Wall clock time and date at job start Tue Mar 31 2020 11:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47187 * 2 1 4 4 C 1.50692 * 109.47348 * 120.00483 * 2 1 3 5 5 H 1.08004 * 119.99839 * 119.99440 * 4 2 1 6 6 C 1.37881 * 120.00297 * 299.99993 * 4 2 1 7 7 N 1.31516 * 119.99310 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00462 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46783 * 59.99713 * 8 6 4 10 10 H 1.48491 * 109.47203 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47224 * 300.00319 * 8 6 4 12 12 N 1.46502 * 109.46590 * 240.00750 * 2 1 3 13 13 N 1.40094 * 120.00467 * 90.00303 * 12 2 1 14 14 C 1.28004 * 120.00284 * 179.97438 * 13 12 2 15 15 C 1.52381 * 126.28222 * 0.03574 * 14 13 12 16 16 C 1.54890 * 104.17928 * 156.22119 * 15 14 13 17 17 C 1.54981 * 102.51257 * 37.60738 * 16 15 14 18 18 C 1.51453 * 126.34420 * 180.02562 * 14 13 12 19 19 H 1.09004 * 109.97709 * 299.72810 * 18 14 13 20 20 N 1.46498 * 109.98377 * 61.02902 * 18 14 13 21 21 C 1.34782 * 119.99832 * 272.41481 * 20 18 14 22 22 O 1.21505 * 120.00045 * 0.02562 * 21 20 18 23 23 O 1.34631 * 119.99540 * 179.97438 * 21 20 18 24 24 C 1.45208 * 116.99836 * 180.02562 * 23 21 20 25 25 C 1.52990 * 109.46864 * 60.00295 * 24 23 21 26 26 C 1.53000 * 109.47249 * 180.02562 * 24 23 21 27 27 C 1.53002 * 109.46939 * 300.00097 * 24 23 21 28 28 H 1.09004 * 109.47024 * 59.99500 * 1 2 3 29 29 H 1.08992 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46655 * 299.99827 * 1 2 3 31 31 H 0.97006 * 119.99568 * 180.02562 * 7 6 4 32 32 H 0.97005 * 119.99816 * 269.99582 * 12 2 1 33 33 H 1.09003 * 110.66045 * 37.51586 * 15 14 13 34 34 H 1.08993 * 110.46011 * 274.83148 * 15 14 13 35 35 H 1.09002 * 110.83553 * 279.29450 * 16 15 14 36 36 H 1.09000 * 110.83007 * 155.91744 * 16 15 14 37 37 H 1.08993 * 110.57490 * 81.38232 * 17 16 15 38 38 H 1.09001 * 110.56547 * 204.24513 * 17 16 15 39 39 H 0.97002 * 119.99771 * 92.41877 * 20 18 14 40 40 H 1.09001 * 109.47632 * 60.00365 * 25 24 23 41 41 H 1.09007 * 109.47394 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.47811 * 300.00017 * 25 24 23 43 43 H 1.09004 * 109.47288 * 59.99956 * 26 24 23 44 44 H 1.08998 * 109.47193 * 179.97438 * 26 24 23 45 45 H 1.09003 * 109.46689 * 299.99926 * 26 24 23 46 46 H 1.09005 * 109.46517 * 60.00147 * 27 24 23 47 47 H 1.08997 * 109.46669 * 179.97438 * 27 24 23 48 48 H 1.08995 * 109.47205 * 300.00075 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8066 -1.1212 4.0079 10 1 1.8271 -0.4203 5.2203 11 1 1.8260 -2.5205 4.0075 12 7 2.0183 -0.6905 -1.1963 13 7 2.2518 0.0301 -2.3748 14 6 2.6788 -0.5732 -3.4199 15 6 2.9791 -2.0621 -3.5422 16 6 2.8530 -2.3513 -5.0587 17 6 3.4541 -1.0726 -5.6955 18 6 2.9786 0.0604 -4.7625 19 1 2.0772 0.5217 -5.1662 20 7 4.0341 1.0659 -4.6171 21 6 3.7156 2.3357 -4.2966 22 8 2.5531 2.6464 -4.1278 23 8 4.6857 3.2596 -4.1625 24 6 4.2695 4.6068 -3.8155 25 6 3.5353 4.5838 -2.4734 26 6 5.5005 5.5092 -3.7086 27 6 3.3344 5.1468 -4.8994 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.7097 1.1616 3.4845 32 1 2.1799 -1.6467 -1.1724 33 1 2.2516 -2.6485 -2.9810 34 1 3.9903 -2.2765 -3.1965 35 1 1.8082 -2.4724 -5.3447 36 1 3.4333 -3.2316 -5.3350 37 1 4.5426 -1.1263 -5.7081 38 1 3.0652 -0.9276 -6.7034 39 1 4.9621 0.8177 -4.7516 40 1 4.2015 4.1991 -1.7012 41 1 3.2233 5.5952 -2.2126 42 1 2.6584 3.9411 -2.5499 43 1 6.0232 5.5254 -4.6649 44 1 5.1881 6.5205 -3.4485 45 1 6.1670 5.1245 -2.9366 46 1 2.4574 4.5039 -4.9758 47 1 3.0217 6.1579 -4.6386 48 1 3.8575 5.1631 -5.8554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494482706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:29 Heat of formation + Delta-G solvation = -54.559862 kcal Electronic energy + Delta-G solvation = -27126.125501 eV Core-core repulsion = 23409.591249 eV Total energy + Delta-G solvation = -3716.534252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52764 -38.70549 -36.67635 -35.62563 -34.13495 -33.52523 -33.02213 -30.94018 -27.84946 -27.46290 -27.36596 -27.18950 -25.25710 -24.64471 -22.24866 -21.18177 -20.20045 -19.73448 -18.65632 -17.95499 -17.01255 -16.47283 -15.87598 -15.77054 -15.49588 -14.93583 -14.46858 -14.18090 -14.17462 -13.55830 -13.31161 -13.14798 -12.83378 -12.54776 -12.47285 -12.35947 -12.12802 -11.92378 -11.81980 -11.70825 -11.60129 -11.27239 -11.18596 -11.13793 -11.11323 -10.97605 -10.80131 -10.73366 -10.33051 -10.18812 -10.16462 -10.01260 -9.72176 -9.45444 -9.00358 -8.68177 -8.46083 -6.84372 -6.08379 -4.16516 2.29486 3.10495 3.22037 3.27507 3.32096 3.33760 3.82156 4.34743 4.39432 4.66405 4.81674 4.85221 4.86328 4.99454 5.01383 5.23343 5.30483 5.45176 5.48823 5.55518 5.60640 5.65508 5.70271 5.73050 5.82284 5.85504 5.91578 6.00604 6.05327 6.08234 6.24478 6.31134 6.35546 6.54565 6.69819 6.76936 6.84070 7.08886 7.13924 7.25090 7.64291 7.67672 7.87766 7.94752 8.24785 8.40654 8.71729 8.92340 9.49205 9.53366 10.97410 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.004340 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.303463 B = 6450.134884 C = 8345.563537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.301 3.699 3 H 0.039 0.961 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.631 5.631 13 N -0.165 5.165 14 C -0.041 4.041 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.123 4.123 18 C 0.232 3.768 19 H 0.098 0.902 20 N -0.702 5.702 21 C 0.650 3.350 22 O -0.549 6.549 23 O -0.371 6.371 24 C 0.138 3.862 25 C -0.184 4.184 26 C -0.139 4.139 27 C -0.182 4.182 28 H 0.012 0.988 29 H 0.024 0.976 30 H 0.088 0.912 31 H 0.264 0.736 32 H 0.366 0.634 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.400 0.600 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.067 0.933 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 1.957 -17.618 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.198 3.802 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.368 5.368 13 N 0.025 4.975 14 C -0.236 4.236 15 C -0.149 4.149 16 C -0.152 4.152 17 C -0.161 4.161 18 C 0.127 3.873 19 H 0.116 0.884 20 N -0.362 5.362 21 C 0.403 3.597 22 O -0.436 6.436 23 O -0.286 6.286 24 C 0.102 3.898 25 C -0.241 4.241 26 C -0.197 4.197 27 C -0.239 4.239 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.202 0.798 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.235 0.765 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.086 0.914 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.892 3.373 -16.824 18.491 hybrid contribution 0.944 -1.712 0.855 2.134 sum 7.836 1.661 -15.969 17.865 Atomic orbital electron populations 1.22188 0.99220 0.98948 1.00460 1.18443 0.89997 0.93398 0.78321 0.94342 1.21203 1.32128 1.13160 0.90323 0.92435 1.24854 0.94891 0.95013 0.98860 1.69898 1.36051 1.22499 1.23873 0.86512 0.79132 0.79609 0.81852 1.20257 1.21091 1.20206 1.48914 1.73667 1.07556 1.06698 1.73409 1.04111 1.26627 0.93357 1.24732 1.09925 0.93431 0.95529 1.21711 1.01565 0.94982 0.96649 1.22332 1.01252 0.96710 0.94858 1.22595 1.01243 0.93984 0.98293 1.20048 0.90098 0.86282 0.90893 0.88397 1.44835 1.10855 1.06037 1.74444 1.18056 0.83417 0.81698 0.76530 1.90931 1.18688 1.79913 1.54076 1.86251 1.38576 1.20372 1.83430 1.22001 0.95140 0.77251 0.95457 1.22510 1.02975 1.03510 0.95142 1.21849 0.96608 0.98324 1.02888 1.22506 1.01344 1.02350 0.97680 0.96866 0.95729 0.89344 0.92590 0.79783 0.91512 0.90953 0.90942 0.91056 0.90548 0.90272 0.76545 0.92080 0.91518 0.88730 0.91826 0.90339 0.91516 0.89237 0.91384 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.29 37.16 0.35 -3.52 16 2 C 0.30 8.05 3.23 -69.08 -0.22 7.82 16 3 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.53 -14.65 8.74 -34.44 -0.30 -14.95 16 5 H 0.06 1.55 7.79 -52.48 -0.41 1.15 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.63 -14.66 6.06 -5.88 -0.04 -14.69 16 13 N -0.17 -3.58 11.50 36.19 0.42 -3.17 16 14 C -0.04 -0.69 7.09 -77.71 -0.55 -1.24 16 15 C -0.11 -1.46 5.96 -26.05 -0.16 -1.61 16 16 C -0.11 -1.09 6.93 -24.69 -0.17 -1.27 16 17 C -0.12 -1.12 6.57 -25.02 -0.16 -1.28 16 18 C 0.23 3.15 3.17 -68.04 -0.22 2.93 16 19 H 0.10 1.46 7.57 -51.93 -0.39 1.07 16 20 N -0.70 -9.57 5.10 -58.84 -0.30 -9.87 16 21 C 0.65 10.68 8.05 54.06 0.43 11.12 16 22 O -0.55 -10.56 11.54 -19.28 -0.22 -10.78 16 23 O -0.37 -5.59 9.94 -40.30 -0.40 -5.99 16 24 C 0.14 1.85 1.13 -90.62 -0.10 1.75 16 25 C -0.18 -2.83 8.37 37.15 0.31 -2.52 16 26 C -0.14 -1.42 8.85 37.16 0.33 -1.09 16 27 C -0.18 -2.23 8.37 37.16 0.31 -1.92 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 32 H 0.37 7.90 7.16 -182.60 -1.31 6.59 16 33 H 0.07 0.95 7.36 -51.93 -0.38 0.57 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.58 7.73 -51.93 -0.40 0.18 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 4.35 8.47 -40.82 -0.35 4.01 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.79 5.88 -51.93 -0.31 1.49 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -31.91 383.57 -8.62 -40.53 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -9.22 Total: 10.78 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.25 Total: -4.03 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.71 Total: -52.47 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.62 Total: -16.78 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.91 -8.62 -40.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494482706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.032 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds