Wall clock time and date at job start Tue Mar 31 2020 11:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46685 * 2 1 4 4 N 1.46498 * 109.46915 * 240.00568 * 2 1 3 5 5 C 1.36940 * 120.00330 * 84.99823 * 4 2 1 6 6 H 1.08002 * 119.99752 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00187 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99867 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99940 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47276 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47472 * 119.99697 * 9 7 5 12 12 H 1.48506 * 109.47080 * 239.99641 * 9 7 5 13 13 C 1.52994 * 109.47242 * 120.00431 * 2 1 3 14 14 H 1.09003 * 109.58514 * 302.35017 * 13 2 1 15 15 C 1.53197 * 109.58766 * 62.63328 * 13 2 1 16 16 C 1.53042 * 109.30955 * 174.56567 * 15 13 2 17 17 C 1.53037 * 109.53595 * 298.62940 * 16 15 13 18 18 C 1.53193 * 109.31208 * 61.37578 * 17 16 15 19 19 N 1.46930 * 108.88768 * 305.28535 * 18 17 16 20 20 C 1.34774 * 120.63249 * 233.67329 * 19 18 17 21 21 O 1.21279 * 120.00195 * 185.80047 * 20 19 18 22 22 C 1.50704 * 119.99726 * 5.80146 * 20 19 18 23 23 C 1.53006 * 109.46789 * 179.97438 * 22 20 19 24 24 C 1.52997 * 109.46631 * 180.02562 * 23 22 20 25 25 C 1.50702 * 109.46901 * 180.02562 * 24 23 22 26 26 N 1.34775 * 120.00124 * 180.02562 * 25 24 23 27 27 O 1.21278 * 120.00165 * 359.97438 * 25 24 23 28 28 H 1.09000 * 109.47175 * 64.82063 * 1 2 3 29 29 H 1.09002 * 109.47070 * 184.82415 * 1 2 3 30 30 H 1.09006 * 109.46788 * 304.82095 * 1 2 3 31 31 H 0.96998 * 119.99910 * 265.00326 * 4 2 1 32 32 H 0.97003 * 119.99375 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.49450 * 54.60955 * 15 13 2 34 34 H 1.09001 * 109.49533 * 294.51461 * 15 13 2 35 35 H 1.09004 * 109.45321 * 178.61004 * 16 15 13 36 36 H 1.08997 * 109.46523 * 58.65707 * 16 15 13 37 37 H 1.09001 * 109.50367 * 301.41491 * 17 16 15 38 38 H 1.09008 * 109.49160 * 181.31889 * 17 16 15 39 39 H 1.08992 * 109.58946 * 65.14557 * 18 17 16 40 40 H 1.08995 * 109.58503 * 185.43595 * 18 17 16 41 41 H 1.08994 * 109.47088 * 299.99823 * 22 20 19 42 42 H 1.09000 * 109.46906 * 60.00253 * 22 20 19 43 43 H 1.08999 * 109.47094 * 300.00290 * 23 22 20 44 44 H 1.09000 * 109.46944 * 60.00577 * 23 22 20 45 45 H 1.08999 * 109.47616 * 299.99968 * 24 23 22 46 46 H 1.09001 * 109.47510 * 60.00576 * 24 23 22 47 47 H 0.96998 * 119.99973 * 359.97438 * 26 25 24 48 48 H 0.97002 * 120.00377 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0405 -2.4243 7 6 2.6112 -0.6617 -3.5094 8 7 2.9242 -1.9388 -3.4504 9 14 2.7902 0.2704 -5.1182 10 1 2.3763 1.6829 -4.9207 11 1 4.2071 0.2267 -5.5607 12 1 1.9290 -0.3573 -6.1525 13 6 2.0400 -0.7213 1.2491 14 1 1.6438 -0.2339 2.1399 15 6 1.5857 -2.1841 1.2190 16 6 2.2107 -2.9325 2.3986 17 6 3.7358 -2.8978 2.2766 18 6 4.2145 -1.4432 2.3188 19 7 3.5113 -0.6807 1.2782 20 6 4.2001 0.0377 0.3695 21 8 3.6092 0.7458 -0.4181 22 6 5.7048 -0.0391 0.3319 23 6 6.2338 0.8646 -0.7836 24 6 7.7613 0.7861 -0.8221 25 6 8.2824 1.6767 -1.9205 26 7 9.6087 1.7673 -2.1424 27 8 7.5084 2.3113 -2.6053 28 1 -0.3633 0.4372 -0.9300 29 1 -0.3633 -1.0240 0.0864 30 1 -0.3633 0.5869 0.8437 31 1 2.2489 -1.6317 -1.1528 32 1 3.2468 -2.3961 -4.2427 33 1 1.9059 -2.6452 0.2847 34 1 0.4992 -2.2291 1.2940 35 1 1.8693 -3.9677 2.3937 36 1 1.9100 -2.4557 3.3316 37 1 4.0357 -3.3524 1.3324 38 1 4.1796 -3.4510 3.1044 39 1 3.9956 -1.0147 3.2968 40 1 5.2883 -1.4065 2.1358 41 1 6.1093 0.2898 1.2891 42 1 6.0114 -1.0677 0.1419 43 1 5.8291 0.5353 -1.7407 44 1 5.9271 1.8933 -0.5940 45 1 8.1663 1.1152 0.1348 46 1 8.0676 -0.2426 -1.0120 47 1 10.2278 1.2595 -1.5949 48 1 9.9442 2.3408 -2.8491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689911199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:22 Heat of formation + Delta-G solvation = -44.857469 kcal Electronic energy + Delta-G solvation = -28208.804862 eV Core-core repulsion = 24492.691338 eV Total energy + Delta-G solvation = -3716.113524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.02999 -39.30794 -36.90791 -35.26169 -33.74247 -33.50050 -32.31924 -32.04208 -29.56202 -28.33968 -27.91254 -24.79929 -23.84207 -23.21218 -22.25649 -20.57300 -20.21990 -19.51609 -18.25630 -17.30379 -16.84900 -16.48824 -16.05092 -15.77894 -15.33340 -14.73102 -14.43700 -14.09926 -13.88947 -13.79529 -13.75324 -13.39993 -13.03668 -12.85653 -12.55767 -12.24277 -12.09277 -11.85663 -11.58681 -11.35560 -11.28672 -11.08205 -11.01349 -10.72231 -10.59675 -10.54776 -10.41048 -10.36643 -10.25369 -9.96364 -9.83342 -9.66067 -9.63807 -9.26118 -8.62357 -7.99633 -7.83041 -6.49978 -5.41692 -2.63025 2.77142 3.43703 3.59479 3.66686 3.72908 3.74500 3.76762 4.88775 4.90925 4.93782 5.00948 5.09914 5.16364 5.22993 5.35345 5.46402 5.56843 5.57403 5.61314 5.72329 5.77476 5.83193 5.86066 5.90602 5.95288 6.00635 6.10499 6.20282 6.24246 6.32860 6.36870 6.52810 6.54778 6.61274 6.68838 6.76399 6.93669 6.98343 7.11892 7.19903 7.33713 7.53272 8.11367 8.18484 8.35933 8.77601 9.20876 9.89712 10.45959 10.82347 11.82683 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.006255 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.296577 B = 4475.441014 C = 6503.318373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.166 3.834 3 H 0.085 0.915 4 N -0.705 5.705 5 C -0.172 4.172 6 H 0.065 0.935 7 C -0.029 4.029 8 N -0.948 5.948 9 Si 0.895 3.105 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.300 1.300 13 C 0.148 3.852 14 H 0.058 0.942 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.114 3.886 19 N -0.617 5.617 20 C 0.501 3.499 21 O -0.457 6.457 22 C -0.132 4.132 23 C -0.090 4.090 24 C -0.139 4.139 25 C 0.511 3.489 26 N -0.864 5.864 27 O -0.529 6.529 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.031 0.969 31 H 0.377 0.623 32 H 0.245 0.755 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.398 0.602 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.610 -0.416 16.141 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.057 3.943 3 H 0.103 0.897 4 N -0.347 5.347 5 C -0.304 4.304 6 H 0.083 0.917 7 C -0.222 4.222 8 N -0.601 5.601 9 Si 0.729 3.271 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.228 1.228 13 C 0.044 3.956 14 H 0.076 0.924 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.010 4.010 19 N -0.355 5.355 20 C 0.287 3.713 21 O -0.326 6.326 22 C -0.173 4.173 23 C -0.128 4.128 24 C -0.179 4.179 25 C 0.296 3.704 26 N -0.429 5.429 27 O -0.404 6.404 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.212 0.788 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.226 0.774 48 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.630 0.509 15.196 17.997 hybrid contribution 0.851 -0.231 -0.894 1.256 sum 10.481 0.278 14.301 17.733 Atomic orbital electron populations 1.22624 1.00398 1.00071 1.00098 1.20717 0.90102 0.98207 0.85320 0.89721 1.42388 1.77460 1.09633 1.05218 1.19129 1.31790 0.93141 0.86305 0.91716 1.24509 1.04169 0.95961 0.97535 1.69656 1.54025 1.08553 1.27885 0.86226 0.77007 0.78909 0.84951 1.20898 1.22464 1.22845 1.21545 0.79163 0.95604 0.99275 0.92399 1.21994 1.00194 0.95846 0.99096 1.21494 0.95141 1.00197 0.98546 1.21920 0.96595 0.96594 1.02321 1.21540 0.96848 0.91438 0.91192 1.47983 1.06095 1.50049 1.31346 1.20310 0.89099 0.81452 0.80392 1.90886 1.68386 1.37180 1.36138 1.21624 0.94218 1.01711 0.99705 1.21083 0.90758 1.00662 1.00331 1.21696 0.99016 0.99943 0.97272 1.20861 0.82110 0.82235 0.85161 1.43948 1.07848 1.51165 1.39915 1.90820 1.56078 1.45037 1.48477 0.92623 0.93880 0.95009 0.78810 0.94505 0.90338 0.91220 0.92301 0.92531 0.91194 0.91677 0.92486 0.90407 0.90569 0.89813 0.89306 0.90839 0.89312 0.88949 0.77411 0.77257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 9.32 37.16 0.35 -2.95 16 2 C 0.17 3.52 1.89 -67.93 -0.13 3.39 16 3 H 0.09 2.00 5.90 -52.05 -0.31 1.69 16 4 N -0.71 -18.06 3.48 -53.43 -0.19 -18.24 16 5 C -0.17 -5.05 8.11 -15.06 -0.12 -5.17 16 6 H 0.06 1.97 7.83 -52.49 -0.41 1.56 16 7 C -0.03 -0.89 5.50 -17.43 -0.10 -0.99 16 8 N -0.95 -29.94 13.06 55.49 0.72 -29.21 16 9 Si 0.90 25.03 29.55 -169.99 -5.02 20.01 16 10 H -0.28 -7.86 7.11 56.52 0.40 -7.45 16 11 H -0.30 -8.50 7.11 56.52 0.40 -8.09 16 12 H -0.30 -8.35 7.11 56.52 0.40 -7.95 16 13 C 0.15 2.51 2.74 -67.45 -0.18 2.32 16 14 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 15 C -0.13 -2.09 4.82 -26.61 -0.13 -2.22 16 16 C -0.12 -1.42 5.88 -26.69 -0.16 -1.58 16 17 C -0.14 -1.56 6.08 -26.61 -0.16 -1.73 16 18 C 0.11 1.34 6.34 -3.71 -0.02 1.31 16 19 N -0.62 -9.96 2.98 -165.01 -0.49 -10.45 16 20 C 0.50 9.43 7.13 -10.98 -0.08 9.35 16 21 O -0.46 -10.76 9.21 5.56 0.05 -10.71 16 22 C -0.13 -1.93 4.06 -27.88 -0.11 -2.05 16 23 C -0.09 -1.50 3.79 -26.73 -0.10 -1.60 16 24 C -0.14 -1.64 5.70 -27.88 -0.16 -1.80 16 25 C 0.51 7.23 8.10 -10.99 -0.09 7.14 16 26 N -0.86 -7.83 8.87 31.22 0.28 -7.55 16 27 O -0.53 -10.69 16.82 5.56 0.09 -10.60 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.79 6.40 -51.93 -0.33 0.46 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.38 10.23 5.84 -40.82 -0.24 9.99 16 32 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.08 1.51 6.22 -51.93 -0.32 1.19 16 34 H 0.07 1.05 6.69 -51.93 -0.35 0.70 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 41 H 0.08 0.84 7.70 -51.93 -0.40 0.44 16 42 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.09 1.95 8.06 -51.93 -0.42 1.54 16 44 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.40 2.10 8.83 -40.82 -0.36 1.74 16 48 H 0.40 3.35 8.93 -40.82 -0.36 2.98 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -37.88 368.80 -8.20 -46.07 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -8.00 Total: 11.68 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.20 Total: 3.44 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: 0.32 Total: -65.46 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.14 Total: -21.31 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.02 Total: 20.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.88 -8.20 -46.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689911199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.214 kcal (2) G-P(sol) polarization free energy of solvation -37.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds