Wall clock time and date at job start Tue Mar 31 2020 11:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46685 * 2 1 4 4 N 1.46498 * 109.46915 * 240.00568 * 2 1 3 5 5 C 1.36940 * 120.00330 * 84.99823 * 4 2 1 6 6 H 1.08002 * 119.99752 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00187 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99867 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99940 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47276 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47472 * 119.99697 * 9 7 5 12 12 H 1.48506 * 109.47080 * 239.99641 * 9 7 5 13 13 C 1.52994 * 109.47242 * 120.00431 * 2 1 3 14 14 H 1.09003 * 109.58514 * 302.35017 * 13 2 1 15 15 C 1.53197 * 109.58766 * 62.63328 * 13 2 1 16 16 C 1.53042 * 109.30955 * 174.56567 * 15 13 2 17 17 C 1.53037 * 109.53595 * 298.62940 * 16 15 13 18 18 C 1.53193 * 109.31208 * 61.37578 * 17 16 15 19 19 N 1.46930 * 108.88768 * 305.28535 * 18 17 16 20 20 C 1.34774 * 120.63249 * 233.67329 * 19 18 17 21 21 O 1.21279 * 120.00195 * 185.80047 * 20 19 18 22 22 C 1.50704 * 119.99726 * 5.80146 * 20 19 18 23 23 C 1.53006 * 109.46789 * 179.97438 * 22 20 19 24 24 C 1.52997 * 109.46631 * 180.02562 * 23 22 20 25 25 C 1.50702 * 109.46901 * 180.02562 * 24 23 22 26 26 N 1.34775 * 120.00124 * 180.02562 * 25 24 23 27 27 O 1.21278 * 120.00165 * 359.97438 * 25 24 23 28 28 H 1.09000 * 109.47175 * 64.82063 * 1 2 3 29 29 H 1.09002 * 109.47070 * 184.82415 * 1 2 3 30 30 H 1.09006 * 109.46788 * 304.82095 * 1 2 3 31 31 H 0.96998 * 119.99910 * 265.00326 * 4 2 1 32 32 H 0.97003 * 119.99375 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.49450 * 54.60955 * 15 13 2 34 34 H 1.09001 * 109.49533 * 294.51461 * 15 13 2 35 35 H 1.09004 * 109.45321 * 178.61004 * 16 15 13 36 36 H 1.08997 * 109.46523 * 58.65707 * 16 15 13 37 37 H 1.09001 * 109.50367 * 301.41491 * 17 16 15 38 38 H 1.09008 * 109.49160 * 181.31889 * 17 16 15 39 39 H 1.08992 * 109.58946 * 65.14557 * 18 17 16 40 40 H 1.08995 * 109.58503 * 185.43595 * 18 17 16 41 41 H 1.08994 * 109.47088 * 299.99823 * 22 20 19 42 42 H 1.09000 * 109.46906 * 60.00253 * 22 20 19 43 43 H 1.08999 * 109.47094 * 300.00290 * 23 22 20 44 44 H 1.09000 * 109.46944 * 60.00577 * 23 22 20 45 45 H 1.08999 * 109.47616 * 299.99968 * 24 23 22 46 46 H 1.09001 * 109.47510 * 60.00576 * 24 23 22 47 47 H 0.96998 * 119.99973 * 359.97438 * 26 25 24 48 48 H 0.97002 * 120.00377 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0405 -2.4243 7 6 2.6112 -0.6617 -3.5094 8 7 2.9242 -1.9388 -3.4504 9 14 2.7902 0.2704 -5.1182 10 1 2.3763 1.6829 -4.9207 11 1 4.2071 0.2267 -5.5607 12 1 1.9290 -0.3573 -6.1525 13 6 2.0400 -0.7213 1.2491 14 1 1.6438 -0.2339 2.1399 15 6 1.5857 -2.1841 1.2190 16 6 2.2107 -2.9325 2.3986 17 6 3.7358 -2.8978 2.2766 18 6 4.2145 -1.4432 2.3188 19 7 3.5113 -0.6807 1.2782 20 6 4.2001 0.0377 0.3695 21 8 3.6092 0.7458 -0.4181 22 6 5.7048 -0.0391 0.3319 23 6 6.2338 0.8646 -0.7836 24 6 7.7613 0.7861 -0.8221 25 6 8.2824 1.6767 -1.9205 26 7 9.6087 1.7673 -2.1424 27 8 7.5084 2.3113 -2.6053 28 1 -0.3633 0.4372 -0.9300 29 1 -0.3633 -1.0240 0.0864 30 1 -0.3633 0.5869 0.8437 31 1 2.2489 -1.6317 -1.1528 32 1 3.2468 -2.3961 -4.2427 33 1 1.9059 -2.6452 0.2847 34 1 0.4992 -2.2291 1.2940 35 1 1.8693 -3.9677 2.3937 36 1 1.9100 -2.4557 3.3316 37 1 4.0357 -3.3524 1.3324 38 1 4.1796 -3.4510 3.1044 39 1 3.9956 -1.0147 3.2968 40 1 5.2883 -1.4065 2.1358 41 1 6.1093 0.2898 1.2891 42 1 6.0114 -1.0677 0.1419 43 1 5.8291 0.5353 -1.7407 44 1 5.9271 1.8933 -0.5940 45 1 8.1663 1.1152 0.1348 46 1 8.0676 -0.2426 -1.0120 47 1 10.2278 1.2595 -1.5949 48 1 9.9442 2.3408 -2.8491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689911199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:20 Heat of formation + Delta-G solvation = -75.057284 kcal Electronic energy + Delta-G solvation = -28210.114424 eV Core-core repulsion = 24492.691338 eV Total energy + Delta-G solvation = -3717.423087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.38865 -40.46984 -38.25213 -36.89942 -35.07554 -34.58254 -34.02141 -33.51249 -31.23582 -29.68690 -29.40270 -26.14202 -25.65974 -24.64149 -23.59713 -21.75272 -21.38406 -20.93806 -19.59203 -19.02112 -18.26981 -17.57263 -17.38583 -16.95897 -16.73841 -16.29496 -15.98262 -15.67309 -15.47919 -15.02013 -14.97030 -14.79202 -14.41863 -14.21627 -14.10034 -13.75904 -13.53074 -13.20513 -13.03588 -12.87693 -12.74596 -12.62821 -12.59366 -12.37395 -12.23884 -12.12385 -11.86153 -11.66794 -11.64931 -11.50150 -11.32839 -11.18424 -11.04003 -10.82334 -10.64177 -9.52883 -9.23799 -8.61745 -7.79367 -4.95765 1.35452 1.41131 1.47351 1.68777 2.13795 2.38881 2.63417 2.71524 3.55579 3.72839 3.92041 4.01635 4.05947 4.08038 4.14489 4.15292 4.25889 4.35488 4.43367 4.50091 4.64242 4.65496 4.68134 4.74156 4.81830 4.85092 4.90129 4.96338 5.01134 5.07942 5.15639 5.22615 5.25419 5.31577 5.36973 5.49105 5.51621 5.61229 5.63617 5.69479 5.92515 6.06025 6.45818 6.52396 6.88768 7.42339 7.52051 7.83077 8.31187 8.55833 9.45481 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.006255 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.296577 B = 4475.441014 C = 6503.318373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.057 0.943 4 N -0.703 5.703 5 C -0.149 4.149 6 H 0.045 0.955 7 C -0.086 4.086 8 N -0.974 5.974 9 Si 0.941 3.059 10 H -0.284 1.284 11 H -0.309 1.309 12 H -0.293 1.293 13 C 0.151 3.849 14 H 0.087 0.913 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.133 4.133 18 C 0.106 3.894 19 N -0.616 5.616 20 C 0.484 3.516 21 O -0.523 6.523 22 C -0.121 4.121 23 C -0.083 4.083 24 C -0.127 4.127 25 C 0.502 3.498 26 N -0.836 5.836 27 O -0.606 6.606 28 H 0.025 0.975 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.369 0.631 32 H 0.239 0.761 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.018 0.982 44 H 0.045 0.955 45 H 0.140 0.860 46 H 0.119 0.881 47 H 0.421 0.579 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.396 -1.541 20.328 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 H 0.075 0.925 4 N -0.343 5.343 5 C -0.283 4.283 6 H 0.063 0.937 7 C -0.276 4.276 8 N -0.630 5.630 9 Si 0.775 3.225 10 H -0.210 1.210 11 H -0.238 1.238 12 H -0.221 1.221 13 C 0.047 3.953 14 H 0.104 0.896 15 C -0.165 4.165 16 C -0.148 4.148 17 C -0.171 4.171 18 C -0.016 4.016 19 N -0.352 5.352 20 C 0.272 3.728 21 O -0.397 6.397 22 C -0.160 4.160 23 C -0.121 4.121 24 C -0.167 4.167 25 C 0.289 3.711 26 N -0.401 5.401 27 O -0.487 6.487 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.203 0.797 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.147 0.853 42 H 0.116 0.884 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.158 0.842 46 H 0.137 0.863 47 H 0.253 0.747 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 11.465 -0.645 19.475 22.609 hybrid contribution 0.316 0.183 -2.064 2.096 sum 11.781 -0.462 17.412 21.028 Atomic orbital electron populations 1.22460 0.98780 1.00924 1.00051 1.20808 0.91056 0.97093 0.85821 0.92504 1.42401 1.77253 1.09064 1.05604 1.19141 1.29202 0.92167 0.87749 0.93673 1.24969 1.06002 0.96839 0.99773 1.69750 1.56037 1.09273 1.27896 0.85472 0.76117 0.78032 0.82850 1.20993 1.23804 1.22068 1.21435 0.80203 0.96067 0.97590 0.89570 1.21905 1.00728 0.94986 0.98897 1.21484 0.95481 1.00307 0.97544 1.21917 0.96160 0.96658 1.02366 1.21941 0.97782 0.90967 0.90873 1.48124 1.05864 1.49568 1.31677 1.21184 0.91048 0.80657 0.79862 1.90867 1.69937 1.40107 1.38815 1.21609 0.91216 1.02006 1.01207 1.20869 0.94438 0.99189 0.97639 1.21677 0.95081 1.01069 0.98835 1.21384 0.83049 0.81686 0.84999 1.43701 1.06526 1.50265 1.39578 1.90800 1.58260 1.48330 1.51297 0.95593 0.93092 0.91497 0.79735 0.95164 0.94675 0.90759 0.91468 0.89961 0.93992 0.87969 0.89451 0.88122 0.85340 0.88424 0.96301 0.93650 0.84225 0.86329 0.74679 0.76667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.25 9.32 71.98 0.67 -5.58 16 2 C 0.16 6.95 1.89 44.99 0.08 7.03 16 3 H 0.06 2.82 5.90 -4.24 -0.03 2.80 16 4 N -0.70 -37.71 3.48 -322.94 -1.13 -38.83 16 5 C -0.15 -9.27 8.11 84.03 0.68 -8.59 16 6 H 0.05 2.94 7.83 -2.91 -0.02 2.92 16 7 C -0.09 -5.53 5.50 84.86 0.47 -5.07 16 8 N -0.97 -64.19 13.06 21.65 0.28 -63.91 16 9 Si 0.94 54.27 29.55 68.60 2.03 56.30 16 10 H -0.28 -16.20 7.11 99.48 0.71 -15.49 16 11 H -0.31 -18.31 7.11 99.48 0.71 -17.60 16 12 H -0.29 -16.36 7.11 99.48 0.71 -15.66 16 13 C 0.15 4.90 2.74 44.92 0.12 5.02 16 14 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.13 -3.79 4.82 30.67 0.15 -3.64 16 16 C -0.11 -2.29 5.88 30.62 0.18 -2.11 16 17 C -0.13 -2.51 6.08 30.67 0.19 -2.33 16 18 C 0.11 2.00 6.34 86.36 0.55 2.55 16 19 N -0.62 -18.75 2.98 -794.36 -2.36 -21.12 16 20 C 0.48 18.27 7.13 87.66 0.62 18.90 16 21 O -0.52 -26.07 9.21 -3.03 -0.03 -26.10 16 22 C -0.12 -3.32 4.06 29.85 0.12 -3.20 16 23 C -0.08 -2.84 3.79 30.60 0.12 -2.72 16 24 C -0.13 -2.73 5.70 29.85 0.17 -2.56 16 25 C 0.50 14.07 8.10 87.66 0.71 14.78 16 26 N -0.84 -13.55 8.87 -173.54 -1.54 -15.09 16 27 O -0.61 -26.00 16.82 -3.02 -0.05 -26.05 16 28 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.86 6.40 -2.39 -0.02 1.85 16 30 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.37 20.96 5.84 -92.71 -0.54 20.42 16 32 H 0.24 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.03 1.36 6.22 -2.39 -0.01 1.35 16 34 H 0.07 2.11 6.69 -2.39 -0.02 2.10 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 1.46 5.93 -2.39 -0.01 1.45 16 41 H 0.13 2.20 7.70 -2.39 -0.02 2.18 16 42 H 0.10 2.45 7.93 -2.39 -0.02 2.43 16 43 H 0.02 0.88 8.06 -2.39 -0.02 0.86 16 44 H 0.04 1.76 8.06 -2.39 -0.02 1.74 16 45 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.42 2.96 8.83 -92.71 -0.82 2.14 16 48 H 0.40 6.26 8.93 -92.71 -0.83 5.43 16 Total: -1.00 -94.31 368.80 0.82 -93.50 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -1.22 Total: 28.81 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 4.83 Total: 12.49 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -4.75 Total: -138.95 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.08 Total: -52.15 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 2.03 Total: 56.30 kcal Total: -94.31 0.82 -93.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689911199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.440 kcal (2) G-P(sol) polarization free energy of solvation -94.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds