Wall clock time and date at job start Tue Mar 31 2020 10:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46601 * 2 1 4 4 C 1.52996 * 109.47694 * 120.00450 * 2 1 3 5 5 C 1.50699 * 109.46910 * 295.00389 * 4 2 1 6 6 N 1.34779 * 119.99918 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00306 * 359.97438 * 5 4 2 8 8 C 1.50700 * 109.46994 * 240.00998 * 2 1 3 9 9 O 1.21282 * 119.99892 * 262.76134 * 8 2 1 10 10 N 1.34776 * 120.00246 * 82.75918 * 8 2 1 11 11 C 1.46924 * 120.63263 * 353.99423 * 10 8 2 12 12 C 1.53195 * 108.77476 * 126.41154 * 11 10 8 13 13 C 1.53041 * 109.31292 * 54.63229 * 12 11 10 14 14 H 1.09002 * 109.45593 * 58.65861 * 13 12 11 15 15 C 1.53000 * 109.45941 * 178.62704 * 13 12 11 16 16 C 1.53039 * 109.54151 * 298.63544 * 13 12 11 17 17 C 1.46931 * 120.62920 * 174.01106 * 10 8 2 18 18 H 1.09006 * 109.58403 * 113.66043 * 17 10 8 19 19 C 1.53002 * 109.58847 * 353.38296 * 17 10 8 20 20 N 1.46498 * 109.47310 * 72.86093 * 19 17 10 21 21 C 1.36941 * 119.99852 * 174.51758 * 20 19 17 22 22 H 1.07996 * 119.99857 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99869 * 179.97438 * 21 20 19 24 24 N 1.31613 * 119.99781 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99823 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47096 * 60.00291 * 25 23 21 27 27 H 1.48498 * 109.47104 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47402 * 300.00454 * 25 23 21 29 29 H 1.09000 * 109.46948 * 302.50796 * 1 2 3 30 30 H 1.08995 * 109.47451 * 62.51127 * 1 2 3 31 31 H 1.09007 * 109.46734 * 182.51468 * 1 2 3 32 32 H 1.09004 * 109.47041 * 54.99815 * 4 2 1 33 33 H 1.08999 * 109.47247 * 174.99952 * 4 2 1 34 34 H 0.97003 * 120.00019 * 359.97438 * 6 5 4 35 35 H 0.96999 * 119.99669 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.58318 * 6.62538 * 11 10 8 37 37 H 1.08994 * 109.58694 * 246.19697 * 11 10 8 38 38 H 1.09009 * 109.49768 * 294.68518 * 12 11 10 39 39 H 1.08995 * 109.52382 * 174.60448 * 12 11 10 40 40 H 1.08994 * 109.47026 * 60.02846 * 15 13 12 41 41 H 1.08994 * 109.46989 * 180.02562 * 15 13 12 42 42 H 1.09007 * 109.47208 * 300.03416 * 15 13 12 43 43 H 1.08997 * 109.49533 * 181.30988 * 16 13 12 44 44 H 1.08996 * 109.49776 * 301.41442 * 16 13 12 45 45 H 1.09000 * 109.47460 * 192.86781 * 19 17 10 46 46 H 1.09009 * 109.46497 * 312.86001 * 19 17 10 47 47 H 0.96997 * 120.00433 * 354.51383 * 20 19 17 48 48 H 0.97003 * 119.99978 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 7 1.9855 -0.3916 3.7000 7 8 1.0117 1.0872 2.3633 8 6 2.0323 -0.7102 -1.2306 9 8 2.3592 -1.8764 -1.1667 10 7 2.1182 -0.0495 -2.4021 11 6 1.6046 1.3213 -2.5279 12 6 2.7176 2.2158 -3.0831 13 6 3.2420 1.6185 -4.3909 14 1 2.4234 1.5349 -5.1058 15 6 4.3302 2.5274 -4.9661 16 6 3.8273 0.2305 -4.1213 17 6 2.7270 -0.6865 -3.5779 18 1 1.9670 -0.8422 -4.3436 19 6 3.3332 -2.0325 -3.1758 20 7 2.2592 -2.9990 -2.9337 21 6 2.5627 -4.3079 -2.6694 22 1 3.5938 -4.6276 -2.6390 23 6 1.5451 -5.2236 -2.4395 24 7 0.2885 -4.8338 -2.4760 25 14 1.9591 -7.0089 -2.0782 26 1 2.7940 -7.0852 -0.8524 27 1 0.7045 -7.7760 -1.8716 28 1 2.7081 -7.5850 -3.2238 29 1 -0.3633 0.5523 0.8667 30 1 -0.3634 0.4743 -0.9116 31 1 -0.3633 -1.0268 0.0451 32 1 1.6055 -1.7199 1.2950 33 1 3.1264 -0.7995 1.2054 34 1 2.4895 -1.2155 3.7905 35 1 1.7292 0.1095 4.4900 36 1 1.2961 1.6872 -1.5487 37 1 0.7537 1.3316 -3.2090 38 1 3.5304 2.2768 -2.3593 39 1 2.3226 3.2141 -3.2716 40 1 5.1487 2.6112 -4.2513 41 1 4.7035 2.1024 -5.8977 42 1 3.9135 3.5160 -5.1588 43 1 4.2215 -0.1845 -5.0488 44 1 4.6296 0.3101 -3.3878 45 1 3.9752 -2.3961 -3.9781 46 1 3.9223 -1.9087 -2.2670 47 1 1.3331 -2.7118 -2.9606 48 1 -0.4226 -5.4736 -2.3149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691834470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:17 Heat of formation + Delta-G solvation = -66.679676 kcal Electronic energy + Delta-G solvation = -28111.583245 eV Core-core repulsion = 24394.523439 eV Total energy + Delta-G solvation = -3717.059806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69666 -40.46819 -38.53800 -36.63849 -35.11369 -34.64727 -34.53782 -33.37290 -31.48962 -29.32187 -28.72898 -27.10687 -25.30227 -24.41150 -24.07187 -22.59922 -21.30808 -20.82325 -19.74722 -19.07456 -18.34506 -17.91501 -17.12152 -16.81317 -16.64528 -16.39683 -15.88454 -15.54432 -15.43941 -15.13053 -14.96345 -14.66729 -14.58799 -14.31813 -13.99199 -13.89441 -13.73350 -13.32916 -13.09620 -12.88332 -12.75438 -12.71484 -12.61568 -12.50964 -12.20884 -12.13654 -12.08561 -11.94244 -11.80639 -11.63721 -11.27106 -11.14569 -10.94891 -10.79006 -10.60280 -9.79651 -9.33276 -8.57101 -7.78665 -4.96556 1.45413 1.49327 1.55039 1.62812 2.02027 2.12978 2.65028 2.71019 3.53567 3.60462 3.73788 3.82288 3.86797 4.01575 4.04104 4.13270 4.21262 4.33669 4.36239 4.47622 4.55029 4.59266 4.68936 4.70686 4.72192 4.82920 4.88195 4.93583 4.96947 5.01358 5.08046 5.09555 5.15528 5.17056 5.27278 5.30149 5.35720 5.45393 5.55588 5.59994 5.90674 5.93692 6.41467 6.42671 6.72751 7.34483 7.47997 7.64875 8.30072 8.53228 9.46055 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.006281 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.030919 B = 4457.142748 C = 7101.509311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 H 0.108 0.892 4 C -0.121 4.121 5 C 0.526 3.474 6 N -0.838 5.838 7 O -0.575 6.575 8 C 0.475 3.525 9 O -0.501 6.501 10 N -0.611 5.611 11 C 0.101 3.899 12 C -0.121 4.121 13 C -0.088 4.088 14 H 0.071 0.929 15 C -0.139 4.139 16 C -0.110 4.110 17 C 0.147 3.853 18 H 0.054 0.946 19 C 0.167 3.833 20 N -0.699 5.699 21 C -0.207 4.207 22 H 0.061 0.939 23 C -0.085 4.085 24 N -0.974 5.974 25 Si 0.965 3.035 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.281 1.281 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.415 0.585 35 H 0.409 0.591 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.013 0.987 46 H 0.019 0.981 47 H 0.367 0.633 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 18.808 4.418 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 H 0.126 0.874 4 C -0.162 4.162 5 C 0.311 3.689 6 N -0.402 5.402 7 O -0.455 6.455 8 C 0.261 3.739 9 O -0.373 6.373 10 N -0.347 5.347 11 C -0.021 4.021 12 C -0.159 4.159 13 C -0.107 4.107 14 H 0.089 0.911 15 C -0.197 4.197 16 C -0.149 4.149 17 C 0.043 3.957 18 H 0.072 0.928 19 C 0.041 3.959 20 N -0.340 5.340 21 C -0.340 4.340 22 H 0.079 0.921 23 C -0.275 4.275 24 N -0.628 5.628 25 Si 0.796 3.204 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.207 1.207 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.246 0.754 35 H 0.241 0.759 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.031 0.969 46 H 0.036 0.964 47 H 0.199 0.801 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.411 18.628 4.234 20.151 hybrid contribution -0.299 -1.629 0.624 1.770 sum 6.112 16.999 4.858 18.707 Atomic orbital electron populations 1.21760 0.92884 1.01242 1.03455 1.20923 0.97763 1.00347 0.91156 0.87422 1.21395 1.03553 0.99846 0.91395 1.20532 0.77832 0.84608 0.85931 1.43702 1.59218 1.29875 1.07406 1.90667 1.41486 1.26044 1.87324 1.21088 0.80134 0.87220 0.85411 1.91218 1.46469 1.15414 1.84222 1.48025 1.61117 1.15943 1.09660 1.21971 0.96919 0.80336 1.02876 1.21963 0.98051 0.99136 0.96790 1.21098 0.98699 0.93649 0.97258 0.91062 1.21760 0.97934 0.99316 1.00652 1.21892 0.96642 0.95256 1.01112 1.21309 0.95117 0.92186 0.87095 0.92813 1.20828 0.91298 0.88032 0.95777 1.42264 1.03841 1.04691 1.83167 1.19442 0.91898 0.86571 1.36099 0.92075 1.25321 0.95253 1.01568 1.05407 1.69825 0.98590 1.34214 1.60138 0.85311 0.75969 0.81154 0.77998 1.21197 1.22429 1.20719 0.89920 0.91683 0.94932 0.89365 0.87922 0.75392 0.75881 0.88635 0.91375 0.91651 0.88461 0.92693 0.92546 0.91361 0.90446 0.91820 0.96905 0.96362 0.80149 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.63 71.98 0.62 -3.54 16 2 C -0.08 -2.38 1.51 -11.54 -0.02 -2.40 16 3 H 0.11 2.79 6.49 -2.38 -0.02 2.77 16 4 C -0.12 -3.38 4.59 29.85 0.14 -3.25 16 5 C 0.53 12.95 7.83 87.66 0.69 13.63 16 6 N -0.84 -13.57 8.87 -173.53 -1.54 -15.11 16 7 O -0.58 -17.32 14.80 -3.05 -0.05 -17.36 16 8 C 0.48 17.49 6.43 87.66 0.56 18.05 16 9 O -0.50 -23.84 9.86 -3.03 -0.03 -23.87 16 10 N -0.61 -19.19 2.97 -795.02 -2.36 -21.56 16 11 C 0.10 2.25 5.68 86.36 0.49 2.74 16 12 C -0.12 -2.08 5.36 30.67 0.16 -1.92 16 13 C -0.09 -1.64 2.68 -10.77 -0.03 -1.67 16 14 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 15 C -0.14 -2.02 9.19 71.98 0.66 -1.35 16 16 C -0.11 -2.72 4.62 30.67 0.14 -2.58 16 17 C 0.15 4.96 2.91 44.97 0.13 5.09 16 18 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 19 C 0.17 7.37 4.89 86.38 0.42 7.80 16 20 N -0.70 -38.48 3.18 -343.44 -1.09 -39.57 16 21 C -0.21 -12.52 9.73 84.03 0.82 -11.70 16 22 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 23 C -0.08 -5.22 5.50 84.86 0.47 -4.76 16 24 N -0.97 -63.65 13.06 21.65 0.28 -63.37 16 25 Si 0.96 49.52 29.55 68.60 2.03 51.55 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16 28 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 29 H 0.08 2.46 6.00 -2.39 -0.01 2.44 16 30 H 0.06 1.82 7.04 -2.39 -0.02 1.81 16 31 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.09 2.85 8.04 -2.38 -0.02 2.83 16 33 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.42 4.91 8.83 -92.71 -0.82 4.09 16 35 H 0.41 5.27 8.93 -92.71 -0.83 4.45 16 36 H 0.10 1.95 5.00 -2.39 -0.01 1.94 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.01 0.58 8.09 -2.39 -0.02 0.56 16 46 H 0.02 0.88 6.42 -2.38 -0.02 0.86 16 47 H 0.37 21.87 7.17 -92.71 -0.66 21.20 16 48 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -79.69 369.02 1.17 -78.52 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -1.33 Total: 36.62 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 5.26 Total: 14.15 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -4.71 Total: -139.61 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.07 Total: -41.24 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.03 Total: 51.55 kcal Total: -79.69 1.17 -78.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691834470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.839 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds