Wall clock time and date at job start Tue Mar 31 2020 11:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21274 * 120.00379 * 2 1 4 4 N 1.34774 * 119.99521 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00308 * 5.25265 * 4 2 1 6 6 C 1.46500 * 119.99885 * 185.24621 * 4 2 1 7 7 C 1.50697 * 109.47228 * 270.00337 * 6 4 2 8 8 O 1.21275 * 120.00137 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00020 * 180.02562 * 7 6 4 10 10 C 1.47424 * 125.64621 * 0.04032 * 9 7 6 11 11 C 1.54913 * 104.83057 * 204.09489 * 10 9 7 12 12 H 1.08997 * 111.00696 * 81.06741 * 11 10 9 13 13 C 1.53002 * 111.00218 * 204.91530 * 11 10 9 14 14 C 1.55160 * 101.58080 * 322.98841 * 11 10 9 15 15 H 1.09000 * 110.87120 * 277.06705 * 14 11 10 16 16 C 1.52997 * 110.71831 * 153.86532 * 14 11 10 17 17 C 1.52994 * 109.47144 * 180.02562 * 16 14 11 18 18 N 1.46502 * 109.47059 * 180.02562 * 17 16 14 19 19 C 1.36941 * 119.99657 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38820 * 119.99489 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00158 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99771 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47146 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47237 * 119.99741 * 23 21 19 26 26 H 1.48491 * 109.47245 * 240.00359 * 23 21 19 27 27 C 1.47016 * 125.65178 * 180.02562 * 9 7 6 28 28 H 1.09001 * 109.47018 * 264.66229 * 1 2 3 29 29 H 1.09000 * 109.46979 * 24.65874 * 1 2 3 30 30 H 1.08999 * 109.47411 * 144.65987 * 1 2 3 31 31 H 1.09006 * 109.46758 * 274.55176 * 5 4 2 32 32 H 1.08996 * 109.47159 * 34.55254 * 5 4 2 33 33 H 1.08998 * 109.47597 * 154.55212 * 5 4 2 34 34 H 1.09005 * 109.47150 * 150.00478 * 6 4 2 35 35 H 1.09000 * 109.47036 * 30.00642 * 6 4 2 36 36 H 1.09006 * 110.37148 * 322.93222 * 10 9 7 37 37 H 1.09004 * 110.36888 * 85.14393 * 10 9 7 38 38 H 1.09005 * 109.47165 * 172.19176 * 13 11 10 39 39 H 1.08999 * 109.47539 * 292.20102 * 13 11 10 40 40 H 1.09000 * 109.47088 * 52.19529 * 13 11 10 41 41 H 1.09009 * 109.47115 * 60.02731 * 16 14 11 42 42 H 1.09002 * 109.47395 * 300.03191 * 16 14 11 43 43 H 1.08999 * 109.46878 * 60.00044 * 17 16 14 44 44 H 1.08997 * 109.47112 * 300.00030 * 17 16 14 45 45 H 0.96993 * 120.00053 * 359.97438 * 18 17 16 46 46 H 0.96998 * 120.00128 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.88196 * 59.55461 * 27 9 7 48 48 H 1.09005 * 109.88201 * 298.39128 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4529 -2.4333 -0.1151 6 6 3.6412 -1.1699 0.1165 7 6 4.2545 -1.1065 -1.2585 8 8 3.5419 -1.0637 -2.2389 9 7 5.5950 -1.0983 -1.3989 10 6 6.5744 -1.1479 -0.2981 11 6 7.8588 -0.5073 -0.8809 12 1 7.8010 0.5807 -0.8510 13 6 9.1036 -1.0085 -0.1460 14 6 7.8296 -1.0259 -2.3430 15 1 8.2476 -2.0305 -2.4072 16 6 8.5801 -0.0692 -3.2717 17 6 8.5331 -0.6065 -4.7034 18 7 9.2522 0.3092 -5.5925 19 6 9.3434 0.0335 -6.9308 20 1 8.8855 -0.8591 -7.3307 21 6 10.0244 0.9016 -7.7734 22 7 10.5819 1.9896 -7.2861 23 14 10.1494 0.5252 -9.5988 24 1 9.4430 -0.7479 -9.8913 25 1 9.5253 1.6265 -10.3751 26 1 11.5785 0.3980 -9.9812 27 6 6.3226 -1.0386 -2.6749 28 1 -0.3633 -0.0956 1.0232 29 1 -0.3633 0.9340 -0.4288 30 1 -0.3634 -0.8383 -0.5944 31 1 1.1207 -2.7529 0.8727 32 1 0.5872 -2.2969 -0.7630 33 1 2.1092 -3.1923 -0.5408 34 1 3.9643 -2.0830 0.6167 35 1 3.9612 -0.3048 0.6974 36 1 6.2162 -0.5712 0.5548 37 1 6.7631 -2.1806 -0.0045 38 1 9.9968 -0.6538 -0.6605 39 1 9.0989 -0.6305 0.8763 40 1 9.1021 -2.0984 -0.1303 41 1 9.6178 0.0121 -2.9480 42 1 8.1106 0.9139 -3.2369 43 1 7.4954 -0.6878 -5.0271 44 1 9.0026 -1.5896 -4.7381 45 1 9.6631 1.1111 -5.2334 46 1 11.0580 2.5960 -7.8748 47 1 6.0536 -0.1296 -3.2129 48 1 6.0837 -1.9139 -3.2792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103905423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:41 Heat of formation + Delta-G solvation = -59.904125 kcal Electronic energy + Delta-G solvation = -26120.811563 eV Core-core repulsion = 22404.045567 eV Total energy + Delta-G solvation = -3716.765996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.65697 -39.67891 -37.97589 -35.68473 -35.12141 -33.32307 -32.05512 -31.16675 -30.16438 -28.58979 -27.17329 -26.56017 -25.95397 -24.02684 -22.45420 -20.81290 -20.39764 -19.87300 -19.11141 -17.47615 -17.35975 -17.02972 -16.66168 -16.11528 -15.69981 -15.16071 -14.68690 -14.47957 -14.32379 -13.79077 -13.68043 -13.64097 -13.31898 -13.25609 -13.12036 -13.06979 -12.73203 -12.71895 -12.61906 -12.39161 -12.19834 -12.04482 -11.72708 -11.43707 -11.13988 -11.01561 -10.83054 -10.59327 -10.42233 -10.25030 -10.22316 -10.12294 -9.91698 -9.63310 -9.00793 -8.83315 -8.71444 -6.87601 -5.72577 -3.00941 2.24447 2.51888 2.55428 3.02980 3.46499 3.51961 3.54373 4.23336 4.26678 4.34074 4.56223 4.64837 4.68445 4.71037 4.76538 4.89921 4.92778 5.02085 5.11339 5.15060 5.23015 5.25184 5.29062 5.34179 5.50117 5.55362 5.55568 5.62057 5.73365 5.79804 5.88624 5.93797 6.02412 6.03274 6.12089 6.18743 6.32530 6.41026 6.42783 6.87790 6.92292 6.97551 7.40497 7.74649 7.85072 8.07283 8.46664 9.57604 10.16208 10.50652 11.50621 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002604 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.566846 B =10748.722777 C =11781.900638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.516 3.484 3 O -0.539 6.539 4 N -0.604 5.604 5 C 0.082 3.918 6 C 0.102 3.898 7 C 0.510 3.490 8 O -0.530 6.530 9 N -0.618 5.618 10 C 0.101 3.899 11 C -0.102 4.102 12 H 0.088 0.912 13 C -0.140 4.140 14 C -0.088 4.088 15 H 0.086 0.914 16 C -0.115 4.115 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.112 3.888 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.019 0.981 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.074 0.926 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.738 -11.257 24.047 30.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.305 3.695 3 O -0.416 6.416 4 N -0.338 5.338 5 C -0.060 4.060 6 C -0.025 4.025 7 C 0.296 3.704 8 O -0.406 6.406 9 N -0.353 5.353 10 C -0.022 4.022 11 C -0.121 4.121 12 H 0.106 0.894 13 C -0.198 4.198 14 C -0.108 4.108 15 H 0.104 0.896 16 C -0.153 4.153 17 C 0.024 3.976 18 N -0.378 5.378 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.010 4.010 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.961 -10.769 23.360 30.272 hybrid contribution 0.327 -0.012 -1.020 1.072 sum -15.633 -10.780 22.339 29.320 Atomic orbital electron populations 1.21949 0.91309 1.05372 1.04486 1.20858 0.90832 0.82842 0.74976 1.90738 1.70710 1.31098 1.49027 1.47492 1.05411 1.07280 1.73615 1.21847 0.97657 0.85012 1.01531 1.21273 0.81187 1.05221 0.94801 1.20803 0.80748 0.76712 0.92101 1.90719 1.60050 1.49264 1.40537 1.48549 1.04731 1.73170 1.08869 1.22484 0.88949 1.00808 0.89987 1.22435 0.93754 1.01004 0.94903 0.89362 1.21695 0.97089 1.01103 0.99865 1.22279 0.93687 1.00674 0.94133 0.89559 1.21734 1.00134 0.98211 0.95266 1.20678 0.95330 0.93429 0.88170 1.42375 1.64534 1.26105 1.04814 1.19291 1.28026 1.05311 0.84211 0.91162 1.24749 1.01025 0.97250 0.98159 1.69667 1.40874 1.13532 1.34260 0.86111 0.77229 0.77378 0.85479 1.20554 1.21861 1.21878 1.22116 0.90827 1.02768 0.85304 0.88830 0.88869 0.89663 0.92178 0.90600 0.90836 0.87570 0.87069 0.90750 0.91065 0.91532 0.92486 0.92403 0.91275 0.91677 0.96348 0.96468 0.78329 0.93595 0.90769 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 9.69 36.01 0.35 -0.81 16 2 C 0.52 5.88 7.76 -10.98 -0.09 5.79 16 3 O -0.54 -8.68 16.73 5.56 0.09 -8.58 16 4 N -0.60 -5.73 2.36 -182.95 -0.43 -6.16 16 5 C 0.08 0.46 10.11 59.85 0.60 1.07 16 6 C 0.10 0.96 4.83 -5.20 -0.03 0.93 16 7 C 0.51 6.92 7.92 -10.99 -0.09 6.83 16 8 O -0.53 -9.53 16.76 5.56 0.09 -9.44 16 9 N -0.62 -7.60 3.33 -170.52 -0.57 -8.17 16 10 C 0.10 0.86 6.16 -2.53 -0.02 0.85 16 11 C -0.10 -0.99 3.09 -88.47 -0.27 -1.26 16 12 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 13 C -0.14 -1.11 9.31 37.16 0.35 -0.76 16 14 C -0.09 -1.09 2.45 -88.79 -0.22 -1.31 16 15 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 16 C -0.12 -1.83 4.71 -26.74 -0.13 -1.96 16 17 C 0.15 3.11 6.11 -4.04 -0.02 3.09 16 18 N -0.73 -19.31 5.60 -59.91 -0.34 -19.64 16 19 C -0.24 -6.89 9.99 -15.05 -0.15 -7.04 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 23 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 C 0.11 1.58 5.61 -3.07 -0.02 1.56 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.41 6.09 -51.93 -0.32 0.10 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.37 6.16 -51.93 -0.32 0.05 16 33 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 34 H 0.11 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.11 1.06 7.21 -51.93 -0.37 0.69 16 36 H 0.07 0.51 7.48 -51.93 -0.39 0.13 16 37 H 0.07 0.48 7.99 -51.93 -0.41 0.07 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 42 H 0.06 1.09 8.06 -51.93 -0.42 0.68 16 43 H 0.02 0.39 7.49 -51.93 -0.39 0.01 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 10.52 7.67 -40.82 -0.31 10.20 16 46 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 1.24 7.76 -51.93 -0.40 0.84 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -38.62 389.40 -7.75 -46.38 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.36 Total: 3.63 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 0.18 Total: 6.41 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.61 Total: -62.30 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.19 Total: -18.02 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.62 -7.75 -46.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103905423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.527 kcal (2) G-P(sol) polarization free energy of solvation -38.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds