Wall clock time and date at job start Tue Mar 31 2020 09:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47091 * 2 1 4 4 N 1.46495 * 109.46991 * 179.97438 * 3 2 1 5 5 C 1.34778 * 120.00129 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99771 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00310 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.47412 * 179.97438 * 7 5 4 9 9 N 1.46495 * 109.47231 * 179.97438 * 8 7 5 10 10 C 1.34784 * 119.99802 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99909 * 355.02087 * 10 9 8 12 12 N 1.34774 * 119.99579 * 175.01574 * 10 9 8 13 13 C 1.46930 * 120.62594 * 184.94940 * 12 10 9 14 14 C 1.52767 * 109.00782 * 233.58299 * 13 12 10 15 15 C 1.53032 * 109.38339 * 305.58995 * 14 13 12 16 16 C 1.50707 * 109.44938 * 181.25043 * 15 14 13 17 17 H 1.07995 * 120.00109 * 239.94425 * 16 15 14 18 18 C 1.37881 * 119.99688 * 59.93740 * 16 15 14 19 19 N 1.31517 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99781 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47079 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47080 * 120.00515 * 20 18 16 23 23 H 1.48500 * 109.46956 * 239.99957 * 20 18 16 24 24 C 1.53043 * 109.54075 * 61.24387 * 15 14 13 25 25 C 1.46924 * 120.63429 * 5.23244 * 12 10 9 26 26 H 1.09001 * 109.46895 * 60.00061 * 1 2 3 27 27 H 1.08997 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47592 * 300.00359 * 1 2 3 29 29 H 1.08999 * 109.47007 * 239.99927 * 2 1 3 30 30 H 1.09001 * 109.46895 * 119.99939 * 2 1 3 31 31 H 1.09000 * 109.46872 * 59.99704 * 3 2 1 32 32 H 1.08997 * 109.46489 * 299.99808 * 3 2 1 33 33 H 0.97001 * 120.00457 * 0.02562 * 4 3 2 34 34 H 1.09006 * 109.47413 * 59.99698 * 7 5 4 35 35 H 1.09003 * 109.47486 * 299.99875 * 7 5 4 36 36 H 1.09001 * 109.47084 * 299.99996 * 8 7 5 37 37 H 1.09000 * 109.46749 * 59.99803 * 8 7 5 38 38 H 0.97001 * 120.00457 * 0.02562 * 9 8 7 39 39 H 1.08993 * 109.58889 * 353.42310 * 13 12 10 40 40 H 1.09001 * 109.58692 * 113.85050 * 13 12 10 41 41 H 1.08993 * 109.56435 * 185.55251 * 14 13 12 42 42 H 1.09005 * 109.38001 * 65.52056 * 14 13 12 43 43 H 1.08995 * 109.46367 * 301.21499 * 15 14 13 44 44 H 0.97002 * 120.00033 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.50039 * 178.68018 * 24 15 14 46 46 H 1.08993 * 109.52537 * 58.59429 * 24 15 14 47 47 H 1.08998 * 109.58805 * 246.15013 * 25 12 10 48 48 H 1.09000 * 109.58747 * 6.43515 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6600 -0.0002 7 6 5.6858 2.6097 0.0003 8 6 6.1959 4.0522 -0.0009 9 7 7.6608 4.0522 -0.0002 10 6 8.3347 5.2195 -0.0016 11 8 7.7302 6.2703 -0.0947 12 7 9.6786 5.2217 0.1004 13 6 10.4188 6.4862 0.2093 14 6 11.4952 6.5275 -0.8740 15 6 12.3695 5.2759 -0.7692 16 6 13.4508 5.3299 -1.8177 17 1 13.5170 4.5536 -2.5656 18 6 14.3554 6.3705 -1.8220 19 7 14.2749 7.3156 -0.9110 20 14 15.6952 6.4378 -3.1219 21 1 15.5689 5.2650 -4.0241 22 1 15.5556 7.6872 -3.9124 23 1 17.0258 6.4151 -2.4630 24 6 11.5083 4.0300 -0.9890 25 6 10.4317 3.9602 0.0987 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9900 0.6025 0.0006 34 1 6.0492 2.0955 -0.8895 35 1 6.0492 2.0963 0.8905 36 1 5.8326 4.5653 -0.8913 37 1 5.8324 4.5667 0.8886 38 1 8.1459 3.2122 0.0004 39 1 9.7340 7.3233 0.0741 40 1 10.8893 6.5510 1.1904 41 1 12.1133 7.4153 -0.7408 42 1 11.0203 6.5587 -1.8547 43 1 12.8249 5.2328 0.2201 44 1 14.9115 8.0474 -0.9139 45 1 12.1357 3.1403 -0.9374 46 1 11.0329 4.0838 -1.9683 47 1 10.9032 3.8147 1.0706 48 1 9.7548 3.1308 -0.1068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540987405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:33 Heat of formation + Delta-G solvation = -83.706210 kcal Electronic energy + Delta-G solvation = -25505.081813 eV Core-core repulsion = 21787.283681 eV Total energy + Delta-G solvation = -3717.798132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22830 -39.73349 -37.01776 -36.27343 -34.98412 -33.51763 -33.10346 -31.40163 -30.76205 -29.75208 -26.89703 -26.03996 -23.85103 -22.89652 -22.16796 -21.98047 -20.70390 -20.18249 -18.89289 -17.65851 -17.29895 -16.48102 -16.41955 -16.27352 -15.72369 -15.63836 -14.91249 -14.57755 -14.29977 -13.96982 -13.77267 -13.58124 -13.34820 -13.15941 -12.93613 -12.71246 -12.64154 -12.57252 -12.23463 -12.04006 -11.74836 -11.66025 -11.60543 -11.41377 -11.10128 -10.94039 -10.61784 -10.41352 -10.21721 -10.04019 -9.72018 -9.54218 -9.48324 -9.16768 -8.94171 -8.86113 -8.35405 -7.86078 -6.00486 -4.07225 2.32424 2.62085 3.17644 3.28634 3.37244 3.40193 3.61188 4.17755 4.30512 4.42309 4.43470 4.46468 4.63461 4.74427 4.78319 5.09979 5.10993 5.12832 5.28104 5.29360 5.37257 5.49026 5.58514 5.68212 5.75613 5.78624 5.81206 5.93923 6.03471 6.09745 6.30042 6.44633 6.52816 6.62911 6.66333 6.83419 7.00162 7.07007 7.17250 7.27382 7.51895 7.73209 7.87585 7.95241 8.08473 8.34123 8.41957 8.96259 8.99382 9.57866 11.04903 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.001998 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.711914 B =14013.041795 C =14438.407558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.735 5.735 5 C 0.518 3.482 6 O -0.531 6.531 7 C -0.153 4.153 8 C 0.155 3.845 9 N -0.755 5.755 10 C 0.705 3.295 11 O -0.596 6.596 12 N -0.619 5.619 13 C 0.126 3.874 14 C -0.124 4.124 15 C 0.049 3.951 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.124 4.124 25 C 0.114 3.886 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.393 0.607 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.260 0.740 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.738 -17.506 4.041 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.388 5.388 5 C 0.303 3.697 6 O -0.407 6.407 7 C -0.194 4.194 8 C 0.030 3.970 9 N -0.415 5.415 10 C 0.406 3.594 11 O -0.475 6.475 12 N -0.355 5.355 13 C 0.004 3.996 14 C -0.163 4.163 15 C 0.031 3.969 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.162 4.162 25 C -0.009 4.009 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.235 0.765 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.229 0.771 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.541 -15.769 4.051 27.001 hybrid contribution 1.283 -0.908 -0.748 1.741 sum -20.258 -16.677 3.303 26.446 Atomic orbital electron populations 1.21683 0.94481 1.02224 1.02449 1.21739 0.97103 0.95773 1.02756 1.21420 0.79485 0.97184 1.02632 1.46019 1.07456 1.08731 1.76593 1.20447 0.89815 0.83611 0.75777 1.90769 1.70405 1.31155 1.48358 1.21821 0.92425 0.99943 1.05174 1.20748 0.78669 0.93828 1.03757 1.45236 1.06527 1.07709 1.82011 1.15825 0.81866 0.83712 0.77957 1.90887 1.67771 1.30587 1.58253 1.47456 1.03431 1.08658 1.75994 1.21681 0.94063 0.83806 1.00007 1.21947 0.95067 1.04083 0.95171 1.18628 0.91990 0.88893 0.97435 1.21225 1.12127 1.08285 1.13505 0.92718 1.24967 0.97596 0.95673 0.95749 1.69857 1.36639 1.12113 1.34220 0.86568 0.81865 0.77929 0.81802 1.19899 1.21057 1.21080 1.22013 0.96282 1.01243 0.96679 1.21701 0.94283 0.84533 1.00426 0.92280 0.92132 0.92287 0.91255 0.91273 0.91408 0.91390 0.76488 0.88067 0.88122 0.90894 0.91057 0.77054 0.90512 0.92575 0.87835 0.94374 0.95469 0.93004 0.92187 0.92912 0.91950 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.91 37.16 0.37 -0.19 16 2 C -0.14 -0.51 6.05 -26.73 -0.16 -0.67 16 3 C 0.12 0.74 5.67 -4.04 -0.02 0.71 16 4 N -0.73 -4.63 5.56 -60.30 -0.33 -4.97 16 5 C 0.52 4.97 7.83 -10.99 -0.09 4.89 16 6 O -0.53 -7.65 15.98 5.56 0.09 -7.56 16 7 C -0.15 -1.16 5.81 -27.89 -0.16 -1.32 16 8 C 0.15 1.94 4.97 -4.05 -0.02 1.92 16 9 N -0.76 -10.24 5.47 -65.23 -0.36 -10.59 16 10 C 0.70 13.12 8.30 -86.91 -0.72 12.40 16 11 O -0.60 -13.49 15.77 5.29 0.08 -13.41 16 12 N -0.62 -11.43 2.98 -178.75 -0.53 -11.96 16 13 C 0.13 2.61 6.41 -3.93 -0.03 2.59 16 14 C -0.12 -2.91 5.14 -26.83 -0.14 -3.05 16 15 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 16 C -0.51 -13.66 8.56 -34.44 -0.29 -13.95 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -24.83 11.31 55.43 0.63 -24.21 16 20 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.12 -2.36 5.30 -26.61 -0.14 -2.50 16 25 C 0.11 1.79 6.39 -3.71 -0.02 1.76 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 1.29 8.47 -40.82 -0.35 0.94 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.39 4.12 5.96 -40.82 -0.24 3.87 16 39 H 0.08 1.65 6.99 -51.93 -0.36 1.28 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.10 2.71 6.03 -51.93 -0.31 2.39 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 0.70 5.64 -51.93 -0.29 0.40 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -34.30 383.11 -9.67 -43.97 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.28 Total: 1.87 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.71 Total: 5.12 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.60 Total: -51.73 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.17 Total: -20.97 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.30 -9.67 -43.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540987405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.736 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds