Wall clock time and date at job start Tue Mar 31 2020 11:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.52449 * 2 1 4 4 C 1.53189 * 109.51088 * 239.92428 * 2 1 3 5 5 N 1.46921 * 108.77048 * 294.69636 * 4 2 1 6 6 C 1.34775 * 120.63675 * 126.39859 * 5 4 2 7 7 O 1.21287 * 119.99662 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00542 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47379 * 180.02562 * 8 6 5 10 10 O 1.21280 * 119.99669 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99978 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99909 * 179.97438 * 11 9 8 13 13 C 1.46495 * 120.00103 * 0.02562 * 11 9 8 14 14 C 1.46931 * 118.73609 * 306.38742 * 5 4 2 15 15 C 1.53193 * 108.77779 * 53.60176 * 14 5 4 16 16 C 1.53038 * 109.31343 * 305.36678 * 15 14 5 17 17 H 1.09007 * 109.46104 * 301.36413 * 16 15 14 18 18 C 1.52993 * 109.46110 * 181.38791 * 16 15 14 19 19 N 1.46496 * 109.47551 * 64.96950 * 18 16 15 20 20 C 1.36934 * 120.00548 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99288 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00389 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 H 1.09000 * 109.47061 * 299.91818 * 1 2 3 29 29 H 1.08994 * 109.47404 * 59.92157 * 1 2 3 30 30 H 1.09007 * 109.47047 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.59990 * 174.90685 * 4 2 1 32 32 H 1.09003 * 109.58649 * 54.47952 * 4 2 1 33 33 H 1.09002 * 109.47179 * 300.00810 * 8 6 5 34 34 H 1.09002 * 109.46781 * 60.00026 * 8 6 5 35 35 H 1.09000 * 109.47010 * 90.00019 * 12 11 9 36 36 H 1.08994 * 109.47147 * 210.00409 * 12 11 9 37 37 H 1.09007 * 109.47037 * 330.00291 * 12 11 9 38 38 H 1.09001 * 109.47192 * 89.99768 * 13 11 9 39 39 H 1.08999 * 109.47100 * 209.99387 * 13 11 9 40 40 H 1.09003 * 109.47058 * 329.99942 * 13 11 9 41 41 H 1.08999 * 109.58281 * 293.81510 * 14 5 4 42 42 H 1.09001 * 109.58634 * 173.38950 * 14 5 4 43 43 H 1.08996 * 109.49439 * 185.41533 * 15 14 5 44 44 H 1.08999 * 109.49759 * 65.32085 * 15 14 5 45 45 H 1.09004 * 109.46862 * 304.97149 * 18 16 15 46 46 H 1.09004 * 109.46998 * 184.97627 * 18 16 15 47 47 H 0.96999 * 119.99694 * 0.02562 * 19 18 16 48 48 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7236 -1.2495 5 7 1.6516 -2.1379 -1.1698 6 6 0.9748 -2.7217 -2.1785 7 8 0.6815 -2.0785 -3.1641 8 6 0.5825 -4.1734 -2.0820 9 6 -0.1580 -4.5778 -3.3306 10 8 -0.3481 -3.7670 -4.2123 11 7 -0.6083 -5.8407 -3.4679 12 6 -1.3286 -6.2337 -4.6815 13 6 -0.3782 -6.8202 -2.4031 14 6 2.0138 -2.9039 0.0307 15 6 1.5028 -2.1556 1.2659 16 6 2.0408 -0.7231 1.2484 17 1 3.1306 -0.7445 1.2351 18 6 1.5607 0.0170 2.4984 19 7 2.1472 -0.6035 3.6888 20 6 1.8593 -0.1072 4.9321 21 1 1.1993 0.7416 5.0351 22 6 2.4154 -0.6948 6.0600 23 7 2.1382 -0.2180 7.2551 24 14 3.5563 -2.1632 5.8818 25 1 2.7607 -3.4163 5.9258 26 1 4.2741 -2.0778 4.5847 27 1 4.5409 -2.1627 6.9935 28 1 -0.3633 0.5126 0.8907 29 1 -0.3634 0.5150 -0.8892 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1278 -0.6463 -1.2978 32 1 1.6012 -0.2728 -2.1389 33 1 1.4782 -4.7857 -1.9767 34 1 -0.0610 -4.3189 -1.2142 35 1 -0.6186 -6.6001 -5.4229 36 1 -2.0423 -7.0217 -4.4413 37 1 -1.8610 -5.3715 -5.0833 38 1 -1.2102 -6.7940 -1.6993 39 1 -0.3007 -7.8171 -2.8370 40 1 0.5474 -6.5783 -1.8806 41 1 3.0977 -3.0043 0.0867 42 1 1.5550 -3.8916 -0.0140 43 1 1.8477 -2.6628 2.1669 44 1 0.4130 -2.1352 1.2539 45 1 0.4737 -0.0380 2.5582 46 1 1.8691 1.0611 2.4434 47 1 2.7402 -1.3655 3.5963 48 1 2.5266 -0.6289 8.0433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185261434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:16 Heat of formation + Delta-G solvation = -48.954424 kcal Electronic energy + Delta-G solvation = -26948.653012 eV Core-core repulsion = 23232.361831 eV Total energy + Delta-G solvation = -3716.291182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83398 -39.69392 -37.92545 -35.76364 -35.04461 -33.56343 -32.01816 -31.09140 -30.69389 -28.27419 -27.31382 -26.84633 -25.79852 -23.58808 -23.03549 -21.47708 -20.57098 -19.25026 -18.43118 -17.99539 -17.37422 -16.60216 -16.49529 -16.14660 -15.50201 -15.39677 -14.99400 -14.51320 -14.28662 -14.01517 -13.79838 -13.55584 -13.34775 -13.24590 -13.09538 -12.98740 -12.94290 -12.69532 -12.48797 -12.38260 -12.36329 -12.10549 -11.62704 -11.45310 -11.40527 -11.06172 -10.84156 -10.52030 -10.36003 -10.16384 -10.14711 -9.99355 -9.59919 -9.49193 -9.02451 -8.90515 -8.60828 -7.23606 -5.78438 -3.13642 2.36173 2.46720 2.62405 3.04320 3.32959 3.34213 3.41720 4.09850 4.28562 4.56142 4.58980 4.66929 4.79287 4.82317 4.87012 4.88574 4.94227 4.99824 5.02603 5.16459 5.21450 5.23291 5.32196 5.45101 5.47743 5.53853 5.61493 5.74039 5.74298 5.78479 5.85545 5.93437 6.07467 6.13040 6.18105 6.29708 6.31384 6.40060 6.55134 6.70224 6.82724 6.95313 7.32873 7.91881 7.98610 8.19184 8.40754 9.20079 9.92235 10.12354 11.40238 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.003089 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.796637 B = 9061.781000 C = 9993.186230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.119 3.881 5 N -0.609 5.609 6 C 0.515 3.485 7 O -0.501 6.501 8 C -0.164 4.164 9 C 0.512 3.488 10 O -0.491 6.491 11 N -0.630 5.630 12 C 0.087 3.913 13 C 0.076 3.924 14 C 0.104 3.896 15 C -0.131 4.131 16 C -0.092 4.092 17 H 0.071 0.929 18 C 0.162 3.838 19 N -0.755 5.755 20 C -0.242 4.242 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.277 1.277 27 H -0.291 1.291 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.030 0.970 46 H 0.026 0.974 47 H 0.359 0.641 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 -14.145 -20.902 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.003 4.003 5 N -0.345 5.345 6 C 0.301 3.699 7 O -0.374 6.374 8 C -0.207 4.207 9 C 0.298 3.702 10 O -0.363 6.363 11 N -0.367 5.367 12 C -0.055 4.055 13 C -0.067 4.067 14 C -0.018 4.018 15 C -0.169 4.169 16 C -0.111 4.111 17 H 0.089 0.911 18 C 0.035 3.965 19 N -0.401 5.401 20 C -0.372 4.372 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.583 5.583 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.204 1.204 27 H -0.218 1.218 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.048 0.952 46 H 0.044 0.956 47 H 0.192 0.808 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.312 -13.188 -21.774 25.671 hybrid contribution 0.931 -1.327 0.439 1.679 sum -2.381 -14.515 -21.335 25.914 Atomic orbital electron populations 1.21856 0.94765 1.01913 1.01667 1.21461 0.96773 0.99542 0.93956 0.89869 1.21655 0.99274 0.80139 0.99253 1.48082 1.56621 1.11715 1.18036 1.19874 0.78555 0.88434 0.83086 1.90837 1.52414 1.64210 1.29957 1.21677 1.03092 0.96770 0.99155 1.20077 0.80004 0.81626 0.88489 1.90857 1.54481 1.49473 1.41498 1.47781 1.58189 1.10647 1.20061 1.21604 0.96274 1.01249 0.86400 1.21844 1.01813 0.92612 0.90477 1.21855 1.00494 0.94815 0.84674 1.22000 1.01827 0.96161 0.96881 1.21354 1.00214 0.94649 0.94914 0.91086 1.20699 0.96314 0.94895 0.84576 1.42733 1.57284 1.37478 1.02627 1.19069 1.23970 1.12238 0.81907 0.89307 1.24683 1.00308 0.99208 0.95127 1.69705 1.48397 1.43195 0.97045 0.86545 0.81253 0.83800 0.76922 1.21096 1.20358 1.21784 0.91858 0.93168 0.92717 0.91637 0.89050 0.86262 0.86088 0.92845 0.91274 0.90486 0.92271 0.90855 0.90869 0.91162 0.90190 0.90141 0.90888 0.95204 0.95635 0.80769 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.38 37.15 0.31 -1.53 16 2 C -0.10 -1.19 2.72 -90.50 -0.25 -1.44 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.40 5.83 -3.71 -0.02 1.38 16 5 N -0.61 -6.87 2.41 -172.77 -0.42 -7.29 16 6 C 0.51 6.60 7.69 -10.99 -0.08 6.51 16 7 O -0.50 -8.77 13.59 -18.97 -0.26 -9.03 16 8 C -0.16 -1.45 3.09 -29.04 -0.09 -1.54 16 9 C 0.51 5.90 7.67 -10.99 -0.08 5.82 16 10 O -0.49 -8.18 13.76 -18.96 -0.26 -8.44 16 11 N -0.63 -5.11 3.27 -189.52 -0.62 -5.73 16 12 C 0.09 0.62 10.44 59.85 0.62 1.24 16 13 C 0.08 0.31 10.24 59.84 0.61 0.93 16 14 C 0.10 0.99 6.34 -3.71 -0.02 0.96 16 15 C -0.13 -1.60 4.91 -26.61 -0.13 -1.74 16 16 C -0.09 -1.28 1.96 -90.58 -0.18 -1.46 16 17 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 18 C 0.16 2.97 5.19 -4.05 -0.02 2.95 16 19 N -0.76 -17.18 5.12 -59.91 -0.31 -17.49 16 20 C -0.24 -6.73 10.47 -15.06 -0.16 -6.89 16 21 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 23 N -0.94 -29.11 13.97 55.49 0.78 -28.34 16 24 Si 0.88 21.39 27.74 -169.99 -4.71 16.67 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.71 5.97 -51.92 -0.31 0.40 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.20 7.01 -51.93 -0.36 0.83 16 33 H 0.12 0.69 7.20 -51.93 -0.37 0.31 16 34 H 0.12 0.78 7.66 -51.93 -0.40 0.39 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 37 H 0.08 0.69 7.42 -51.92 -0.39 0.31 16 38 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16 40 H 0.07 0.21 6.44 -51.93 -0.33 -0.12 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.53 5.93 -51.93 -0.31 0.23 16 43 H 0.08 1.09 7.15 -51.93 -0.37 0.72 16 44 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 45 H 0.03 0.56 6.74 -51.93 -0.35 0.22 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.36 7.85 4.71 -40.82 -0.19 7.65 16 48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -37.36 367.80 -7.71 -45.07 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.87 Total: 3.86 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 0.42 Total: 5.17 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.57 Total: -58.85 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.52 Total: -17.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.36 -7.71 -45.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185261434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.887 kcal (2) G-P(sol) polarization free energy of solvation -37.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds