Wall clock time and date at job start Tue Mar 31 2020 11:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47187 * 2 1 4 4 C 1.50692 * 109.47348 * 120.00483 * 2 1 3 5 5 H 1.08004 * 119.99839 * 119.99440 * 4 2 1 6 6 C 1.37881 * 120.00297 * 299.99993 * 4 2 1 7 7 N 1.31516 * 119.99310 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00462 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46783 * 59.99713 * 8 6 4 10 10 H 1.48491 * 109.47203 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47224 * 300.00319 * 8 6 4 12 12 N 1.46502 * 109.46590 * 240.00750 * 2 1 3 13 13 N 1.40094 * 120.00467 * 90.00303 * 12 2 1 14 14 C 1.28004 * 120.00284 * 179.97438 * 13 12 2 15 15 C 1.52381 * 126.28222 * 0.03574 * 14 13 12 16 16 C 1.54890 * 104.17928 * 156.22119 * 15 14 13 17 17 C 1.54981 * 102.51257 * 37.60738 * 16 15 14 18 18 C 1.51453 * 126.34420 * 180.02562 * 14 13 12 19 19 H 1.09004 * 109.97709 * 299.72810 * 18 14 13 20 20 N 1.46498 * 109.98377 * 61.02902 * 18 14 13 21 21 C 1.34782 * 119.99832 * 272.41481 * 20 18 14 22 22 O 1.21505 * 120.00045 * 0.02562 * 21 20 18 23 23 O 1.34631 * 119.99540 * 179.97438 * 21 20 18 24 24 C 1.45208 * 116.99836 * 180.02562 * 23 21 20 25 25 C 1.52990 * 109.46864 * 60.00295 * 24 23 21 26 26 C 1.53000 * 109.47249 * 180.02562 * 24 23 21 27 27 C 1.53002 * 109.46939 * 300.00097 * 24 23 21 28 28 H 1.09004 * 109.47024 * 59.99500 * 1 2 3 29 29 H 1.08992 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46655 * 299.99827 * 1 2 3 31 31 H 0.97006 * 119.99568 * 180.02562 * 7 6 4 32 32 H 0.97005 * 119.99816 * 269.99582 * 12 2 1 33 33 H 1.09003 * 110.66045 * 37.51586 * 15 14 13 34 34 H 1.08993 * 110.46011 * 274.83148 * 15 14 13 35 35 H 1.09002 * 110.83553 * 279.29450 * 16 15 14 36 36 H 1.09000 * 110.83007 * 155.91744 * 16 15 14 37 37 H 1.08993 * 110.57490 * 81.38232 * 17 16 15 38 38 H 1.09001 * 110.56547 * 204.24513 * 17 16 15 39 39 H 0.97002 * 119.99771 * 92.41877 * 20 18 14 40 40 H 1.09001 * 109.47632 * 60.00365 * 25 24 23 41 41 H 1.09007 * 109.47394 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.47811 * 300.00017 * 25 24 23 43 43 H 1.09004 * 109.47288 * 59.99956 * 26 24 23 44 44 H 1.08998 * 109.47193 * 179.97438 * 26 24 23 45 45 H 1.09003 * 109.46689 * 299.99926 * 26 24 23 46 46 H 1.09005 * 109.46517 * 60.00147 * 27 24 23 47 47 H 1.08997 * 109.46669 * 179.97438 * 27 24 23 48 48 H 1.08995 * 109.47205 * 300.00075 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8066 -1.1212 4.0079 10 1 1.8271 -0.4203 5.2203 11 1 1.8260 -2.5205 4.0075 12 7 2.0183 -0.6905 -1.1963 13 7 2.2518 0.0301 -2.3748 14 6 2.6788 -0.5732 -3.4199 15 6 2.9791 -2.0621 -3.5422 16 6 2.8530 -2.3513 -5.0587 17 6 3.4541 -1.0726 -5.6955 18 6 2.9786 0.0604 -4.7625 19 1 2.0772 0.5217 -5.1662 20 7 4.0341 1.0659 -4.6171 21 6 3.7156 2.3357 -4.2966 22 8 2.5531 2.6464 -4.1278 23 8 4.6857 3.2596 -4.1625 24 6 4.2695 4.6068 -3.8155 25 6 3.5353 4.5838 -2.4734 26 6 5.5005 5.5092 -3.7086 27 6 3.3344 5.1468 -4.8994 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.7097 1.1616 3.4845 32 1 2.1799 -1.6467 -1.1724 33 1 2.2516 -2.6485 -2.9810 34 1 3.9903 -2.2765 -3.1965 35 1 1.8082 -2.4724 -5.3447 36 1 3.4333 -3.2316 -5.3350 37 1 4.5426 -1.1263 -5.7081 38 1 3.0652 -0.9276 -6.7034 39 1 4.9621 0.8177 -4.7516 40 1 4.2015 4.1991 -1.7012 41 1 3.2233 5.5952 -2.2126 42 1 2.6584 3.9411 -2.5499 43 1 6.0232 5.5254 -4.6649 44 1 5.1881 6.5205 -3.4485 45 1 6.1670 5.1245 -2.9366 46 1 2.4574 4.5039 -4.9758 47 1 3.0217 6.1579 -4.6386 48 1 3.8575 5.1631 -5.8554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494482706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:28 Heat of formation + Delta-G solvation = -76.647162 kcal Electronic energy + Delta-G solvation = -27127.083278 eV Core-core repulsion = 23409.591249 eV Total energy + Delta-G solvation = -3717.492029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.75112 -39.88975 -38.02250 -37.23765 -35.53421 -35.12315 -34.17003 -32.85323 -29.23818 -28.83523 -28.36126 -28.27007 -27.35769 -26.01734 -23.45712 -22.58806 -21.76056 -20.85620 -20.17455 -19.18357 -18.64442 -17.74256 -17.41095 -17.03094 -16.92885 -16.58513 -15.75224 -15.53129 -15.27164 -15.12880 -14.64765 -14.38681 -14.29968 -13.99791 -13.77814 -13.51786 -13.33243 -13.17842 -13.09254 -12.89303 -12.87493 -12.82402 -12.74002 -12.65472 -12.43946 -12.31896 -12.23132 -12.14792 -11.97210 -11.77191 -11.55894 -11.33722 -11.15133 -11.01111 -10.80996 -10.59761 -9.99280 -8.59465 -8.19213 -6.37459 1.09355 1.39561 1.42513 1.50512 1.74340 1.89962 2.21507 2.46641 3.08837 3.27332 3.66632 3.77985 3.81086 3.83914 3.96552 4.08248 4.21163 4.42427 4.49598 4.55923 4.61858 4.69640 4.72721 4.76504 4.77068 4.83718 4.88439 4.90022 4.92933 5.02703 5.09359 5.12672 5.18801 5.22822 5.30406 5.31027 5.37567 5.41147 5.50468 5.54921 5.66719 5.77620 5.88801 6.21494 6.43228 6.51768 6.84775 7.34582 7.49676 7.93676 8.85980 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.004340 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.303463 B = 6450.134884 C = 8345.563537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.313 3.687 3 H -0.013 1.013 4 C -0.547 4.547 5 H 0.061 0.939 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.265 1.265 12 N -0.647 5.647 13 N -0.231 5.231 14 C -0.014 4.014 15 C -0.113 4.113 16 C -0.102 4.102 17 C -0.107 4.107 18 C 0.226 3.774 19 H 0.082 0.918 20 N -0.690 5.690 21 C 0.641 3.359 22 O -0.583 6.583 23 O -0.371 6.371 24 C 0.129 3.871 25 C -0.181 4.181 26 C -0.133 4.133 27 C -0.175 4.175 28 H 0.009 0.991 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.267 0.733 32 H 0.370 0.630 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.416 0.584 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.070 0.714 -19.567 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.209 3.791 3 H 0.005 0.995 4 C -0.586 4.586 5 H 0.079 0.921 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.190 1.190 12 N -0.385 5.385 13 N -0.038 5.038 14 C -0.211 4.211 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.145 4.145 18 C 0.120 3.880 19 H 0.100 0.900 20 N -0.351 5.351 21 C 0.394 3.606 22 O -0.472 6.472 23 O -0.286 6.286 24 C 0.093 3.907 25 C -0.238 4.238 26 C -0.190 4.190 27 C -0.232 4.232 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.207 0.793 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.253 0.747 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.107 0.893 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.080 2.114 -18.799 20.984 hybrid contribution 0.307 -1.286 1.284 1.843 sum 9.386 0.828 -17.516 19.889 Atomic orbital electron populations 1.21990 0.99172 0.98843 0.99152 1.17974 0.89978 0.90999 0.80145 0.99521 1.21472 1.32573 1.13453 0.91121 0.92113 1.25775 0.94823 0.95632 1.02059 1.70042 1.36882 1.23795 1.24711 0.85388 0.78553 0.78714 0.77605 1.19762 1.20515 1.19006 1.48353 1.75960 1.07334 1.06835 1.73497 1.08382 1.27757 0.94195 1.25824 1.03989 0.96209 0.95067 1.21867 1.01745 0.91823 0.99966 1.22354 1.02274 0.98203 0.91232 1.22644 1.02868 0.90910 0.98076 1.20394 0.90252 0.87603 0.89749 0.89978 1.44767 1.11784 1.05063 1.73437 1.18401 0.83230 0.82623 0.76319 1.90930 1.20222 1.80637 1.55431 1.86262 1.38137 1.21042 1.83190 1.22321 0.96935 0.77121 0.94339 1.22457 1.01168 1.03729 0.96462 1.21867 0.94912 0.98378 1.03809 1.22431 0.99993 1.02627 0.98151 0.97222 0.94987 0.91388 0.92413 0.79257 0.92553 0.89801 0.90719 0.87751 0.87992 0.87489 0.74665 0.93689 0.89255 0.92965 0.90082 0.88090 0.91920 0.92312 0.89346 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.26 9.29 71.98 0.67 -6.59 16 2 C 0.31 17.82 3.23 44.24 0.14 17.97 16 3 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 4 C -0.55 -31.39 8.74 25.60 0.22 -31.16 16 5 H 0.06 3.35 7.79 -2.91 -0.02 3.33 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -54.39 11.32 21.45 0.24 -54.15 16 8 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 N -0.65 -31.68 6.06 -172.53 -1.05 -32.73 16 13 N -0.23 -10.56 11.50 -39.33 -0.45 -11.01 16 14 C -0.01 -0.48 7.09 47.31 0.34 -0.14 16 15 C -0.11 -2.85 5.96 31.04 0.18 -2.66 16 16 C -0.10 -1.57 6.93 31.92 0.22 -1.35 16 17 C -0.11 -1.50 6.57 31.71 0.21 -1.29 16 18 C 0.23 5.86 3.17 44.92 0.14 6.00 16 19 H 0.08 2.45 7.57 -2.38 -0.02 2.43 16 20 N -0.69 -18.23 5.10 -570.48 -2.91 -21.15 16 21 C 0.64 21.54 8.05 129.79 1.04 22.59 16 22 O -0.58 -23.76 11.54 19.83 0.23 -23.54 16 23 O -0.37 -11.20 9.94 -55.40 -0.55 -11.75 16 24 C 0.13 3.44 1.13 -10.80 -0.01 3.43 16 25 C -0.18 -5.87 8.37 71.98 0.60 -5.27 16 26 C -0.13 -2.44 8.85 71.98 0.64 -1.80 16 27 C -0.17 -4.20 8.37 71.98 0.60 -3.60 16 28 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 31 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 32 H 0.37 16.64 7.16 -213.32 -1.53 15.11 16 33 H 0.06 1.57 7.36 -2.39 -0.02 1.55 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.00 7.73 -2.39 -0.02 0.98 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.42 8.20 8.47 -92.71 -0.78 7.42 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 41 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.05 2.16 5.88 -2.39 -0.01 2.14 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 1.81 5.88 -2.38 -0.01 1.79 16 47 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -76.04 383.57 1.64 -74.40 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -1.35 Total: 36.43 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.45 Total: -2.46 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -4.17 Total: -119.03 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.32 Total: -35.29 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -76.04 1.64 -74.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494482706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.245 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds