Wall clock time and date at job start Tue Mar 31 2020 11:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47422 * 2 1 4 4 C 1.53003 * 109.46937 * 239.99924 * 2 1 3 5 5 C 1.52998 * 109.47495 * 175.00152 * 4 2 1 6 6 N 1.46893 * 109.47369 * 180.02562 * 5 4 2 7 7 C 1.46900 * 111.00139 * 66.04623 * 6 5 4 8 8 C 1.46901 * 111.00022 * 190.00008 * 6 5 4 9 9 N 1.46501 * 109.47405 * 120.00450 * 2 1 3 10 10 C 1.34769 * 120.00011 * 274.99874 * 9 2 1 11 11 O 1.21358 * 119.99800 * 359.97438 * 10 9 2 12 12 C 1.49453 * 120.00473 * 179.97438 * 10 9 2 13 13 O 1.21351 * 119.99369 * 5.09242 * 12 10 9 14 14 N 1.34769 * 120.00243 * 185.08548 * 12 10 9 15 15 C 1.46497 * 120.00011 * 185.03773 * 14 12 10 16 16 C 1.53005 * 109.47129 * 184.78311 * 15 14 12 17 17 C 1.50703 * 115.54676 * 294.81585 * 16 15 14 18 18 H 1.07998 * 119.99578 * 95.20301 * 17 16 15 19 19 C 1.37876 * 120.00032 * 274.92215 * 17 16 15 20 20 N 1.31513 * 120.00087 * 355.42383 * 19 17 16 21 21 Si 1.86797 * 119.99764 * 175.41970 * 19 17 16 22 22 H 1.48506 * 109.47089 * 90.00605 * 21 19 17 23 23 H 1.48500 * 109.47109 * 210.00447 * 21 19 17 24 24 H 1.48505 * 109.47313 * 330.00182 * 21 19 17 25 25 C 1.52992 * 117.50017 * 80.49188 * 16 15 14 26 26 C 1.52998 * 117.49741 * 149.15238 * 16 15 14 27 27 H 1.08994 * 109.47630 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47007 * 300.00374 * 1 2 3 29 29 H 1.09002 * 109.47264 * 59.99225 * 1 2 3 30 30 H 1.09004 * 109.47306 * 295.00716 * 4 2 1 31 31 H 1.09006 * 109.46677 * 55.00216 * 4 2 1 32 32 H 1.09004 * 109.47305 * 300.00565 * 5 4 2 33 33 H 1.08997 * 109.46756 * 59.99848 * 5 4 2 34 34 H 1.08994 * 109.47064 * 60.00339 * 7 6 5 35 35 H 1.09004 * 109.46829 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47291 * 299.99862 * 7 6 5 37 37 H 1.09003 * 109.47210 * 60.00441 * 8 6 5 38 38 H 1.09005 * 109.47345 * 179.97438 * 8 6 5 39 39 H 1.08993 * 109.47471 * 299.99802 * 8 6 5 40 40 H 0.97004 * 120.00150 * 94.99196 * 9 2 1 41 41 H 0.97000 * 120.00088 * 5.04363 * 14 12 10 42 42 H 1.09004 * 109.47290 * 64.78043 * 15 14 12 43 43 H 1.09002 * 109.47245 * 304.78204 * 15 14 12 44 44 H 0.97005 * 120.00163 * 184.99518 * 20 19 17 45 45 H 1.09001 * 117.49686 * 215.00072 * 25 16 15 46 46 H 1.09004 * 117.49963 * 0.02562 * 25 16 15 47 47 H 1.09001 * 117.50544 * 359.96959 * 26 16 15 48 48 H 1.09001 * 117.50141 * 144.97625 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6134 -1.3138 6 7 4.0542 -1.3054 -2.5135 7 6 3.6037 -0.6244 -3.7347 8 6 5.5178 -1.4295 -2.4894 9 7 2.0183 -0.6907 1.1961 10 6 2.1471 -0.0185 2.3570 11 8 1.8589 1.1591 2.4115 12 6 2.6448 -0.7231 3.5775 13 8 3.0203 -1.8746 3.5024 14 7 2.6768 -0.0797 4.7612 15 6 3.2662 -0.7313 5.9334 16 6 3.0695 0.1571 7.1635 17 6 3.7927 1.4789 7.1330 18 1 3.2801 2.3671 6.7944 19 6 5.1069 1.5553 7.5427 20 7 5.7020 0.4953 8.0445 21 14 6.0423 3.1645 7.3851 22 1 5.8688 3.9616 8.6261 23 1 7.4849 2.8802 7.1771 24 1 5.5168 3.9311 6.2268 25 6 1.7057 0.1137 7.8554 26 6 2.9221 -0.5364 8.5193 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.7514 -1.7716 -1.2057 31 1 1.6052 -0.2617 -2.1370 32 1 3.8532 0.4368 -1.3574 33 1 3.9993 -1.0730 -0.4261 34 1 3.9827 0.3975 -3.7417 35 1 3.9798 -1.1578 -4.6079 36 1 2.5141 -0.6082 -3.7608 37 1 5.8197 -1.9986 -1.6101 38 1 5.8536 -1.9458 -3.3887 39 1 5.9661 -0.4368 -2.4512 40 1 2.2490 -1.6319 1.1525 41 1 2.3094 0.8148 4.8371 42 1 4.3317 -0.8877 5.7648 43 1 2.7795 -1.6926 6.0979 44 1 6.6019 0.5667 8.3994 45 1 1.3314 1.0413 8.2885 46 1 0.9486 -0.5480 7.4345 47 1 2.9647 -1.6254 8.5350 48 1 3.3483 -0.0367 9.3892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327738146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:59 Heat of formation + Delta-G solvation = -51.204709 kcal Electronic energy + Delta-G solvation = -26122.653673 eV Core-core repulsion = 22406.264912 eV Total energy + Delta-G solvation = -3716.388761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.36770 -38.62601 -37.84437 -36.71471 -35.95240 -33.45968 -31.97883 -31.77796 -29.49544 -27.89534 -27.07669 -25.50249 -24.96523 -23.64385 -21.54889 -21.17522 -20.84784 -19.96329 -19.51942 -18.01047 -16.82299 -16.18896 -15.85947 -15.75144 -15.42686 -15.35477 -15.07685 -14.69115 -14.53865 -14.09297 -13.70178 -13.63617 -13.40398 -13.26021 -12.80417 -12.68043 -12.65343 -12.34054 -12.14387 -11.98136 -11.87930 -11.62956 -11.41419 -11.26384 -11.20491 -11.00313 -10.97999 -10.95158 -10.53300 -10.25217 -9.61764 -9.25145 -9.19175 -9.09190 -8.68960 -8.53615 -8.38724 -8.18282 -6.09267 -4.18919 1.79936 2.69926 3.26104 3.33962 3.37897 3.59008 3.61017 4.04940 4.35434 4.54988 4.66249 4.73102 4.87984 4.94575 5.05214 5.14056 5.16167 5.18403 5.29425 5.32957 5.34251 5.36466 5.50376 5.57747 5.59487 5.62892 5.75583 5.89104 5.95918 6.03330 6.28393 6.34140 6.39965 6.47636 6.66703 6.68834 6.70123 6.74977 7.00287 7.08294 7.25222 7.33221 7.49972 7.80604 7.87880 8.16451 8.31255 8.53073 8.83269 9.48766 10.97731 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.003022 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.259200 B = 9261.905798 C =10057.582301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.123 4.123 5 C 0.050 3.950 6 N -0.548 5.548 7 C 0.020 3.980 8 C 0.023 3.977 9 N -0.702 5.702 10 C 0.509 3.491 11 O -0.519 6.519 12 C 0.494 3.506 13 O -0.541 6.541 14 N -0.666 5.666 15 C 0.159 3.841 16 C 0.021 3.979 17 C -0.501 4.501 18 H 0.062 0.938 19 C 0.074 3.926 20 N -0.876 5.876 21 Si 0.890 3.110 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.210 4.210 26 C -0.139 4.139 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.412 0.588 41 H 0.413 0.587 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.262 0.738 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 -3.214 -19.563 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.078 4.078 6 N -0.271 5.271 7 C -0.129 4.129 8 C -0.126 4.126 9 N -0.357 5.357 10 C 0.290 3.710 11 O -0.394 6.394 12 C 0.273 3.727 13 O -0.420 6.420 14 N -0.316 5.316 15 C 0.037 3.963 16 C 0.020 3.980 17 C -0.538 4.538 18 H 0.080 0.920 19 C -0.131 4.131 20 N -0.512 5.512 21 Si 0.717 3.283 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.196 1.196 25 C -0.247 4.247 26 C -0.178 4.178 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.248 0.752 41 H 0.250 0.750 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.305 -3.715 -19.536 20.862 hybrid contribution 0.983 1.640 0.042 1.913 sum -5.322 -2.075 -19.494 20.314 Atomic orbital electron populations 1.22167 0.94705 1.02467 1.02790 1.21036 0.94399 0.97627 0.83361 0.89170 1.21911 0.95123 1.02114 0.96948 1.22210 0.95474 0.96889 0.93230 1.61995 1.11269 1.51459 1.02414 1.22453 1.01378 0.96527 0.92495 1.22396 0.86933 1.00246 1.02977 1.45887 1.66094 1.14898 1.08830 1.20500 0.78460 0.87083 0.84950 1.90753 1.48180 1.15467 1.85013 1.19969 0.81086 0.86800 0.84816 1.90713 1.48955 1.16654 1.85675 1.45891 1.57083 1.20408 1.08223 1.21207 0.97818 0.93759 0.83527 1.19028 0.93752 0.96243 0.88940 1.20387 0.95699 0.92231 1.45523 0.92014 1.24984 0.97300 0.96225 0.94543 1.69987 1.14121 1.28354 1.38693 0.86620 0.79211 0.83771 0.78655 1.20635 1.21172 1.19641 1.23032 0.91828 1.01760 1.08099 1.22475 0.99873 0.96751 0.98666 0.92152 0.91704 0.91523 0.90136 0.90162 0.94542 0.90170 0.95642 0.91488 0.91080 0.91039 0.91357 0.95593 0.75205 0.75031 0.90834 0.93412 0.92858 0.90225 0.91644 0.91733 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.15 0.35 -1.11 16 2 C 0.14 1.40 2.57 -67.93 -0.17 1.22 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 4 C -0.12 -0.97 4.68 -26.73 -0.13 -1.10 16 5 C 0.05 0.46 4.84 -3.83 -0.02 0.45 16 6 N -0.55 -4.92 5.02 -251.26 -1.26 -6.18 16 7 C 0.02 0.14 9.32 60.06 0.56 0.70 16 8 C 0.02 0.19 9.57 60.07 0.57 0.76 16 9 N -0.70 -8.61 4.52 -54.24 -0.25 -8.85 16 10 C 0.51 8.20 7.85 -11.59 -0.09 8.11 16 11 O -0.52 -9.40 16.16 5.49 0.09 -9.31 16 12 C 0.49 9.21 7.88 -11.59 -0.09 9.12 16 13 O -0.54 -10.89 16.47 5.50 0.09 -10.80 16 14 N -0.67 -13.34 5.46 -60.73 -0.33 -13.67 16 15 C 0.16 3.54 5.53 -4.04 -0.02 3.52 16 16 C 0.02 0.49 1.47 -155.66 -0.23 0.27 16 17 C -0.50 -12.99 8.59 -34.44 -0.30 -13.29 16 18 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 19 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 20 N -0.88 -24.05 12.65 55.43 0.70 -23.35 16 21 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 25 C -0.21 -4.38 9.96 -26.70 -0.27 -4.64 16 26 C -0.14 -3.16 9.14 -26.70 -0.24 -3.40 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.53 6.55 -51.93 -0.34 0.19 16 32 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.08 0.84 7.67 -51.93 -0.40 0.45 16 34 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.07 0.45 6.47 -51.93 -0.34 0.11 16 37 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 38 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.41 4.69 8.08 -40.82 -0.33 4.36 16 41 H 0.41 8.22 7.84 -40.82 -0.32 7.90 16 42 H 0.07 1.83 8.14 -51.93 -0.42 1.40 16 43 H 0.05 1.02 8.05 -51.93 -0.42 0.61 16 44 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 45 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -29.21 397.90 -8.57 -37.78 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -8.42 Total: 10.19 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.17 Total: 2.46 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -1.14 Total: -52.05 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.18 Total: -20.12 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.21 -8.57 -37.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327738146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.421 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds