Wall clock time and date at job start Tue Mar 31 2020 11:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47122 * 2 1 4 4 N 1.46507 * 109.47151 * 120.00072 * 2 1 3 5 5 C 1.34776 * 119.99550 * 274.99577 * 4 2 1 6 6 O 1.21278 * 120.00196 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99853 * 179.72596 * 5 4 2 8 8 C 1.52996 * 109.46937 * 300.27724 * 7 5 4 9 9 C 1.53004 * 109.47123 * 60.27695 * 7 5 4 10 10 C 1.50696 * 109.47421 * 180.27577 * 7 5 4 11 11 N 1.34769 * 120.00190 * 179.97438 * 10 7 5 12 12 O 1.21283 * 119.99887 * 0.02562 * 10 7 5 13 13 C 1.53007 * 109.46836 * 239.99567 * 2 1 3 14 14 C 1.53044 * 109.45585 * 180.02562 * 13 2 1 15 15 C 1.53193 * 109.30772 * 178.60642 * 14 13 2 16 16 N 1.46919 * 108.76985 * 54.65283 * 15 14 13 17 17 C 1.36936 * 120.63155 * 126.40244 * 16 15 14 18 18 H 1.07997 * 120.00277 * 332.61489 * 17 16 15 19 19 C 1.38813 * 120.00007 * 152.60714 * 17 16 15 20 20 N 1.31623 * 119.99769 * 159.34543 * 19 17 16 21 21 Si 1.86796 * 120.00134 * 339.35099 * 19 17 16 22 22 H 1.48502 * 109.47213 * 92.93826 * 21 19 17 23 23 H 1.48501 * 109.47121 * 212.93939 * 21 19 17 24 24 H 1.48498 * 109.47122 * 332.94138 * 21 19 17 25 25 C 1.46925 * 118.74209 * 306.38512 * 16 15 14 26 26 C 1.53038 * 109.45672 * 59.97500 * 13 2 1 27 27 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46815 * 299.99981 * 1 2 3 29 29 H 1.08999 * 109.47403 * 60.00276 * 1 2 3 30 30 H 0.96996 * 120.00228 * 95.00342 * 4 2 1 31 31 H 1.09007 * 109.47620 * 60.00001 * 8 7 5 32 32 H 1.09009 * 109.47194 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47542 * 299.99643 * 8 7 5 34 34 H 1.08997 * 109.47282 * 59.99941 * 9 7 5 35 35 H 1.08996 * 109.46841 * 180.02562 * 9 7 5 36 36 H 1.08997 * 109.46926 * 300.00245 * 9 7 5 37 37 H 0.96997 * 120.00439 * 0.02562 * 11 10 7 38 38 H 0.97007 * 120.00055 * 180.02562 * 11 10 7 39 39 H 1.08991 * 109.46054 * 300.00036 * 13 2 1 40 40 H 1.09000 * 109.49513 * 298.56457 * 14 13 2 41 41 H 1.08992 * 109.49724 * 58.66823 * 14 13 2 42 42 H 1.09006 * 109.59266 * 294.86406 * 15 14 13 43 43 H 1.09000 * 109.70386 * 174.50845 * 15 14 13 44 44 H 0.97007 * 119.99508 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.58623 * 293.82571 * 25 16 15 46 46 H 1.08998 * 109.71138 * 173.46310 * 25 16 15 47 47 H 1.08999 * 109.50011 * 301.33167 * 26 13 2 48 48 H 1.09001 * 109.50163 * 61.40364 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1584 2.4116 7 6 2.6436 -0.7301 3.5891 8 6 1.6977 -1.8841 3.9273 9 6 4.0473 -1.2806 3.3292 10 6 2.6892 0.2369 4.7440 11 7 3.1044 -0.1803 5.9563 12 8 2.3513 1.3905 4.5827 13 6 2.0399 -0.7214 -1.2493 14 6 3.5703 -0.7218 -1.2486 15 6 4.0772 -1.4749 -2.4826 16 7 3.4746 -0.8772 -3.6818 17 6 4.2605 -0.4517 -4.7194 18 1 5.2757 -0.1342 -4.5330 19 6 3.7522 -0.4286 -6.0109 20 7 4.3152 0.3315 -6.9262 21 14 2.2692 -1.4761 -6.4499 22 1 1.0300 -0.6753 -6.2807 23 1 2.3801 -1.9243 -7.8613 24 1 2.2184 -2.6612 -5.5566 25 6 2.0128 -0.7449 -3.7470 26 6 1.5291 -0.0001 -2.4986 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.2491 -1.6318 1.1527 31 1 1.6647 -2.5836 3.0919 32 1 2.0570 -2.3993 4.8182 33 1 0.6977 -1.4920 4.1125 34 1 4.7211 -0.4584 3.0883 35 1 4.4061 -1.7958 4.2202 36 1 4.0143 -1.9800 2.4939 37 1 3.3743 -1.1030 6.0855 38 1 3.1334 0.4421 6.6998 39 1 1.6765 -1.7489 -1.2490 40 1 3.9344 0.3053 -1.2742 41 1 3.9336 -1.2148 -0.3471 42 1 3.7902 -2.5243 -2.4138 43 1 5.1627 -1.3961 -2.5411 44 1 3.9602 0.3474 -7.8288 45 1 1.5575 -1.7347 -3.7812 46 1 1.7338 -0.1833 -4.6385 47 1 0.4393 0.0205 -2.4868 48 1 1.9122 1.0202 -2.5120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677334463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:53 Heat of formation + Delta-G solvation = -63.171777 kcal Electronic energy + Delta-G solvation = -27429.826144 eV Core-core repulsion = 23712.918451 eV Total energy + Delta-G solvation = -3716.907692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96659 -39.15973 -37.92312 -35.47501 -35.33974 -33.42048 -32.64775 -31.29814 -30.36934 -29.18786 -27.90213 -25.53344 -24.70425 -23.29246 -22.67754 -21.74544 -20.53572 -19.92110 -19.22410 -18.09109 -16.95392 -16.74325 -16.29132 -15.78591 -15.47268 -15.18623 -14.55636 -14.35213 -14.19649 -14.14752 -13.89670 -13.66562 -13.39969 -12.96894 -12.86456 -12.74061 -12.66781 -12.59638 -12.54305 -12.27445 -11.98398 -11.85711 -11.66122 -11.31487 -11.19317 -10.80247 -10.47589 -10.44101 -10.18271 -10.10369 -9.91403 -9.84368 -9.68495 -9.44893 -9.30147 -8.95277 -8.59866 -6.95447 -5.93303 -3.28676 2.39414 2.70312 2.84625 3.32577 3.35243 3.48450 3.51269 4.25376 4.28229 4.52175 4.54147 4.66664 4.86085 4.97791 5.00022 5.12330 5.17439 5.20720 5.23174 5.24883 5.42344 5.50584 5.56047 5.62377 5.67443 5.75275 5.85138 5.89490 6.08882 6.09407 6.17844 6.22766 6.33200 6.43063 6.50765 6.54054 6.58890 6.66840 6.68944 6.73916 6.99863 7.01411 7.51392 7.98620 8.03892 8.30785 8.34810 8.96461 9.74120 10.12239 11.22878 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.003100 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.203672 B = 9029.498359 C = 9284.941691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.720 5.720 5 C 0.520 3.480 6 O -0.496 6.496 7 C -0.106 4.106 8 C -0.138 4.138 9 C -0.140 4.140 10 C 0.524 3.476 11 N -0.858 5.858 12 O -0.494 6.494 13 C -0.084 4.084 14 C -0.127 4.127 15 C 0.149 3.851 16 N -0.606 5.606 17 C -0.259 4.259 18 H 0.084 0.916 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.884 3.116 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.127 3.873 26 C -0.128 4.128 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.395 0.605 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.398 0.602 38 H 0.402 0.598 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.061 0.939 44 H 0.262 0.738 45 H 0.023 0.977 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -8.861 25.054 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.106 0.894 4 N -0.373 5.373 5 C 0.303 3.697 6 O -0.368 6.368 7 C -0.113 4.113 8 C -0.196 4.196 9 C -0.198 4.198 10 C 0.306 3.694 11 N -0.424 5.424 12 O -0.365 6.365 13 C -0.103 4.103 14 C -0.166 4.166 15 C 0.023 3.977 16 N -0.330 5.330 17 C -0.387 4.387 18 H 0.102 0.898 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.715 3.285 22 H -0.216 1.216 23 H -0.233 1.233 24 H -0.196 1.196 25 C 0.001 3.999 26 C -0.167 4.167 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.230 0.770 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.226 0.774 38 H 0.233 0.767 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.006 -7.176 24.592 26.102 hybrid contribution -0.557 -1.325 0.008 1.437 sum -5.562 -8.501 24.600 26.615 Atomic orbital electron populations 1.22210 0.95620 1.01811 1.02469 1.21101 0.93643 0.97695 0.83296 0.89437 1.46042 1.67907 1.13796 1.09538 1.19763 0.78775 0.87341 0.83847 1.90851 1.47151 1.14941 1.83865 1.20913 0.99482 0.96734 0.94134 1.21846 0.98884 0.95876 1.02996 1.21861 0.92721 1.01908 1.03279 1.19913 0.77220 0.88545 0.83709 1.43827 1.71141 1.15693 1.11757 1.90912 1.44681 1.18165 1.82732 1.21322 0.96591 0.99201 0.93233 1.22039 0.94305 1.01835 0.98444 1.20909 0.97178 0.93721 0.85872 1.44346 1.00979 1.70584 1.17059 1.18929 0.97853 1.36976 0.84958 0.89795 1.25284 0.97981 0.98782 0.95635 1.69848 1.42944 1.38580 1.03859 0.86932 0.82891 0.82189 0.76538 1.21625 1.23262 1.19644 1.21321 0.85086 0.96974 0.96512 1.22094 0.99177 1.00483 0.94975 0.92738 0.92576 0.91081 0.77030 0.90632 0.91012 0.91451 0.91200 0.91033 0.90497 0.77411 0.76683 0.91405 0.91842 0.92967 0.96243 0.92025 0.92804 0.95886 0.90956 0.92320 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.13 37.16 0.34 -1.66 16 2 C 0.15 1.94 2.16 -67.93 -0.15 1.79 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 4 N -0.72 -7.90 4.15 -53.80 -0.22 -8.13 16 5 C 0.52 6.73 6.44 -10.99 -0.07 6.66 16 6 O -0.50 -9.08 13.84 -18.96 -0.26 -9.34 16 7 C -0.11 -0.92 0.72 -156.81 -0.11 -1.04 16 8 C -0.14 -0.77 8.26 37.16 0.31 -0.46 16 9 C -0.14 -0.87 8.27 37.16 0.31 -0.57 16 10 C 0.52 5.70 6.74 -10.99 -0.07 5.62 16 11 N -0.86 -4.96 8.66 31.22 0.27 -4.69 16 12 O -0.49 -8.32 15.02 -18.96 -0.28 -8.61 16 13 C -0.08 -1.20 1.79 -90.57 -0.16 -1.37 16 14 C -0.13 -1.96 5.22 -26.61 -0.14 -2.10 16 15 C 0.15 2.81 6.52 -3.71 -0.02 2.79 16 16 N -0.61 -14.18 2.77 -172.32 -0.48 -14.65 16 17 C -0.26 -7.24 10.03 -15.06 -0.15 -7.39 16 18 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 19 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 20 N -0.91 -28.06 13.97 55.49 0.78 -27.29 16 21 Si 0.88 22.36 24.35 -169.99 -4.14 18.22 16 22 H -0.29 -7.04 6.62 56.52 0.37 -6.67 16 23 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 24 H -0.27 -6.69 6.63 56.52 0.37 -6.32 16 25 C 0.13 2.70 4.20 -3.71 -0.02 2.69 16 26 C -0.13 -2.18 5.04 -26.61 -0.13 -2.31 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 30 H 0.40 3.25 7.22 -40.82 -0.29 2.96 16 31 H 0.07 0.33 7.56 -51.93 -0.39 -0.07 16 32 H 0.07 0.21 7.56 -51.92 -0.39 -0.18 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.25 7.57 -51.93 -0.39 -0.15 16 36 H 0.08 0.39 7.57 -51.93 -0.39 0.00 16 37 H 0.40 0.95 7.67 -40.82 -0.31 0.64 16 38 H 0.40 2.03 8.93 -40.82 -0.36 1.67 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.65 7.40 -51.93 -0.38 0.27 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.02 0.48 7.08 -51.93 -0.37 0.12 16 46 H 0.07 1.72 4.50 -51.93 -0.23 1.48 16 47 H 0.06 0.87 6.36 -51.93 -0.33 0.54 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -37.61 365.68 -6.99 -44.59 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.99 Total: 1.17 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -0.17 Total: 3.21 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.35 Total: -54.76 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.55 Total: -17.95 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.61 -6.99 -44.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677334463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.578 kcal (2) G-P(sol) polarization free energy of solvation -37.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds