Wall clock time and date at job start Tue Mar 31 2020 11:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47122 * 2 1 4 4 N 1.46507 * 109.47151 * 120.00072 * 2 1 3 5 5 C 1.34776 * 119.99550 * 274.99577 * 4 2 1 6 6 O 1.21278 * 120.00196 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99853 * 179.72596 * 5 4 2 8 8 C 1.52996 * 109.46937 * 300.27724 * 7 5 4 9 9 C 1.53004 * 109.47123 * 60.27695 * 7 5 4 10 10 C 1.50696 * 109.47421 * 180.27577 * 7 5 4 11 11 N 1.34769 * 120.00190 * 179.97438 * 10 7 5 12 12 O 1.21283 * 119.99887 * 0.02562 * 10 7 5 13 13 C 1.53007 * 109.46836 * 239.99567 * 2 1 3 14 14 C 1.53044 * 109.45585 * 180.02562 * 13 2 1 15 15 C 1.53193 * 109.30772 * 178.60642 * 14 13 2 16 16 N 1.46919 * 108.76985 * 54.65283 * 15 14 13 17 17 C 1.36936 * 120.63155 * 126.40244 * 16 15 14 18 18 H 1.07997 * 120.00277 * 332.61489 * 17 16 15 19 19 C 1.38813 * 120.00007 * 152.60714 * 17 16 15 20 20 N 1.31623 * 119.99769 * 159.34543 * 19 17 16 21 21 Si 1.86796 * 120.00134 * 339.35099 * 19 17 16 22 22 H 1.48502 * 109.47213 * 92.93826 * 21 19 17 23 23 H 1.48501 * 109.47121 * 212.93939 * 21 19 17 24 24 H 1.48498 * 109.47122 * 332.94138 * 21 19 17 25 25 C 1.46925 * 118.74209 * 306.38512 * 16 15 14 26 26 C 1.53038 * 109.45672 * 59.97500 * 13 2 1 27 27 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46815 * 299.99981 * 1 2 3 29 29 H 1.08999 * 109.47403 * 60.00276 * 1 2 3 30 30 H 0.96996 * 120.00228 * 95.00342 * 4 2 1 31 31 H 1.09007 * 109.47620 * 60.00001 * 8 7 5 32 32 H 1.09009 * 109.47194 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47542 * 299.99643 * 8 7 5 34 34 H 1.08997 * 109.47282 * 59.99941 * 9 7 5 35 35 H 1.08996 * 109.46841 * 180.02562 * 9 7 5 36 36 H 1.08997 * 109.46926 * 300.00245 * 9 7 5 37 37 H 0.96997 * 120.00439 * 0.02562 * 11 10 7 38 38 H 0.97007 * 120.00055 * 180.02562 * 11 10 7 39 39 H 1.08991 * 109.46054 * 300.00036 * 13 2 1 40 40 H 1.09000 * 109.49513 * 298.56457 * 14 13 2 41 41 H 1.08992 * 109.49724 * 58.66823 * 14 13 2 42 42 H 1.09006 * 109.59266 * 294.86406 * 15 14 13 43 43 H 1.09000 * 109.70386 * 174.50845 * 15 14 13 44 44 H 0.97007 * 119.99508 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.58623 * 293.82571 * 25 16 15 46 46 H 1.08998 * 109.71138 * 173.46310 * 25 16 15 47 47 H 1.08999 * 109.50011 * 301.33167 * 26 13 2 48 48 H 1.09001 * 109.50163 * 61.40364 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1584 2.4116 7 6 2.6436 -0.7301 3.5891 8 6 1.6977 -1.8841 3.9273 9 6 4.0473 -1.2806 3.3292 10 6 2.6892 0.2369 4.7440 11 7 3.1044 -0.1803 5.9563 12 8 2.3513 1.3905 4.5827 13 6 2.0399 -0.7214 -1.2493 14 6 3.5703 -0.7218 -1.2486 15 6 4.0772 -1.4749 -2.4826 16 7 3.4746 -0.8772 -3.6818 17 6 4.2605 -0.4517 -4.7194 18 1 5.2757 -0.1342 -4.5330 19 6 3.7522 -0.4286 -6.0109 20 7 4.3152 0.3315 -6.9262 21 14 2.2692 -1.4761 -6.4499 22 1 1.0300 -0.6753 -6.2807 23 1 2.3801 -1.9243 -7.8613 24 1 2.2184 -2.6612 -5.5566 25 6 2.0128 -0.7449 -3.7470 26 6 1.5291 -0.0001 -2.4986 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.2491 -1.6318 1.1527 31 1 1.6647 -2.5836 3.0919 32 1 2.0570 -2.3993 4.8182 33 1 0.6977 -1.4920 4.1125 34 1 4.7211 -0.4584 3.0883 35 1 4.4061 -1.7958 4.2202 36 1 4.0143 -1.9800 2.4939 37 1 3.3743 -1.1030 6.0855 38 1 3.1334 0.4421 6.6998 39 1 1.6765 -1.7489 -1.2490 40 1 3.9344 0.3053 -1.2742 41 1 3.9336 -1.2148 -0.3471 42 1 3.7902 -2.5243 -2.4138 43 1 5.1627 -1.3961 -2.5411 44 1 3.9602 0.3474 -7.8288 45 1 1.5575 -1.7347 -3.7812 46 1 1.7338 -0.1833 -4.6385 47 1 0.4393 0.0205 -2.4868 48 1 1.9122 1.0202 -2.5120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677334463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:52 Heat of formation + Delta-G solvation = -93.030128 kcal Electronic energy + Delta-G solvation = -27431.120899 eV Core-core repulsion = 23712.918451 eV Total energy + Delta-G solvation = -3718.202448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84839 -40.26660 -39.19484 -36.81829 -36.20758 -34.47213 -34.02873 -32.79201 -31.94846 -30.46046 -28.32537 -27.15077 -25.47724 -24.61088 -24.23429 -22.96339 -21.69599 -21.13156 -20.33899 -18.92618 -18.65443 -17.73030 -17.39470 -16.85576 -16.70414 -16.30254 -15.90300 -15.52437 -15.35610 -15.19815 -15.10371 -14.96924 -14.68482 -14.41291 -14.28096 -13.70874 -13.64416 -13.52350 -13.30703 -13.25100 -13.22291 -13.05391 -12.71102 -12.56998 -12.40830 -12.24934 -12.18220 -11.99576 -11.62486 -11.50361 -11.27120 -11.15897 -11.01132 -10.66729 -10.60438 -10.32332 -9.99154 -8.89571 -8.15276 -5.46417 1.32190 1.42471 1.52601 1.60656 1.77155 2.01722 2.43890 2.64181 3.07266 3.39735 3.53803 3.70126 3.74798 3.90023 3.95879 3.98334 4.10256 4.37075 4.39998 4.47858 4.52581 4.59860 4.69144 4.70433 4.73386 4.78960 4.82350 4.83733 4.88118 5.01510 5.02568 5.11185 5.13495 5.19963 5.21992 5.24426 5.30315 5.38119 5.53538 5.66468 5.88859 5.93928 6.14070 6.48354 6.64973 6.95383 7.33451 7.46909 7.66140 8.05613 9.05079 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.003100 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.203672 B = 9029.498359 C = 9284.941691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.155 3.845 3 H 0.050 0.950 4 N -0.704 5.704 5 C 0.512 3.488 6 O -0.558 6.558 7 C -0.097 4.097 8 C -0.136 4.136 9 C -0.139 4.139 10 C 0.516 3.484 11 N -0.831 5.831 12 O -0.566 6.566 13 C -0.072 4.072 14 C -0.117 4.117 15 C 0.144 3.856 16 N -0.622 5.622 17 C -0.249 4.249 18 H 0.045 0.955 19 C -0.041 4.041 20 N -0.962 5.962 21 Si 0.953 3.047 22 H -0.275 1.275 23 H -0.314 1.314 24 H -0.253 1.253 25 C 0.121 3.879 26 C -0.122 4.122 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.414 0.586 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.418 0.582 38 H 0.408 0.592 39 H 0.099 0.901 40 H 0.032 0.968 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.261 0.739 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 -13.071 27.686 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.050 3.950 3 H 0.069 0.931 4 N -0.358 5.358 5 C 0.297 3.703 6 O -0.434 6.434 7 C -0.104 4.104 8 C -0.193 4.193 9 C -0.197 4.197 10 C 0.299 3.701 11 N -0.397 5.397 12 O -0.443 6.443 13 C -0.091 4.091 14 C -0.156 4.156 15 C 0.019 3.981 16 N -0.347 5.347 17 C -0.379 4.379 18 H 0.063 0.937 19 C -0.236 4.236 20 N -0.609 5.609 21 Si 0.782 3.218 22 H -0.202 1.202 23 H -0.243 1.243 24 H -0.176 1.176 25 C -0.004 4.004 26 C -0.162 4.162 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.252 0.748 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.251 0.749 38 H 0.239 0.761 39 H 0.117 0.883 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.392 -11.501 27.313 30.317 hybrid contribution -0.012 0.023 -0.699 0.700 sum -6.404 -11.478 26.614 29.682 Atomic orbital electron populations 1.22148 0.94451 1.03194 1.01700 1.20794 0.94431 0.95960 0.83792 0.93124 1.45837 1.67112 1.14463 1.08355 1.20602 0.77608 0.86827 0.85244 1.90837 1.49803 1.17878 1.84911 1.20929 1.01728 0.96733 0.91037 1.21942 0.97101 0.94743 1.05542 1.21963 0.90254 1.01546 1.05918 1.20430 0.76334 0.87970 0.85320 1.43603 1.68905 1.16910 1.10325 1.90891 1.48237 1.21166 1.84032 1.21218 0.95434 1.00405 0.92082 1.21923 0.95291 0.99965 0.98388 1.21125 0.96555 0.95217 0.85169 1.44502 1.01793 1.71287 1.17139 1.18866 0.96919 1.35547 0.86531 0.93699 1.25983 1.01834 1.00144 0.95599 1.70000 1.45744 1.40840 1.04300 0.85809 0.79631 0.80717 0.75681 1.20220 1.24317 1.17646 1.21405 0.83809 0.97907 0.97293 1.21998 1.00865 0.98797 0.94510 0.90129 0.94171 0.91135 0.74770 0.88421 0.87529 0.93156 0.93635 0.87413 0.88463 0.74938 0.76075 0.88312 0.94897 0.89101 0.93495 0.93320 0.93067 0.93933 0.93829 0.89476 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.13 71.98 0.66 -2.83 16 2 C 0.16 3.83 2.16 44.99 0.10 3.93 16 3 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 4 N -0.70 -13.54 4.15 -442.52 -1.84 -15.37 16 5 C 0.51 12.75 6.44 87.66 0.56 13.31 16 6 O -0.56 -21.25 13.84 20.42 0.28 -20.97 16 7 C -0.10 -1.46 0.72 -53.67 -0.04 -1.49 16 8 C -0.14 -0.92 8.26 71.98 0.59 -0.33 16 9 C -0.14 -1.19 8.27 71.98 0.60 -0.60 16 10 C 0.52 10.70 6.74 87.66 0.59 11.30 16 11 N -0.83 -7.57 8.66 -173.54 -1.50 -9.07 16 12 O -0.57 -19.87 15.02 20.40 0.31 -19.56 16 13 C -0.07 -1.84 1.79 -10.76 -0.02 -1.86 16 14 C -0.12 -3.34 5.22 30.67 0.16 -3.18 16 15 C 0.14 5.13 6.52 86.36 0.56 5.70 16 16 N -0.62 -28.69 2.77 -699.10 -1.94 -30.63 16 17 C -0.25 -14.30 10.03 84.03 0.84 -13.45 16 18 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 19 C -0.04 -2.46 5.23 84.86 0.44 -2.01 16 20 N -0.96 -61.78 13.97 21.65 0.30 -61.48 16 21 Si 0.95 46.42 24.35 68.60 1.67 48.09 16 22 H -0.28 -12.70 6.62 99.48 0.66 -12.04 16 23 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 24 H -0.25 -11.38 6.63 99.48 0.66 -10.72 16 25 C 0.12 4.90 4.20 86.36 0.36 5.26 16 26 C -0.12 -3.94 5.04 30.67 0.15 -3.79 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.56 6.40 -2.39 -0.02 1.55 16 30 H 0.41 4.74 7.22 -92.71 -0.67 4.07 16 31 H 0.10 0.27 7.56 -2.38 -0.02 0.25 16 32 H 0.11 0.00 7.56 -2.38 -0.02 -0.02 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.11 0.15 7.57 -2.39 -0.02 0.13 16 36 H 0.10 0.46 7.57 -2.39 -0.02 0.44 16 37 H 0.42 0.22 7.67 -92.71 -0.71 -0.49 16 38 H 0.41 3.38 8.93 -92.70 -0.83 2.55 16 39 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.90 7.40 -2.39 -0.02 1.88 16 42 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 44 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 45 H 0.04 1.59 7.08 -2.39 -0.02 1.57 16 46 H 0.04 2.02 4.50 -2.39 -0.01 2.01 16 47 H 0.09 2.33 6.36 -2.39 -0.02 2.31 16 48 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -90.99 365.68 1.54 -89.45 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -1.32 Total: 9.58 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.57 Total: 9.96 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -4.97 Total: -116.55 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: 0.59 Total: -40.53 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.67 Total: 48.09 kcal Total: -90.99 1.54 -89.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677334463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.583 kcal (2) G-P(sol) polarization free energy of solvation -90.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds