Wall clock time and date at job start Tue Mar 31 2020 11:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.47103 * 2 1 4 4 C 1.52996 * 109.47186 * 119.99687 * 2 1 3 5 5 C 1.53001 * 109.47105 * 184.99811 * 4 2 1 6 6 N 1.46499 * 109.47059 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99787 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00107 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99892 * 179.97438 * 7 6 5 10 10 C 1.52996 * 112.85151 * 311.19821 * 9 7 6 11 11 C 1.53782 * 113.61600 * 179.97438 * 9 7 6 12 12 C 1.53781 * 87.08260 * 219.93680 * 11 9 7 13 13 C 1.53786 * 87.17350 * 25.39213 * 12 11 9 14 14 N 1.46903 * 109.46962 * 239.99983 * 2 1 3 15 15 C 1.46902 * 110.99681 * 85.00089 * 14 2 1 16 16 C 1.50704 * 109.46933 * 179.97438 * 15 14 2 17 17 O 1.21295 * 119.99850 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00236 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00084 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00391 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00114 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00253 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99828 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47597 * 89.99694 * 23 21 19 25 25 H 1.48500 * 109.47126 * 209.99541 * 23 21 19 26 26 H 1.48501 * 109.47285 * 329.99355 * 23 21 19 27 27 H 1.08995 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46988 * 299.99613 * 1 2 3 29 29 H 1.08998 * 109.46951 * 59.99971 * 1 2 3 30 30 H 1.09009 * 109.47008 * 65.00363 * 4 2 1 31 31 H 1.08995 * 109.47585 * 305.00486 * 4 2 1 32 32 H 1.09000 * 109.46504 * 60.00321 * 5 4 2 33 33 H 1.08995 * 109.47450 * 300.00757 * 5 4 2 34 34 H 0.96997 * 120.00239 * 0.02562 * 6 5 4 35 35 H 1.08998 * 109.47320 * 288.80582 * 10 9 7 36 36 H 1.08999 * 109.47324 * 48.80173 * 10 9 7 37 37 H 1.09006 * 109.47299 * 168.80195 * 10 9 7 38 38 H 1.09001 * 113.61250 * 105.38498 * 11 9 7 39 39 H 1.08997 * 113.61225 * 334.48339 * 11 9 7 40 40 H 1.09002 * 113.61445 * 139.98212 * 12 11 9 41 41 H 1.09002 * 113.61408 * 270.79943 * 12 11 9 42 42 H 1.08993 * 113.61491 * 89.15923 * 13 12 11 43 43 H 1.09000 * 113.61138 * 220.06261 * 13 12 11 44 44 H 1.00897 * 110.99233 * 208.94765 * 14 2 1 45 45 H 1.08995 * 109.46973 * 299.99546 * 15 14 2 46 46 H 1.09000 * 109.47160 * 59.99869 * 15 14 2 47 47 H 0.97002 * 119.99863 * 359.97438 * 18 16 15 48 48 H 0.96999 * 120.00546 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0533 -1.3043 2.5095 7 6 5.3742 -1.3397 2.7751 8 8 6.1584 -0.7991 2.0243 9 6 5.8765 -2.0501 4.0056 10 6 5.1149 -1.6550 5.2723 11 6 7.4053 -2.0003 4.1647 12 6 7.3250 -3.4616 4.6368 13 6 6.0228 -3.5722 3.8262 14 7 2.0197 -0.6925 -1.1995 15 6 2.0825 0.2226 -2.3469 16 6 2.5885 -0.5215 -3.5558 17 8 2.8688 -1.6985 -3.4700 18 7 2.7286 0.1206 -4.7324 19 6 3.1895 -0.5562 -5.8320 20 1 3.4398 -1.6040 -5.7555 21 6 3.3334 0.1056 -7.0452 22 7 3.7747 -0.5432 -8.0993 23 14 2.8998 1.9177 -7.1778 24 1 4.0994 2.7375 -6.8717 25 1 2.4352 2.2159 -8.5564 26 1 1.8198 2.2403 -6.2110 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7517 -1.7715 1.2056 31 1 1.6054 -0.2617 2.1370 32 1 3.8532 0.4371 1.3573 33 1 3.9995 -1.0726 0.4259 34 1 3.4261 -1.7363 3.1102 35 1 5.3793 -0.6352 5.5520 36 1 4.0428 -1.7138 5.0849 37 1 5.3800 -2.3343 6.0825 38 1 7.7415 -1.3094 4.9378 39 1 7.9384 -1.8747 3.2223 40 1 8.1311 -4.0886 4.2557 41 1 7.1801 -3.5657 5.7122 42 1 6.1773 -3.8771 2.7913 43 1 5.2446 -4.1485 4.3266 44 1 2.9174 -1.1204 -1.0287 45 1 1.0871 0.6163 -2.5525 46 1 2.7589 1.0462 -2.1182 47 1 2.5034 1.0616 -4.8013 48 1 3.8748 -0.0814 -8.9464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733905804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:38 Heat of formation + Delta-G solvation = -61.343182 kcal Electronic energy + Delta-G solvation = -25677.914862 eV Core-core repulsion = 21961.086464 eV Total energy + Delta-G solvation = -3716.828399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83860 -38.74864 -38.12143 -37.11560 -34.87247 -33.91994 -31.81565 -31.48666 -30.26662 -28.77352 -26.59789 -26.01317 -25.30599 -23.89889 -23.06712 -21.23958 -20.44718 -19.37590 -18.87768 -18.30610 -17.45227 -16.57838 -16.12747 -15.85771 -15.43967 -15.40218 -15.07459 -14.70596 -14.60079 -14.02046 -13.94153 -13.56354 -13.37209 -13.10432 -13.01643 -12.77131 -12.64567 -12.58950 -12.26628 -12.15917 -11.96983 -11.75837 -11.67694 -11.48570 -11.36636 -11.30082 -11.15549 -10.86380 -10.83937 -10.64451 -10.56888 -9.94591 -9.74540 -9.54215 -9.26083 -8.54522 -8.17595 -8.12014 -6.28060 -3.79293 2.45590 2.94757 3.05074 3.09336 3.17199 3.77695 4.05886 4.09003 4.13715 4.14242 4.34744 4.44305 4.54124 4.64094 4.81077 4.83802 4.95674 5.05435 5.12626 5.23103 5.24409 5.30958 5.36503 5.39955 5.45997 5.49104 5.52082 5.61395 5.63358 5.67517 5.70710 5.78528 5.82507 5.85251 5.89489 5.96381 5.99986 6.07669 6.23856 6.27619 7.13663 7.29222 7.59167 7.61764 8.06037 8.17833 8.63067 8.98205 9.45692 9.86213 10.85165 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.002482 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.806284 B =11277.021014 C =12252.313125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.111 3.889 6 N -0.727 5.727 7 C 0.525 3.475 8 O -0.535 6.535 9 C -0.113 4.113 10 C -0.126 4.126 11 C -0.115 4.115 12 C -0.141 4.141 13 C -0.121 4.121 14 N -0.666 5.666 15 C 0.047 3.953 16 C 0.450 3.550 17 O -0.564 6.564 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.399 0.601 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.351 0.649 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 1.176 29.281 29.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.063 0.937 4 C -0.170 4.170 5 C -0.013 4.013 6 N -0.379 5.379 7 C 0.311 3.689 8 O -0.411 6.411 9 C -0.116 4.116 10 C -0.183 4.183 11 C -0.152 4.152 12 C -0.178 4.178 13 C -0.159 4.159 14 N -0.301 5.301 15 C -0.086 4.086 16 C 0.236 3.764 17 O -0.446 6.446 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.234 0.766 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.172 0.828 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.351 0.523 28.370 28.407 hybrid contribution 0.047 1.875 0.044 1.876 sum -1.303 2.398 28.414 28.545 Atomic orbital electron populations 1.21786 0.94219 1.02587 1.01109 1.21462 0.96264 0.95779 0.88953 0.93748 1.21976 0.93753 1.02847 0.98430 1.21478 0.94218 0.97479 0.88078 1.45985 1.07648 1.57170 1.27048 1.20433 0.82016 0.79666 0.86788 1.90724 1.55386 1.45258 1.49721 1.22213 0.98195 0.97220 0.93956 1.21591 0.99412 1.02212 0.95127 1.22882 0.92955 0.96723 1.02678 1.22829 0.97873 0.97178 0.99963 1.22963 0.98584 0.92742 1.01613 1.60201 1.35083 1.32016 1.02779 1.21763 1.01302 0.94075 0.91445 1.19718 0.84452 0.88217 0.84020 1.90564 1.53776 1.15873 1.84398 1.42205 1.60119 1.11131 1.09615 1.19433 1.39966 0.98046 0.85838 0.86292 1.25037 0.97523 0.98410 0.95234 1.69618 1.45243 1.36532 1.00815 0.86668 0.79009 0.85181 0.78524 1.19652 1.20179 1.19480 0.91765 0.92857 0.92461 0.89996 0.90651 0.91568 0.90975 0.76634 0.91719 0.92029 0.91188 0.91027 0.88614 0.90907 0.89933 0.89473 0.90566 0.82768 0.89449 0.93725 0.79707 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.42 37.16 0.35 -1.07 16 2 C 0.09 0.96 2.65 -67.71 -0.18 0.78 16 3 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 4 C -0.13 -1.17 4.92 -26.73 -0.13 -1.30 16 5 C 0.11 1.20 5.50 -4.04 -0.02 1.18 16 6 N -0.73 -6.79 5.44 -60.30 -0.33 -7.12 16 7 C 0.53 6.08 6.94 -10.98 -0.08 6.00 16 8 O -0.53 -8.70 15.90 5.56 0.09 -8.61 16 9 C -0.11 -0.92 1.26 -154.75 -0.19 -1.11 16 10 C -0.13 -0.69 8.99 37.16 0.33 -0.35 16 11 C -0.11 -0.97 7.00 -25.92 -0.18 -1.15 16 12 C -0.14 -0.92 7.72 -25.92 -0.20 -1.12 16 13 C -0.12 -0.88 7.21 -25.82 -0.19 -1.06 16 14 N -0.67 -10.32 5.93 -107.99 -0.64 -10.96 16 15 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 16 C 0.45 10.52 7.82 -10.99 -0.09 10.43 16 17 O -0.56 -15.56 15.78 5.54 0.09 -15.47 16 18 N -0.59 -14.47 5.09 -10.96 -0.06 -14.53 16 19 C -0.30 -8.80 10.16 -14.94 -0.15 -8.96 16 20 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -26.23 13.96 55.50 0.77 -25.45 16 23 Si 0.88 19.77 27.74 -169.99 -4.71 15.05 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 30 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 34 H 0.40 2.54 7.36 -40.82 -0.30 2.24 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.26 7.00 -51.93 -0.36 -0.10 16 37 H 0.07 0.29 7.34 -51.93 -0.38 -0.09 16 38 H 0.07 0.54 8.10 -51.93 -0.42 0.11 16 39 H 0.10 1.02 7.44 -51.93 -0.39 0.64 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.41 7.66 -51.93 -0.40 0.02 16 42 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 43 H 0.08 0.43 8.10 -51.93 -0.42 0.00 16 44 H 0.35 5.81 6.17 -39.29 -0.24 5.57 16 45 H 0.09 1.33 7.44 -51.93 -0.39 0.95 16 46 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 47 H 0.37 7.96 5.76 -40.82 -0.24 7.72 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -35.56 384.50 -7.86 -43.42 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -8.01 Total: 13.79 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.85 Total: 4.09 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.25 Total: -58.06 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.18 Total: -24.08 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.56 -7.86 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733905804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.922 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds