.7979 1.3077 42 1 4.6882 -3.1065 -0.0428 43 1 7.9670 -5.7399 -0.8305 44 1 7.5341 -5.3349 0.8476 45 1 6.4643 -6.3774 -0.1207 46 1 6.7757 -2.1915 -0.9400 47 1 7.8068 -2.9660 0.2870 48 1 8.1039 -3.2647 -1.4424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459336565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:00 Heat of formation + Delta-G solvation = 2.701144 kcal Electronic energy + Delta-G solvation = -28337.402013 eV Core-core repulsion = 24623.350785 eV Total energy + Delta-G solvation = -3714.051228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.55554 -41.18217 -39.66400 -37.33588 -36.36313 -35.56532 -34.21188 -31.83808 -31.17162 -29.27328 -28.32419 -27.77732 -26.67652 -25.63326 -24.46208 -23.18868 -22.02260 -21.32491 -19.87893 -19.07404 -18.52458 -18.10344 -17.34208 -17.10453 -16.88913 -16.50260 -16.45368 -15.89855 -15.58124 -15.35911 -15.22292 -15.12722 -14.60590 -14.33258 -14.11364 -13.95974 -13.50016 -13.36847 -13.15090 -12.92950 -12.87170 -12.75066 -12.63096 -12.47682 -12.40786 -12.29665 -12.08474 -12.01786 -11.75222 -11.64183 -11.41217 -11.24560 -11.12288 -10.78669 -10.73448 -10.50713 -10.38084 -8.67352 -8.14163 -6.21905 0.60904 1.18726 1.40857 1.42054 1.52659 1.96519 2.22158 2.42602 2.96164 3.17320 3.38831 3.69045 3.88000 3.91030 3.99156 4.04681 4.06334 4.10029 4.36842 4.42075 4.43682 4.59621 4.66712 4.72866 4.75401 4.80345 4.85452 4.89666 4.92655 4.95432 5.01293 5.10694 5.12965 5.22302 5.29013 5.34013 5.39626 5.47507 5.55648 5.61138 5.71274 5.90777 6.07293 6.13890 6.38537 6.43167 6.67481 6.93147 7.16107 7.45145 8.95249 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.004209 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.393818 B = 6650.801349 C = 7756.459266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.102 3.898 3 H 0.157 0.843 4 N -0.703 5.703 5 C 0.692 3.308 6 O -0.559 6.559 7 N -0.579 5.579 8 C 0.120 3.880 9 C 0.008 3.992 10 N -0.534 5.534 11 C 0.175 3.825 12 C -0.515 4.515 13 H 0.058 0.942 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.961 3.039 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.070 3.930 21 C -0.101 4.101 22 C -0.152 4.152 23 C -0.129 4.129 24 C -0.155 4.155 25 C 0.511 3.489 26 O -0.499 6.499 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.454 0.546 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.093 0.907 35 H -0.016 1.016 36 H 0.030 0.970 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 2.957 15.956 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.006 4.006 3 H 0.175 0.825 4 N -0.370 5.370 5 C 0.392 3.608 6 O -0.434 6.434 7 N -0.325 5.325 8 C -0.002 4.002 9 C -0.120 4.120 10 N -0.257 5.257 11 C 0.050 3.950 12 C -0.554 4.554 13 H 0.076 0.924 14 C -0.194 4.194 15 N -0.575 5.575 16 Si 0.787 3.213 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.058 4.058 21 C -0.103 4.103 22 C -0.208 4.208 23 C -0.187 4.187 24 C -0.211 4.211 25 C 0.299 3.701 26 O -0.371 6.371 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.302 0.698 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.002 0.998 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.115 0.885 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.529 2.605 15.171 22.586 hybrid contribution 1.367 -0.012 -0.296 1.399 sum -15.161 2.593 14.875 21.397 Atomic orbital electron populations 1.21985 0.88530 1.03989 1.05786 1.22247 0.98936 0.98194 0.81181 0.82548 1.45493 1.53773 1.27675 1.10009 1.16079 0.80203 0.83110 0.81382 1.91045 1.48956 1.42127 1.61299 1.46516 1.49043 1.28632 1.08303 1.21840 0.91986 0.90765 0.95583 1.23338 0.94948 0.95703 0.98040 1.62087 1.28472 1.04079 1.31099 1.20190 0.87345 0.92844 0.94649 1.21468 1.09652 1.10179 1.14056 0.92428 1.25780 0.96732 0.96519 1.00362 1.70075 1.19140 1.26155 1.42101 0.85500 0.77120 0.79346 0.79354 1.20367 1.20857 1.18915 1.22231 0.99847 0.91766 0.91926 1.21254 0.96388 0.95815 0.96828 1.22906 0.96760 1.03253 0.97864 1.21745 0.99646 0.96765 1.00524 1.22583 0.99501 0.98378 1.00617 1.21753 0.76870 0.80610 0.90834 1.90821 1.57920 1.69577 1.18734 0.92169 0.87161 0.89714 0.69825 0.86905 0.89314 0.94158 0.89050 0.99814 0.95276 0.92949 0.90742 0.92145 0.92782 0.93777 0.88491 0.93838 0.92245 0.91505 0.92429 0.92642 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.63 71.98 0.69 -0.36 16 2 C 0.10 1.24 4.32 44.37 0.19 1.43 16 3 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 4 N -0.70 -9.05 6.24 -459.62 -2.87 -11.92 16 5 C 0.69 15.90 8.41 179.44 1.51 17.41 16 6 O -0.56 -15.87 14.04 -3.84 -0.05 -15.92 16 7 N -0.58 -15.03 2.60 -773.12 -2.01 -17.05 16 8 C 0.12 3.73 4.93 86.38 0.43 4.16 16 9 C 0.01 0.30 3.93 86.30 0.34 0.64 16 10 N -0.53 -23.36 4.64 -900.79 -4.18 -27.54 16 11 C 0.18 9.36 4.17 85.56 0.36 9.71 16 12 C -0.51 -29.59 8.24 25.60 0.21 -29.38 16 13 H 0.06 3.28 7.51 -2.91 -0.02 3.26 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 16 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 20 C 0.07 2.72 4.60 86.30 0.40 3.11 16 21 C -0.10 -3.44 0.77 -52.18 -0.04 -3.48 16 22 C -0.15 -4.66 4.54 71.98 0.33 -4.33 16 23 C -0.13 -3.85 8.39 71.98 0.60 -3.25 16 24 C -0.15 -5.91 6.51 71.98 0.47 -5.44 16 25 C 0.51 12.24 7.65 87.94 0.67 12.92 16 26 O -0.50 -15.85 17.76 -2.88 -0.05 -15.90 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.45 3.04 8.96 -92.70 -0.83 2.21 16 31 H 0.11 3.34 4.79 -2.39 -0.01 3.33 16 32 H 0.09 2.94 8.00 -2.39 -0.02 2.92 16 33 H 0.04 1.68 7.77 -2.39 -0.02 1.66 16 34 H 0.09 3.38 2.23 -2.39 -0.01 3.37 16 35 H -0.02 -0.98 7.81 -2.39 -0.02 -1.00 16 36 H 0.03 1.62 3.43 -2.38 -0.01 1.61 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.07 2.55 7.57 -2.38 -0.02 2.53 16 39 H 0.06 2.63 6.60 -2.39 -0.02 2.62 16 40 H 0.05 1.56 7.70 -2.39 -0.02 1.54 16 41 H 0.04 1.35 8.13 -2.39 -0.02 1.33 16 42 H 0.10 3.05 0.78 -2.38 0.00 3.05 16 43 H 0.04 1.39 8.13 -2.39 -0.02 1.37 16 44 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 2.33 4.00 -2.39 -0.01 2.32 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.05 2.24 6.07 -2.39 -0.01 2.22 16 Total: -1.00 -73.05 355.77 -0.07 -73.13 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.16 Total: 20.49 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 6.62 Total: 3.81 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -8.78 Total: -112.97 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.11 Total: -31.82 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -73.05 -0.07 -73.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459336565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.826 kcal (2) G-P(sol) polarization free energy of solvation -73.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds