Wall clock time and date at job start Tue Mar 31 2020 11:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.47103 * 2 1 4 4 C 1.52996 * 109.47186 * 119.99687 * 2 1 3 5 5 C 1.53001 * 109.47105 * 184.99811 * 4 2 1 6 6 N 1.46499 * 109.47059 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99787 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00107 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99892 * 179.97438 * 7 6 5 10 10 C 1.52996 * 112.85151 * 311.19821 * 9 7 6 11 11 C 1.53782 * 113.61600 * 179.97438 * 9 7 6 12 12 C 1.53781 * 87.08260 * 219.93680 * 11 9 7 13 13 C 1.53786 * 87.17350 * 25.39213 * 12 11 9 14 14 N 1.46903 * 109.46962 * 239.99983 * 2 1 3 15 15 C 1.46902 * 110.99681 * 85.00089 * 14 2 1 16 16 C 1.50704 * 109.46933 * 179.97438 * 15 14 2 17 17 O 1.21295 * 119.99850 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00236 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00084 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00391 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00114 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00253 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99828 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47597 * 89.99694 * 23 21 19 25 25 H 1.48500 * 109.47126 * 209.99541 * 23 21 19 26 26 H 1.48501 * 109.47285 * 329.99355 * 23 21 19 27 27 H 1.08995 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46988 * 299.99613 * 1 2 3 29 29 H 1.08998 * 109.46951 * 59.99971 * 1 2 3 30 30 H 1.09009 * 109.47008 * 65.00363 * 4 2 1 31 31 H 1.08995 * 109.47585 * 305.00486 * 4 2 1 32 32 H 1.09000 * 109.46504 * 60.00321 * 5 4 2 33 33 H 1.08995 * 109.47450 * 300.00757 * 5 4 2 34 34 H 0.96997 * 120.00239 * 0.02562 * 6 5 4 35 35 H 1.08998 * 109.47320 * 288.80582 * 10 9 7 36 36 H 1.08999 * 109.47324 * 48.80173 * 10 9 7 37 37 H 1.09006 * 109.47299 * 168.80195 * 10 9 7 38 38 H 1.09001 * 113.61250 * 105.38498 * 11 9 7 39 39 H 1.08997 * 113.61225 * 334.48339 * 11 9 7 40 40 H 1.09002 * 113.61445 * 139.98212 * 12 11 9 41 41 H 1.09002 * 113.61408 * 270.79943 * 12 11 9 42 42 H 1.08993 * 113.61491 * 89.15923 * 13 12 11 43 43 H 1.09000 * 113.61138 * 220.06261 * 13 12 11 44 44 H 1.00897 * 110.99233 * 208.94765 * 14 2 1 45 45 H 1.08995 * 109.46973 * 299.99546 * 15 14 2 46 46 H 1.09000 * 109.47160 * 59.99869 * 15 14 2 47 47 H 0.97002 * 119.99863 * 359.97438 * 18 16 15 48 48 H 0.96999 * 120.00546 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0533 -1.3043 2.5095 7 6 5.3742 -1.3397 2.7751 8 8 6.1584 -0.7991 2.0243 9 6 5.8765 -2.0501 4.0056 10 6 5.1149 -1.6550 5.2723 11 6 7.4053 -2.0003 4.1647 12 6 7.3250 -3.4616 4.6368 13 6 6.0228 -3.5722 3.8262 14 7 2.0197 -0.6925 -1.1995 15 6 2.0825 0.2226 -2.3469 16 6 2.5885 -0.5215 -3.5558 17 8 2.8688 -1.6985 -3.4700 18 7 2.7286 0.1206 -4.7324 19 6 3.1895 -0.5562 -5.8320 20 1 3.4398 -1.6040 -5.7555 21 6 3.3334 0.1056 -7.0452 22 7 3.7747 -0.5432 -8.0993 23 14 2.8998 1.9177 -7.1778 24 1 4.0994 2.7375 -6.8717 25 1 2.4352 2.2159 -8.5564 26 1 1.8198 2.2403 -6.2110 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7517 -1.7715 1.2056 31 1 1.6054 -0.2617 2.1370 32 1 3.8532 0.4371 1.3573 33 1 3.9995 -1.0726 0.4259 34 1 3.4261 -1.7363 3.1102 35 1 5.3793 -0.6352 5.5520 36 1 4.0428 -1.7138 5.0849 37 1 5.3800 -2.3343 6.0825 38 1 7.7415 -1.3094 4.9378 39 1 7.9384 -1.8747 3.2223 40 1 8.1311 -4.0886 4.2557 41 1 7.1801 -3.5657 5.7122 42 1 6.1773 -3.8771 2.7913 43 1 5.2446 -4.1485 4.3266 44 1 2.9174 -1.1204 -1.0287 45 1 1.0871 0.6163 -2.5525 46 1 2.7589 1.0462 -2.1182 47 1 2.5034 1.0616 -4.8013 48 1 3.8748 -0.0814 -8.9464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733905804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:37 Heat of formation + Delta-G solvation = -89.834927 kcal Electronic energy + Delta-G solvation = -25679.150357 eV Core-core repulsion = 21961.086464 eV Total energy + Delta-G solvation = -3718.063893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61830 -40.40853 -39.07153 -38.21953 -36.12661 -35.75568 -33.79801 -32.75649 -30.94417 -29.48444 -28.22877 -26.64812 -26.08076 -25.49550 -23.95599 -22.08070 -21.37830 -21.27741 -20.32766 -19.57968 -18.18161 -17.86474 -17.38010 -16.96608 -16.83143 -16.58543 -16.17146 -15.87206 -15.65578 -15.35753 -15.06075 -14.74214 -14.48561 -14.39101 -14.25550 -13.95933 -13.72467 -13.42043 -13.30772 -13.18449 -13.12290 -12.92430 -12.59498 -12.44409 -12.30660 -12.24319 -12.19036 -12.11994 -11.98661 -11.74370 -11.54365 -11.44853 -11.23361 -10.61703 -10.46631 -10.27987 -10.17113 -9.34718 -8.43836 -6.05035 1.27929 1.33575 1.42566 1.56215 1.92176 2.14965 2.20900 2.70756 3.12279 3.37732 3.42609 3.53519 3.73644 3.78826 3.86196 3.93353 4.01115 4.11338 4.14135 4.38400 4.45078 4.50935 4.55135 4.57807 4.65078 4.70133 4.74303 4.85615 4.90231 4.95938 5.00633 5.02522 5.03718 5.06622 5.18121 5.19273 5.26949 5.38923 5.47780 5.51152 5.51947 5.88890 6.07288 6.35988 6.51966 6.56990 6.84923 7.22395 7.36354 7.93037 8.73961 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.002482 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.806284 B =11277.021014 C =12252.313125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.056 0.944 4 C -0.117 4.117 5 C 0.114 3.886 6 N -0.711 5.711 7 C 0.516 3.484 8 O -0.593 6.593 9 C -0.108 4.108 10 C -0.122 4.122 11 C -0.127 4.127 12 C -0.128 4.128 13 C -0.121 4.121 14 N -0.684 5.684 15 C 0.061 3.939 16 C 0.446 3.554 17 O -0.615 6.615 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.230 1.230 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.417 0.583 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.340 0.660 45 H 0.116 0.884 46 H 0.072 0.928 47 H 0.390 0.610 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 3.681 32.632 33.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.074 0.926 4 C -0.155 4.155 5 C -0.010 4.010 6 N -0.363 5.363 7 C 0.303 3.697 8 O -0.473 6.473 9 C -0.112 4.112 10 C -0.179 4.179 11 C -0.165 4.165 12 C -0.166 4.166 13 C -0.159 4.159 14 N -0.319 5.319 15 C -0.072 4.072 16 C 0.234 3.766 17 O -0.500 6.500 18 N -0.232 5.232 19 C -0.460 4.460 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.574 5.574 23 Si 0.785 3.215 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.153 1.153 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.255 0.745 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.160 0.840 45 H 0.133 0.867 46 H 0.090 0.910 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.767 3.021 31.776 32.141 hybrid contribution 0.824 0.959 -0.989 1.605 sum -2.943 3.980 30.787 31.183 Atomic orbital electron populations 1.21780 0.92974 1.02329 1.02276 1.21645 0.97040 0.96166 0.87782 0.92570 1.21893 0.91870 1.02951 0.98799 1.21359 0.95621 0.96752 0.87308 1.45873 1.07440 1.56366 1.26666 1.21200 0.82153 0.78971 0.87332 1.90695 1.56872 1.47900 1.51832 1.22334 0.97936 0.97255 0.93626 1.21634 0.99914 1.02536 0.93848 1.22894 0.93314 0.98786 1.01491 1.22834 0.97251 0.95197 1.01284 1.22961 0.99936 0.92262 1.00719 1.60261 1.34632 1.32778 1.04206 1.21691 1.02864 0.93818 0.88787 1.21037 0.82296 0.87954 0.85266 1.90539 1.55380 1.18638 1.85427 1.42035 1.60477 1.11872 1.08866 1.19008 1.42386 0.96116 0.88458 0.92810 1.26144 0.96361 1.05146 0.93789 1.69801 1.46208 1.39635 1.01802 0.85352 0.80199 0.76316 0.79585 1.18276 1.19734 1.15349 0.92747 0.89862 0.93138 0.90110 0.87152 0.92246 0.94458 0.74530 0.91987 0.90390 0.89059 0.90049 0.92019 0.91134 0.87245 0.91950 0.88003 0.83994 0.86658 0.91012 0.77454 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.42 71.98 0.68 -1.62 16 2 C 0.08 1.63 2.65 44.92 0.12 1.75 16 3 H 0.06 1.01 7.80 -2.38 -0.02 0.99 16 4 C -0.12 -1.79 4.92 30.59 0.15 -1.64 16 5 C 0.11 2.40 5.50 86.38 0.48 2.88 16 6 N -0.71 -12.66 5.44 -463.07 -2.52 -15.18 16 7 C 0.52 12.15 6.94 87.66 0.61 12.76 16 8 O -0.59 -20.58 15.90 -3.03 -0.05 -20.63 16 9 C -0.11 -1.66 1.26 -52.34 -0.07 -1.73 16 10 C -0.12 -0.96 8.99 71.98 0.65 -0.32 16 11 C -0.13 -2.17 7.00 31.12 0.22 -1.95 16 12 C -0.13 -1.48 7.72 31.12 0.24 -1.24 16 13 C -0.12 -1.62 7.21 31.18 0.22 -1.39 16 14 N -0.68 -20.61 5.93 -495.56 -2.94 -23.55 16 15 C 0.06 1.96 5.97 85.56 0.51 2.47 16 16 C 0.45 21.18 7.82 87.66 0.69 21.86 16 17 O -0.62 -35.73 15.78 -3.07 -0.05 -35.78 16 18 N -0.59 -29.08 5.09 -306.99 -1.56 -30.64 16 19 C -0.33 -20.05 10.16 84.04 0.85 -19.19 16 20 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 21 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 22 N -0.93 -57.66 13.96 21.66 0.30 -57.36 16 23 Si 0.97 39.88 27.74 68.60 1.90 41.79 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.93 7.45 -2.39 -0.02 0.91 16 30 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.06 6.43 -2.39 -0.02 1.05 16 34 H 0.42 4.29 7.36 -92.71 -0.68 3.61 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.36 7.00 -2.39 -0.02 0.35 16 37 H 0.09 0.38 7.34 -2.38 -0.02 0.36 16 38 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 39 H 0.06 1.47 7.44 -2.39 -0.02 1.45 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 0.72 7.66 -2.39 -0.02 0.70 16 42 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 43 H 0.10 0.84 8.10 -2.39 -0.02 0.82 16 44 H 0.34 11.53 6.17 -89.70 -0.55 10.98 16 45 H 0.12 3.12 7.44 -2.39 -0.02 3.11 16 46 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 47 H 0.39 15.87 5.76 -92.71 -0.53 15.34 16 48 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -86.80 384.50 0.05 -86.75 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: -0.85 Total: 42.40 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.81 Total: 12.20 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -6.72 Total: -126.73 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -0.10 Total: -56.41 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.90 Total: 41.79 kcal Total: -86.80 0.05 -86.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733905804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.080 kcal (2) G-P(sol) polarization free energy of solvation -86.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds