Wall clock time and date at job start Tue Mar 31 2020 11:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47422 * 2 1 4 4 C 1.53003 * 109.46937 * 239.99924 * 2 1 3 5 5 C 1.52998 * 109.47495 * 175.00152 * 4 2 1 6 6 N 1.46893 * 109.47369 * 180.02562 * 5 4 2 7 7 C 1.46900 * 111.00139 * 66.04623 * 6 5 4 8 8 C 1.46901 * 111.00022 * 190.00008 * 6 5 4 9 9 N 1.46501 * 109.47405 * 120.00450 * 2 1 3 10 10 C 1.34769 * 120.00011 * 274.99874 * 9 2 1 11 11 O 1.21358 * 119.99800 * 359.97438 * 10 9 2 12 12 C 1.49453 * 120.00473 * 179.97438 * 10 9 2 13 13 O 1.21351 * 119.99369 * 5.09242 * 12 10 9 14 14 N 1.34769 * 120.00243 * 185.08548 * 12 10 9 15 15 C 1.46497 * 120.00011 * 185.03773 * 14 12 10 16 16 C 1.53005 * 109.47129 * 184.78311 * 15 14 12 17 17 C 1.50703 * 115.54676 * 294.81585 * 16 15 14 18 18 H 1.07998 * 119.99578 * 95.20301 * 17 16 15 19 19 C 1.37876 * 120.00032 * 274.92215 * 17 16 15 20 20 N 1.31513 * 120.00087 * 355.42383 * 19 17 16 21 21 Si 1.86797 * 119.99764 * 175.41970 * 19 17 16 22 22 H 1.48506 * 109.47089 * 90.00605 * 21 19 17 23 23 H 1.48500 * 109.47109 * 210.00447 * 21 19 17 24 24 H 1.48505 * 109.47313 * 330.00182 * 21 19 17 25 25 C 1.52992 * 117.50017 * 80.49188 * 16 15 14 26 26 C 1.52998 * 117.49741 * 149.15238 * 16 15 14 27 27 H 1.08994 * 109.47630 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47007 * 300.00374 * 1 2 3 29 29 H 1.09002 * 109.47264 * 59.99225 * 1 2 3 30 30 H 1.09004 * 109.47306 * 295.00716 * 4 2 1 31 31 H 1.09006 * 109.46677 * 55.00216 * 4 2 1 32 32 H 1.09004 * 109.47305 * 300.00565 * 5 4 2 33 33 H 1.08997 * 109.46756 * 59.99848 * 5 4 2 34 34 H 1.08994 * 109.47064 * 60.00339 * 7 6 5 35 35 H 1.09004 * 109.46829 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47291 * 299.99862 * 7 6 5 37 37 H 1.09003 * 109.47210 * 60.00441 * 8 6 5 38 38 H 1.09005 * 109.47345 * 179.97438 * 8 6 5 39 39 H 1.08993 * 109.47471 * 299.99802 * 8 6 5 40 40 H 0.97004 * 120.00150 * 94.99196 * 9 2 1 41 41 H 0.97000 * 120.00088 * 5.04363 * 14 12 10 42 42 H 1.09004 * 109.47290 * 64.78043 * 15 14 12 43 43 H 1.09002 * 109.47245 * 304.78204 * 15 14 12 44 44 H 0.97005 * 120.00163 * 184.99518 * 20 19 17 45 45 H 1.09001 * 117.49686 * 215.00072 * 25 16 15 46 46 H 1.09004 * 117.49963 * 0.02562 * 25 16 15 47 47 H 1.09001 * 117.50544 * 359.96959 * 26 16 15 48 48 H 1.09001 * 117.50141 * 144.97625 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6134 -1.3138 6 7 4.0542 -1.3054 -2.5135 7 6 3.6037 -0.6244 -3.7347 8 6 5.5178 -1.4295 -2.4894 9 7 2.0183 -0.6907 1.1961 10 6 2.1471 -0.0185 2.3570 11 8 1.8589 1.1591 2.4115 12 6 2.6448 -0.7231 3.5775 13 8 3.0203 -1.8746 3.5024 14 7 2.6768 -0.0797 4.7612 15 6 3.2662 -0.7313 5.9334 16 6 3.0695 0.1571 7.1635 17 6 3.7927 1.4789 7.1330 18 1 3.2801 2.3671 6.7944 19 6 5.1069 1.5553 7.5427 20 7 5.7020 0.4953 8.0445 21 14 6.0423 3.1645 7.3851 22 1 5.8688 3.9616 8.6261 23 1 7.4849 2.8802 7.1771 24 1 5.5168 3.9311 6.2268 25 6 1.7057 0.1137 7.8554 26 6 2.9221 -0.5364 8.5193 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.7514 -1.7716 -1.2057 31 1 1.6052 -0.2617 -2.1370 32 1 3.8532 0.4368 -1.3574 33 1 3.9993 -1.0730 -0.4261 34 1 3.9827 0.3975 -3.7417 35 1 3.9798 -1.1578 -4.6079 36 1 2.5141 -0.6082 -3.7608 37 1 5.8197 -1.9986 -1.6101 38 1 5.8536 -1.9458 -3.3887 39 1 5.9661 -0.4368 -2.4512 40 1 2.2490 -1.6319 1.1525 41 1 2.3094 0.8148 4.8371 42 1 4.3317 -0.8877 5.7648 43 1 2.7795 -1.6926 6.0979 44 1 6.6019 0.5667 8.3994 45 1 1.3314 1.0413 8.2885 46 1 0.9486 -0.5480 7.4345 47 1 2.9647 -1.6254 8.5350 48 1 3.3483 -0.0367 9.3892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327738146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:58 Heat of formation + Delta-G solvation = -71.680390 kcal Electronic energy + Delta-G solvation = -26123.541566 eV Core-core repulsion = 22406.264912 eV Total energy + Delta-G solvation = -3717.276654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.70930 -39.92370 -38.77783 -38.45870 -36.93416 -35.06786 -33.97240 -32.79061 -30.23603 -28.74369 -28.48382 -27.42827 -25.81012 -24.90998 -22.94720 -22.32204 -21.71165 -21.43429 -21.20117 -19.49904 -18.11522 -17.92944 -17.05711 -16.86226 -16.61404 -16.45905 -16.22652 -16.13474 -15.72777 -15.62973 -15.06160 -14.92176 -14.44282 -14.35296 -14.15329 -13.78795 -13.59894 -13.48145 -13.26749 -13.08777 -12.96384 -12.83898 -12.78630 -12.71546 -12.59347 -12.39199 -12.09604 -12.01935 -11.95459 -11.71013 -11.42481 -10.98676 -10.72254 -10.46138 -10.30716 -10.11396 -9.96480 -9.36724 -8.11554 -6.25260 0.39398 1.39662 1.40403 1.43398 1.51551 2.18632 2.40805 2.72723 2.92747 3.15986 3.43492 3.60361 3.83916 3.94072 4.00831 4.19426 4.28376 4.37368 4.40943 4.50766 4.51150 4.61949 4.62086 4.68105 4.69482 4.71178 4.78513 4.87882 4.91696 4.97878 4.98399 5.01681 5.05530 5.19440 5.27993 5.29304 5.34274 5.38837 5.52415 5.67954 5.76296 6.00807 6.02881 6.07215 6.35057 6.47581 6.79300 6.82952 7.01513 7.44460 8.94991 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.003022 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.259200 B = 9261.905798 C =10057.582301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.110 4.110 5 C 0.050 3.950 6 N -0.556 5.556 7 C 0.018 3.982 8 C 0.021 3.979 9 N -0.683 5.683 10 C 0.515 3.485 11 O -0.542 6.542 12 C 0.494 3.506 13 O -0.556 6.556 14 N -0.670 5.670 15 C 0.175 3.825 16 C -0.003 4.003 17 C -0.509 4.509 18 H 0.057 0.943 19 C 0.029 3.971 20 N -0.903 5.903 21 Si 0.945 3.055 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.270 1.270 25 C -0.181 4.181 26 C -0.146 4.146 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.022 0.978 40 H 0.418 0.582 41 H 0.414 0.586 42 H 0.039 0.961 43 H 0.055 0.945 44 H 0.260 0.740 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 -3.219 -21.533 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.148 4.148 5 C -0.078 4.078 6 N -0.280 5.280 7 C -0.130 4.130 8 C -0.127 4.127 9 N -0.337 5.337 10 C 0.295 3.705 11 O -0.419 6.419 12 C 0.275 3.725 13 O -0.436 6.436 14 N -0.320 5.320 15 C 0.052 3.948 16 C -0.003 4.003 17 C -0.547 4.547 18 H 0.076 0.924 19 C -0.172 4.172 20 N -0.540 5.540 21 Si 0.771 3.229 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.195 1.195 25 C -0.218 4.218 26 C -0.184 4.184 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.040 0.960 40 H 0.255 0.745 41 H 0.251 0.749 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.665 -3.733 -21.545 23.171 hybrid contribution 1.388 1.599 0.581 2.196 sum -6.277 -2.133 -20.964 21.988 Atomic orbital electron populations 1.22134 0.93365 1.03238 1.02906 1.21254 0.95351 0.96994 0.82888 0.90444 1.21835 0.93997 1.02467 0.96465 1.22171 0.96426 0.96198 0.93027 1.62030 1.11474 1.51682 1.02833 1.22528 1.02159 0.96366 0.91927 1.22423 0.86884 1.00093 1.03313 1.45917 1.64327 1.15075 1.08334 1.19979 0.78795 0.86659 0.85040 1.90750 1.49712 1.16172 1.85262 1.20434 0.80279 0.86593 0.85236 1.90698 1.49465 1.17431 1.86010 1.45804 1.57394 1.20468 1.08308 1.20820 0.95986 0.94033 0.83995 1.19065 0.95833 0.95774 0.89664 1.20659 0.96024 0.93217 1.44761 0.92449 1.25627 0.98194 0.98815 0.94608 1.70085 1.14272 1.29859 1.39813 0.85754 0.77806 0.80685 0.78637 1.20050 1.21361 1.19512 1.23021 0.91081 1.01876 1.05821 1.22396 1.01261 0.97236 0.97484 0.91037 0.93905 0.89108 0.89338 0.87960 0.95425 0.91873 0.95848 0.90563 0.89875 0.91796 0.90039 0.95960 0.74497 0.74926 0.94234 0.92670 0.93059 0.89921 0.89187 0.90636 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.48 71.98 0.68 -1.78 16 2 C 0.14 2.51 2.57 44.99 0.12 2.62 16 3 H 0.08 1.66 7.58 -2.39 -0.02 1.64 16 4 C -0.11 -1.47 4.68 30.59 0.14 -1.32 16 5 C 0.05 0.87 4.84 86.30 0.42 1.29 16 6 N -0.56 -9.08 5.02 -948.86 -4.76 -13.84 16 7 C 0.02 0.22 9.32 127.69 1.19 1.41 16 8 C 0.02 0.33 9.57 127.69 1.22 1.55 16 9 N -0.68 -15.96 4.52 -443.86 -2.01 -17.96 16 10 C 0.52 16.33 7.85 87.27 0.69 17.01 16 11 O -0.54 -19.44 16.16 -3.27 -0.05 -19.49 16 12 C 0.49 18.35 7.88 87.27 0.69 19.04 16 13 O -0.56 -22.28 16.47 -3.25 -0.05 -22.33 16 14 N -0.67 -26.85 5.46 -464.41 -2.54 -29.39 16 15 C 0.18 7.83 5.53 86.38 0.48 8.31 16 16 C 0.00 -0.12 1.47 -52.93 -0.08 -0.20 16 17 C -0.51 -26.56 8.59 25.60 0.22 -26.34 16 18 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 19 C 0.03 1.53 5.43 84.65 0.46 1.99 16 20 N -0.90 -50.48 12.65 21.45 0.27 -50.21 16 21 Si 0.94 42.96 29.54 68.60 2.03 44.99 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C -0.18 -7.29 9.96 30.61 0.30 -6.98 16 26 C -0.15 -6.57 9.14 30.62 0.28 -6.29 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 0.99 6.55 -2.38 -0.02 0.97 16 32 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 33 H 0.06 1.30 7.67 -2.39 -0.02 1.28 16 34 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.08 0.78 8.12 -2.38 -0.02 0.76 16 36 H 0.08 0.79 6.47 -2.39 -0.02 0.77 16 37 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 38 H 0.08 1.04 8.12 -2.38 -0.02 1.02 16 39 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.42 8.95 8.08 -92.71 -0.75 8.20 16 41 H 0.41 16.48 7.84 -92.71 -0.73 15.75 16 42 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.06 2.35 8.05 -2.39 -0.02 2.34 16 44 H 0.26 14.01 8.32 -92.70 -0.77 13.24 16 45 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 46 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 47 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -62.53 397.90 -0.83 -63.36 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.53 Total: 34.56 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.81 Total: 10.32 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -9.03 Total: -111.41 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.11 Total: -41.82 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -62.53 -0.83 -63.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327738146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.320 kcal (2) G-P(sol) polarization free energy of solvation -62.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds