Wall clock time and date at job start Tue Mar 31 2020 09:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47091 * 2 1 4 4 N 1.46495 * 109.46991 * 179.97438 * 3 2 1 5 5 C 1.34778 * 120.00129 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99771 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00310 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.47412 * 179.97438 * 7 5 4 9 9 N 1.46495 * 109.47231 * 179.97438 * 8 7 5 10 10 C 1.34784 * 119.99802 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99909 * 355.02087 * 10 9 8 12 12 N 1.34774 * 119.99579 * 175.01574 * 10 9 8 13 13 C 1.46930 * 120.62594 * 184.94940 * 12 10 9 14 14 C 1.52767 * 109.00782 * 233.58299 * 13 12 10 15 15 C 1.53032 * 109.38339 * 305.58995 * 14 13 12 16 16 C 1.50707 * 109.44938 * 181.25043 * 15 14 13 17 17 H 1.07995 * 120.00109 * 239.94425 * 16 15 14 18 18 C 1.37881 * 119.99688 * 59.93740 * 16 15 14 19 19 N 1.31517 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99781 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47079 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47080 * 120.00515 * 20 18 16 23 23 H 1.48500 * 109.46956 * 239.99957 * 20 18 16 24 24 C 1.53043 * 109.54075 * 61.24387 * 15 14 13 25 25 C 1.46924 * 120.63429 * 5.23244 * 12 10 9 26 26 H 1.09001 * 109.46895 * 60.00061 * 1 2 3 27 27 H 1.08997 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47592 * 300.00359 * 1 2 3 29 29 H 1.08999 * 109.47007 * 239.99927 * 2 1 3 30 30 H 1.09001 * 109.46895 * 119.99939 * 2 1 3 31 31 H 1.09000 * 109.46872 * 59.99704 * 3 2 1 32 32 H 1.08997 * 109.46489 * 299.99808 * 3 2 1 33 33 H 0.97001 * 120.00457 * 0.02562 * 4 3 2 34 34 H 1.09006 * 109.47413 * 59.99698 * 7 5 4 35 35 H 1.09003 * 109.47486 * 299.99875 * 7 5 4 36 36 H 1.09001 * 109.47084 * 299.99996 * 8 7 5 37 37 H 1.09000 * 109.46749 * 59.99803 * 8 7 5 38 38 H 0.97001 * 120.00457 * 0.02562 * 9 8 7 39 39 H 1.08993 * 109.58889 * 353.42310 * 13 12 10 40 40 H 1.09001 * 109.58692 * 113.85050 * 13 12 10 41 41 H 1.08993 * 109.56435 * 185.55251 * 14 13 12 42 42 H 1.09005 * 109.38001 * 65.52056 * 14 13 12 43 43 H 1.08995 * 109.46367 * 301.21499 * 15 14 13 44 44 H 0.97002 * 120.00033 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.50039 * 178.68018 * 24 15 14 46 46 H 1.08993 * 109.52537 * 58.59429 * 24 15 14 47 47 H 1.08998 * 109.58805 * 246.15013 * 25 12 10 48 48 H 1.09000 * 109.58747 * 6.43515 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6600 -0.0002 7 6 5.6858 2.6097 0.0003 8 6 6.1959 4.0522 -0.0009 9 7 7.6608 4.0522 -0.0002 10 6 8.3347 5.2195 -0.0016 11 8 7.7302 6.2703 -0.0947 12 7 9.6786 5.2217 0.1004 13 6 10.4188 6.4862 0.2093 14 6 11.4952 6.5275 -0.8740 15 6 12.3695 5.2759 -0.7692 16 6 13.4508 5.3299 -1.8177 17 1 13.5170 4.5536 -2.5656 18 6 14.3554 6.3705 -1.8220 19 7 14.2749 7.3156 -0.9110 20 14 15.6952 6.4378 -3.1219 21 1 15.5689 5.2650 -4.0241 22 1 15.5556 7.6872 -3.9124 23 1 17.0258 6.4151 -2.4630 24 6 11.5083 4.0300 -0.9890 25 6 10.4317 3.9602 0.0987 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9900 0.6025 0.0006 34 1 6.0492 2.0955 -0.8895 35 1 6.0492 2.0963 0.8905 36 1 5.8326 4.5653 -0.8913 37 1 5.8324 4.5667 0.8886 38 1 8.1459 3.2122 0.0004 39 1 9.7340 7.3233 0.0741 40 1 10.8893 6.5510 1.1904 41 1 12.1133 7.4153 -0.7408 42 1 11.0203 6.5587 -1.8547 43 1 12.8249 5.2328 0.2201 44 1 14.9115 8.0474 -0.9139 45 1 12.1357 3.1403 -0.9374 46 1 11.0329 4.0838 -1.9683 47 1 10.9032 3.8147 1.0706 48 1 9.7548 3.1308 -0.1068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540987405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:32 Heat of formation + Delta-G solvation = -108.122114 kcal Electronic energy + Delta-G solvation = -25506.140566 eV Core-core repulsion = 21787.283681 eV Total energy + Delta-G solvation = -3718.856885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.43397 -40.74334 -38.58585 -36.90509 -36.19488 -35.33669 -33.67162 -32.99939 -32.14627 -31.09773 -28.08720 -27.25855 -25.07649 -24.35815 -23.57459 -22.54579 -21.82062 -21.37541 -20.36661 -19.10725 -18.33687 -18.06733 -17.21031 -17.02820 -16.97007 -16.57705 -16.52206 -15.90484 -15.43090 -15.21653 -14.89470 -14.82201 -14.62146 -14.42561 -14.20991 -13.86267 -13.81120 -13.40981 -13.39243 -13.02233 -12.98895 -12.83051 -12.75285 -12.45667 -12.40658 -12.14603 -12.02393 -11.91528 -11.74053 -11.43209 -11.36310 -10.99689 -10.89251 -10.76998 -10.39542 -10.25170 -10.09969 -9.37605 -8.05920 -6.19665 1.40942 1.44111 1.53762 1.58871 1.61081 2.14027 2.26931 2.45142 3.00896 3.20957 3.65777 3.91408 4.01500 4.07313 4.12603 4.14735 4.26819 4.36813 4.37347 4.51417 4.54117 4.63815 4.66790 4.74495 4.78362 4.87796 4.88715 4.93342 4.93672 5.01596 5.16482 5.21590 5.25734 5.26924 5.34766 5.45545 5.49338 5.50075 5.53371 5.67989 6.00595 6.08465 6.14386 6.40542 6.54652 6.92630 7.02703 7.25620 7.48598 7.57646 8.97646 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.001998 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.711914 B =14013.041795 C =14438.407558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.114 3.886 4 N -0.716 5.716 5 C 0.513 3.487 6 O -0.590 6.590 7 C -0.137 4.137 8 C 0.156 3.844 9 N -0.729 5.729 10 C 0.699 3.301 11 O -0.643 6.643 12 N -0.621 5.621 13 C 0.138 3.862 14 C -0.112 4.112 15 C 0.044 3.956 16 C -0.531 4.531 17 H 0.054 0.946 18 C 0.012 3.988 19 N -0.916 5.916 20 Si 0.950 3.050 21 H -0.266 1.266 22 H -0.287 1.287 23 H -0.280 1.280 24 C -0.116 4.116 25 C 0.117 3.883 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.420 0.580 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.413 0.587 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.006 0.994 44 H 0.259 0.741 45 H 0.077 0.923 46 H 0.044 0.956 47 H 0.078 0.922 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.860 -21.328 4.077 30.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.369 5.369 5 C 0.300 3.700 6 O -0.471 6.471 7 C -0.176 4.176 8 C 0.031 3.969 9 N -0.389 5.389 10 C 0.401 3.599 11 O -0.526 6.526 12 N -0.357 5.357 13 C 0.015 3.985 14 C -0.151 4.151 15 C 0.026 3.974 16 C -0.569 4.569 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.556 5.556 20 Si 0.776 3.224 21 H -0.191 1.191 22 H -0.213 1.213 23 H -0.206 1.206 24 C -0.155 4.155 25 C -0.005 4.005 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.258 0.742 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.253 0.747 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.037 0.963 43 H 0.024 0.976 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.096 0.904 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.654 -19.721 4.087 29.572 hybrid contribution 1.288 0.271 -0.766 1.524 sum -20.366 -19.450 3.320 28.356 Atomic orbital electron populations 1.21711 0.94584 1.02752 1.02049 1.21678 0.96919 0.93828 1.03875 1.21448 0.79493 0.98827 1.01237 1.45881 1.07526 1.08743 1.74736 1.20850 0.90736 0.83492 0.74941 1.90759 1.71615 1.33362 1.51334 1.21739 0.90671 0.96729 1.08499 1.20704 0.77711 0.97087 1.01388 1.44961 1.06836 1.06887 1.80223 1.16052 0.81768 0.84403 0.77715 1.90860 1.68686 1.32815 1.60205 1.47403 1.03628 1.08733 1.75952 1.21327 0.93080 0.85045 0.99091 1.21712 0.95314 1.03029 0.95055 1.18619 0.92183 0.91183 0.95451 1.21639 1.12993 1.08155 1.14081 0.92789 1.25717 0.99793 0.95551 0.97606 1.69990 1.37358 1.12563 1.35677 0.85628 0.79381 0.77829 0.79522 1.19067 1.21310 1.20618 1.21875 0.96719 0.99325 0.97554 1.21870 0.94175 0.84483 0.99993 0.92792 0.91082 0.92704 0.90128 0.90020 0.92839 0.92972 0.74201 0.84814 0.84435 0.93780 0.93293 0.74681 0.91918 0.91925 0.91005 0.96329 0.97589 0.93135 0.90426 0.93704 0.90395 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.21 16 2 C -0.13 -0.66 6.05 30.60 0.19 -0.48 16 3 C 0.11 1.32 5.67 86.38 0.49 1.81 16 4 N -0.72 -7.29 5.56 -463.07 -2.57 -9.86 16 5 C 0.51 9.01 7.83 87.65 0.69 9.69 16 6 O -0.59 -17.32 15.98 -3.03 -0.05 -17.37 16 7 C -0.14 -1.58 5.81 29.85 0.17 -1.41 16 8 C 0.16 3.71 4.97 86.38 0.43 4.14 16 9 N -0.73 -17.76 5.47 -478.54 -2.62 -20.38 16 10 C 0.70 25.27 8.30 179.05 1.49 26.75 16 11 O -0.64 -29.63 15.77 -3.99 -0.06 -29.70 16 12 N -0.62 -22.07 2.98 -837.72 -2.50 -24.57 16 13 C 0.14 5.78 6.41 86.22 0.55 6.33 16 14 C -0.11 -5.42 5.14 30.53 0.16 -5.27 16 15 C 0.04 2.10 2.07 -11.51 -0.02 2.07 16 16 C -0.53 -28.31 8.56 25.60 0.22 -28.09 16 17 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 18 C 0.01 0.64 5.30 84.66 0.45 1.09 16 19 N -0.92 -52.29 11.31 21.45 0.24 -52.05 16 20 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 C -0.12 -4.18 5.30 30.68 0.16 -4.02 16 25 C 0.12 3.26 6.39 86.37 0.55 3.81 16 26 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.42 1.03 8.47 -92.71 -0.79 0.24 16 34 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.04 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 38 H 0.41 6.58 5.96 -92.71 -0.55 6.02 16 39 H 0.06 2.79 6.99 -2.39 -0.02 2.77 16 40 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.07 3.93 6.03 -2.39 -0.01 3.91 16 42 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.11 1.96 5.64 -2.39 -0.01 1.94 16 Total: -1.00 -79.79 383.11 0.32 -79.47 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -0.39 Total: 12.97 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.23 Total: 16.24 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -7.44 Total: -106.86 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -0.11 Total: -47.07 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -79.79 0.32 -79.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540987405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.653 kcal (2) G-P(sol) polarization free energy of solvation -79.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds