Wall clock time and date at job start Tue Mar 31 2020 11:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21274 * 120.00379 * 2 1 4 4 N 1.34774 * 119.99521 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00308 * 5.25265 * 4 2 1 6 6 C 1.46500 * 119.99885 * 185.24621 * 4 2 1 7 7 C 1.50697 * 109.47228 * 270.00337 * 6 4 2 8 8 O 1.21275 * 120.00137 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00020 * 180.02562 * 7 6 4 10 10 C 1.47424 * 125.64621 * 0.04032 * 9 7 6 11 11 C 1.54913 * 104.83057 * 204.09489 * 10 9 7 12 12 H 1.08997 * 111.00696 * 81.06741 * 11 10 9 13 13 C 1.53002 * 111.00218 * 204.91530 * 11 10 9 14 14 C 1.55160 * 101.58080 * 322.98841 * 11 10 9 15 15 H 1.09000 * 110.87120 * 277.06705 * 14 11 10 16 16 C 1.52997 * 110.71831 * 153.86532 * 14 11 10 17 17 C 1.52994 * 109.47144 * 180.02562 * 16 14 11 18 18 N 1.46502 * 109.47059 * 180.02562 * 17 16 14 19 19 C 1.36941 * 119.99657 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38820 * 119.99489 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00158 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99771 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47146 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47237 * 119.99741 * 23 21 19 26 26 H 1.48491 * 109.47245 * 240.00359 * 23 21 19 27 27 C 1.47016 * 125.65178 * 180.02562 * 9 7 6 28 28 H 1.09001 * 109.47018 * 264.66229 * 1 2 3 29 29 H 1.09000 * 109.46979 * 24.65874 * 1 2 3 30 30 H 1.08999 * 109.47411 * 144.65987 * 1 2 3 31 31 H 1.09006 * 109.46758 * 274.55176 * 5 4 2 32 32 H 1.08996 * 109.47159 * 34.55254 * 5 4 2 33 33 H 1.08998 * 109.47597 * 154.55212 * 5 4 2 34 34 H 1.09005 * 109.47150 * 150.00478 * 6 4 2 35 35 H 1.09000 * 109.47036 * 30.00642 * 6 4 2 36 36 H 1.09006 * 110.37148 * 322.93222 * 10 9 7 37 37 H 1.09004 * 110.36888 * 85.14393 * 10 9 7 38 38 H 1.09005 * 109.47165 * 172.19176 * 13 11 10 39 39 H 1.08999 * 109.47539 * 292.20102 * 13 11 10 40 40 H 1.09000 * 109.47088 * 52.19529 * 13 11 10 41 41 H 1.09009 * 109.47115 * 60.02731 * 16 14 11 42 42 H 1.09002 * 109.47395 * 300.03191 * 16 14 11 43 43 H 1.08999 * 109.46878 * 60.00044 * 17 16 14 44 44 H 1.08997 * 109.47112 * 300.00030 * 17 16 14 45 45 H 0.96993 * 120.00053 * 359.97438 * 18 17 16 46 46 H 0.96998 * 120.00128 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.88196 * 59.55461 * 27 9 7 48 48 H 1.09005 * 109.88201 * 298.39128 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4529 -2.4333 -0.1151 6 6 3.6412 -1.1699 0.1165 7 6 4.2545 -1.1065 -1.2585 8 8 3.5419 -1.0637 -2.2389 9 7 5.5950 -1.0983 -1.3989 10 6 6.5744 -1.1479 -0.2981 11 6 7.8588 -0.5073 -0.8809 12 1 7.8010 0.5807 -0.8510 13 6 9.1036 -1.0085 -0.1460 14 6 7.8296 -1.0259 -2.3430 15 1 8.2476 -2.0305 -2.4072 16 6 8.5801 -0.0692 -3.2717 17 6 8.5331 -0.6065 -4.7034 18 7 9.2522 0.3092 -5.5925 19 6 9.3434 0.0335 -6.9308 20 1 8.8855 -0.8591 -7.3307 21 6 10.0244 0.9016 -7.7734 22 7 10.5819 1.9896 -7.2861 23 14 10.1494 0.5252 -9.5988 24 1 9.4430 -0.7479 -9.8913 25 1 9.5253 1.6265 -10.3751 26 1 11.5785 0.3980 -9.9812 27 6 6.3226 -1.0386 -2.6749 28 1 -0.3633 -0.0956 1.0232 29 1 -0.3633 0.9340 -0.4288 30 1 -0.3634 -0.8383 -0.5944 31 1 1.1207 -2.7529 0.8727 32 1 0.5872 -2.2969 -0.7630 33 1 2.1092 -3.1923 -0.5408 34 1 3.9643 -2.0830 0.6167 35 1 3.9612 -0.3048 0.6974 36 1 6.2162 -0.5712 0.5548 37 1 6.7631 -2.1806 -0.0045 38 1 9.9968 -0.6538 -0.6605 39 1 9.0989 -0.6305 0.8763 40 1 9.1021 -2.0984 -0.1303 41 1 9.6178 0.0121 -2.9480 42 1 8.1106 0.9139 -3.2369 43 1 7.4954 -0.6878 -5.0271 44 1 9.0026 -1.5896 -4.7381 45 1 9.6631 1.1111 -5.2334 46 1 11.0580 2.5960 -7.8748 47 1 6.0536 -0.1296 -3.2129 48 1 6.0837 -1.9139 -3.2792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103905423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:40 Heat of formation + Delta-G solvation = -87.623973 kcal Electronic energy + Delta-G solvation = -26122.013586 eV Core-core repulsion = 22404.045567 eV Total energy + Delta-G solvation = -3717.968019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58146 -40.58074 -39.06407 -36.91139 -36.49383 -34.71302 -33.48753 -32.08764 -31.54535 -29.49697 -28.22660 -27.33389 -26.86614 -25.68291 -24.00713 -22.13093 -21.25283 -20.90879 -19.96094 -19.19883 -18.34450 -18.15846 -17.51442 -17.08438 -16.68309 -16.53533 -16.12376 -15.70339 -15.47808 -15.31101 -15.03373 -14.60974 -14.38929 -14.31979 -14.06138 -13.77981 -13.65055 -13.64555 -13.36851 -13.26000 -13.10948 -12.95616 -12.90661 -12.68131 -12.63868 -12.51628 -12.31172 -12.09644 -11.93749 -11.68495 -11.57735 -11.24606 -11.21807 -11.01173 -10.97530 -9.79020 -9.73740 -9.04938 -7.99587 -5.29076 1.40136 1.43711 1.45543 1.52299 1.55616 1.83091 2.19285 2.52496 3.33078 3.34434 3.50124 3.62645 3.66606 3.75447 4.09641 4.12622 4.19573 4.22309 4.26097 4.31653 4.39671 4.44111 4.48364 4.56099 4.57304 4.63414 4.69940 4.75163 4.78557 4.86306 4.87724 4.90852 5.01672 5.10355 5.13971 5.18246 5.26629 5.31128 5.35561 5.40747 5.45392 5.54144 6.23376 6.28036 6.44993 7.01081 7.10892 7.28877 8.04734 8.28127 9.24394 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002604 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.566846 B =10748.722777 C =11781.900638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.501 3.499 3 O -0.601 6.601 4 N -0.605 5.605 5 C 0.075 3.925 6 C 0.106 3.894 7 C 0.500 3.500 8 O -0.587 6.587 9 N -0.618 5.618 10 C 0.101 3.899 11 C -0.097 4.097 12 H 0.075 0.925 13 C -0.135 4.135 14 C -0.077 4.077 15 H 0.104 0.896 16 C -0.101 4.101 17 C 0.150 3.850 18 N -0.749 5.749 19 C -0.248 4.248 20 H 0.074 0.926 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.976 3.024 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.288 1.288 27 C 0.113 3.887 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.008 0.992 44 H 0.026 0.974 45 H 0.374 0.626 46 H 0.252 0.748 47 H 0.035 0.965 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.250 -13.776 26.311 33.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.292 3.708 3 O -0.482 6.482 4 N -0.337 5.337 5 C -0.066 4.066 6 C -0.021 4.021 7 C 0.288 3.712 8 O -0.467 6.467 9 N -0.352 5.352 10 C -0.021 4.021 11 C -0.116 4.116 12 H 0.093 0.907 13 C -0.192 4.192 14 C -0.097 4.097 15 H 0.122 0.878 16 C -0.139 4.139 17 C 0.024 3.976 18 N -0.392 5.392 19 C -0.380 4.380 20 H 0.091 0.909 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.805 3.195 24 H -0.191 1.191 25 H -0.220 1.220 26 H -0.215 1.215 27 C -0.011 4.011 28 H 0.141 0.859 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.026 0.974 44 H 0.044 0.956 45 H 0.205 0.795 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.481 -13.367 25.674 33.309 hybrid contribution 0.460 0.730 -1.714 1.919 sum -16.021 -12.638 23.961 31.472 Atomic orbital electron populations 1.21982 0.87976 1.05767 1.06656 1.21741 0.92686 0.82507 0.73849 1.90701 1.72159 1.33263 1.52099 1.47734 1.05669 1.08153 1.72140 1.22132 0.97507 0.83151 1.03787 1.21439 0.81262 1.07388 0.92028 1.21719 0.80761 0.75430 0.93242 1.90683 1.61401 1.51960 1.42668 1.48677 1.05120 1.72201 1.09154 1.22780 0.87013 1.03096 0.89170 1.22416 0.95730 1.00432 0.92994 0.90689 1.21673 0.95093 1.02065 1.00387 1.22179 0.91628 1.00631 0.95214 0.87810 1.21573 1.00980 0.98149 0.93242 1.20848 0.93870 0.92964 0.89925 1.42623 1.64979 1.26672 1.04889 1.19683 1.27419 1.05258 0.85661 0.90854 1.25629 1.01242 0.97304 1.02786 1.69821 1.41945 1.14575 1.35728 0.85036 0.77225 0.77487 0.79801 1.19107 1.22009 1.21453 1.21937 0.92421 1.00357 0.86344 0.85903 0.89868 0.87530 0.88682 0.90041 0.90813 0.82887 0.87165 0.88353 0.87777 0.92745 0.90518 0.90858 0.90605 0.93306 0.97360 0.95622 0.79461 0.93869 0.94666 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.69 71.24 0.69 -1.29 16 2 C 0.50 11.23 7.76 87.66 0.68 11.91 16 3 O -0.60 -20.04 16.73 -3.01 -0.05 -20.09 16 4 N -0.61 -10.51 2.36 -851.13 -2.01 -12.52 16 5 C 0.08 0.64 10.11 127.77 1.29 1.93 16 6 C 0.11 1.78 4.83 85.63 0.41 2.20 16 7 C 0.50 13.47 7.92 87.66 0.69 14.16 16 8 O -0.59 -21.96 16.76 -3.01 -0.05 -22.01 16 9 N -0.62 -14.76 3.33 -811.79 -2.70 -17.46 16 10 C 0.10 1.42 6.16 86.86 0.53 1.95 16 11 C -0.10 -1.69 3.09 -9.40 -0.03 -1.72 16 12 H 0.07 1.53 8.05 -2.39 -0.02 1.51 16 13 C -0.13 -1.70 9.31 71.98 0.67 -1.03 16 14 C -0.08 -1.85 2.45 -9.61 -0.02 -1.87 16 15 H 0.10 2.19 8.04 -2.39 -0.02 2.17 16 16 C -0.10 -3.28 4.71 30.59 0.14 -3.13 16 17 C 0.15 6.32 6.11 86.38 0.53 6.85 16 18 N -0.75 -40.46 5.60 -343.45 -1.92 -42.38 16 19 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 20 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.08 -4.65 5.50 84.87 0.47 -4.18 16 22 N -0.97 -61.51 13.06 21.65 0.28 -61.23 16 23 Si 0.98 47.88 29.55 68.60 2.03 49.91 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 C 0.11 3.27 5.61 86.73 0.49 3.76 16 28 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 0.80 6.09 -2.39 -0.01 0.78 16 31 H 0.09 0.18 8.14 -2.38 -0.02 0.16 16 32 H 0.08 0.60 6.16 -2.39 -0.01 0.58 16 33 H 0.07 0.65 8.04 -2.39 -0.02 0.63 16 34 H 0.15 1.09 8.07 -2.38 -0.02 1.07 16 35 H 0.11 1.94 7.21 -2.39 -0.02 1.92 16 36 H 0.10 0.99 7.48 -2.38 -0.02 0.97 16 37 H 0.10 0.88 7.99 -2.38 -0.02 0.86 16 38 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 41 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 43 H 0.01 0.37 7.49 -2.39 -0.02 0.36 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.37 21.24 7.67 -92.71 -0.71 20.53 16 46 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 47 H 0.03 1.28 7.76 -2.39 -0.02 1.26 16 48 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -89.19 389.40 3.19 -86.00 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.23 Total: 24.08 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 7.39 Total: 15.72 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -6.35 Total: -133.60 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -0.10 Total: -42.10 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -89.19 3.19 -86.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103905423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.620 kcal (2) G-P(sol) polarization free energy of solvation -89.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds