Wall clock time and date at job start Tue Mar 31 2020 10:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46924 * 2 1 4 4 O 1.21278 * 120.00070 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99840 * 179.97438 * 3 2 1 6 6 C 1.46920 * 120.62899 * 6.01139 * 5 3 2 7 7 C 1.53191 * 108.77791 * 233.58631 * 6 5 3 8 8 C 1.53043 * 109.30943 * 305.36737 * 7 6 5 9 9 C 1.53041 * 109.53723 * 61.36242 * 8 7 6 10 10 C 1.46922 * 120.62873 * 185.99006 * 5 3 2 11 11 H 1.09002 * 109.58614 * 246.34259 * 10 5 3 12 12 C 1.53000 * 109.58906 * 6.62296 * 10 5 3 13 13 H 1.09000 * 109.47602 * 304.49334 * 12 10 5 14 14 C 1.53004 * 109.47157 * 184.48911 * 12 10 5 15 15 N 1.46902 * 109.46733 * 64.49361 * 12 10 5 16 16 C 1.46906 * 110.99902 * 205.00032 * 15 12 10 17 17 C 1.50693 * 109.47048 * 179.97438 * 16 15 12 18 18 O 1.21295 * 120.00281 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99865 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99887 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99971 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99767 * 179.72671 * 20 19 17 23 23 N 1.31409 * 120.00021 * 0.27161 * 22 20 19 24 24 Si 1.86797 * 119.99745 * 180.27167 * 22 20 19 25 25 H 1.48503 * 109.47332 * 60.00269 * 24 22 20 26 26 H 1.48510 * 109.47055 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47341 * 299.99762 * 24 22 20 28 28 H 1.09002 * 109.47021 * 59.99913 * 1 2 3 29 29 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47410 * 300.00287 * 1 2 3 31 31 H 1.08998 * 109.47126 * 240.00421 * 2 1 3 32 32 H 1.08999 * 109.47033 * 119.99548 * 2 1 3 33 33 H 1.08998 * 109.58860 * 353.37634 * 6 5 3 34 34 H 1.09006 * 109.58657 * 113.79554 * 6 5 3 35 35 H 1.08992 * 109.50003 * 65.31682 * 7 6 5 36 36 H 1.08992 * 109.49928 * 185.38624 * 7 6 5 37 37 H 1.08998 * 109.46296 * 181.38478 * 8 7 6 38 38 H 1.09008 * 109.46214 * 301.35807 * 8 7 6 39 39 H 1.09005 * 109.49050 * 178.68059 * 9 8 7 40 40 H 1.08998 * 109.49898 * 58.58945 * 9 8 7 41 41 H 1.08997 * 109.46902 * 174.96295 * 14 12 10 42 42 H 1.08996 * 109.46773 * 294.96129 * 14 12 10 43 43 H 1.08993 * 109.47110 * 54.96147 * 14 12 10 44 44 H 1.00899 * 110.99845 * 328.94906 * 15 12 10 45 45 H 1.08999 * 109.46743 * 59.99848 * 16 15 12 46 46 H 1.09004 * 109.46879 * 299.99778 * 16 15 12 47 47 H 0.97001 * 120.00063 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00224 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3231 0.5678 -0.1313 7 6 5.3178 0.6431 1.0314 8 6 5.9515 2.0357 1.0659 9 6 4.8632 3.0877 1.2921 10 6 3.8635 3.0401 0.1325 11 1 4.3586 3.3374 -0.7920 12 6 2.6994 3.9906 0.4194 13 1 1.9451 3.8873 -0.3607 14 6 3.2122 5.4319 0.4453 15 7 2.1058 3.6586 1.7215 16 6 0.7030 4.0899 1.7858 17 6 0.1290 3.7328 3.1326 18 8 0.8205 3.1744 3.9580 19 7 -1.1526 4.0349 3.4205 20 6 -1.6746 3.7104 4.6461 21 1 -1.0591 3.2125 5.3805 22 6 -2.9942 4.0269 4.9449 23 7 -3.7433 4.6324 4.0510 24 14 -3.7033 3.5917 6.6174 25 1 -2.9213 4.2743 7.6794 26 1 -5.1195 4.0335 6.6848 27 1 -3.6327 2.1221 6.8178 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7971 -0.3864 -0.1009 34 1 4.8579 0.6625 -1.0764 35 1 4.7952 0.4579 1.9698 36 1 6.0957 -0.1078 0.8938 37 1 6.6777 2.0842 1.8772 38 1 6.4527 2.2302 0.1176 39 1 5.3182 4.0771 1.3400 40 1 4.3449 2.8795 2.2281 41 1 2.3707 6.1149 0.5604 42 1 3.8995 5.5579 1.2818 43 1 3.7318 5.6495 -0.4878 44 1 2.1901 2.6722 1.9163 45 1 0.1326 3.5888 1.0037 46 1 0.6476 5.1689 1.6414 47 1 -1.7053 4.4824 2.7609 48 1 -4.6646 4.8530 4.2594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752132117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:10 Heat of formation + Delta-G solvation = -49.716322 kcal Electronic energy + Delta-G solvation = -28095.199659 eV Core-core repulsion = 24378.875439 eV Total energy + Delta-G solvation = -3716.324220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00130 -37.96631 -37.58650 -35.88024 -33.75204 -33.09953 -32.41931 -31.53399 -30.97002 -29.08565 -26.25704 -25.90722 -24.27089 -24.01320 -23.01243 -21.04536 -20.17415 -19.14707 -18.76034 -17.69778 -17.09172 -16.11818 -16.02835 -15.59563 -14.98974 -14.91159 -14.59450 -14.43301 -14.26234 -13.86449 -13.65327 -13.60496 -13.32425 -12.84768 -12.69303 -12.58797 -12.26099 -12.09430 -11.83761 -11.78887 -11.57110 -11.50510 -11.36005 -11.18740 -11.14211 -11.06065 -10.93908 -10.79768 -10.72504 -10.38985 -10.35138 -10.08153 -9.35645 -8.94667 -8.66903 -8.14321 -7.80883 -7.53612 -6.27546 -3.67661 2.60394 2.88163 3.28239 3.32344 3.37253 4.14843 4.26261 4.37030 4.54932 4.66606 4.69654 4.78732 4.98413 5.01093 5.06221 5.10640 5.15174 5.31653 5.34146 5.41741 5.44584 5.52267 5.60021 5.72133 5.74990 5.77899 5.85505 5.88518 5.92894 6.00262 6.02619 6.04230 6.25981 6.34258 6.37116 6.40317 6.45070 6.48469 6.60613 6.81591 7.34330 7.65379 7.67882 8.05967 8.22824 8.28049 8.79325 9.33211 9.73293 10.26468 10.90666 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.003815 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.457887 B = 7338.451937 C = 7785.090844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.507 3.493 4 O -0.521 6.521 5 N -0.614 5.614 6 C 0.109 3.891 7 C -0.138 4.138 8 C -0.120 4.120 9 C -0.130 4.130 10 C 0.148 3.852 11 H 0.071 0.929 12 C 0.072 3.928 13 H 0.090 0.910 14 C -0.144 4.144 15 N -0.648 5.648 16 C 0.053 3.947 17 C 0.448 3.552 18 O -0.590 6.590 19 N -0.569 5.569 20 C -0.295 4.295 21 H 0.100 0.900 22 C 0.020 3.980 23 N -0.905 5.905 24 Si 0.928 3.072 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.339 0.661 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.821 -7.863 -13.534 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.297 3.703 4 O -0.398 6.398 5 N -0.349 5.349 6 C -0.014 4.014 7 C -0.176 4.176 8 C -0.158 4.158 9 C -0.168 4.168 10 C 0.045 3.955 11 H 0.089 0.911 12 C -0.038 4.038 13 H 0.108 0.892 14 C -0.203 4.203 15 N -0.282 5.282 16 C -0.079 4.079 17 C 0.234 3.766 18 O -0.475 6.475 19 N -0.206 5.206 20 C -0.425 4.425 21 H 0.118 0.882 22 C -0.181 4.181 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.159 0.841 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.886 -7.133 -12.656 22.276 hybrid contribution -1.017 -0.613 -0.081 1.190 sum 15.870 -7.746 -12.738 21.774 Atomic orbital electron populations 1.21544 0.92663 1.01570 1.03805 1.21684 0.98946 0.94018 1.03626 1.20913 0.81726 0.92086 0.75553 1.90684 1.55579 1.44658 1.48858 1.48201 1.05563 1.07783 1.73309 1.21726 0.91052 0.90034 0.98555 1.21935 0.98550 0.97883 0.99209 1.21539 0.97964 0.94581 1.01672 1.21963 0.95891 0.99181 0.99764 1.21507 0.95332 0.80598 0.98046 0.91084 1.22076 0.94748 0.92906 0.94105 0.89249 1.21915 1.01252 0.96492 1.00594 1.60411 1.16170 1.23631 1.28010 1.21698 0.89791 1.00254 0.96147 1.20064 0.82839 0.84434 0.89279 1.90475 1.59872 1.46902 1.50220 1.41862 1.09851 1.53168 1.15713 1.19626 0.95173 1.35669 0.92061 0.88247 1.25219 0.96247 0.97289 0.99312 1.69615 1.08665 1.41661 1.34706 0.85960 0.77589 0.78862 0.82005 1.20030 1.21066 1.20068 0.92117 0.92301 0.91311 0.89524 0.89029 0.89707 0.91485 0.91033 0.90955 0.91697 0.92275 0.90669 0.89623 0.92618 0.92218 0.93424 0.84133 0.91362 0.90923 0.77538 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.20 37.16 0.34 -1.37 16 2 C -0.14 -1.51 4.78 -27.88 -0.13 -1.64 16 3 C 0.51 6.74 6.30 -10.98 -0.07 6.67 16 4 O -0.52 -8.65 7.97 5.56 0.04 -8.60 16 5 N -0.61 -6.81 2.80 -165.23 -0.46 -7.27 16 6 C 0.11 0.84 6.35 -3.71 -0.02 0.82 16 7 C -0.14 -1.07 6.08 -26.61 -0.16 -1.23 16 8 C -0.12 -1.02 5.88 -26.69 -0.16 -1.17 16 9 C -0.13 -1.45 4.85 -26.61 -0.13 -1.58 16 10 C 0.15 1.74 2.62 -67.60 -0.18 1.56 16 11 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 12 C 0.07 1.06 1.67 -67.71 -0.11 0.94 16 13 H 0.09 1.48 5.51 -53.09 -0.29 1.18 16 14 C -0.14 -1.91 9.02 37.16 0.34 -1.57 16 15 N -0.65 -11.98 4.66 -107.99 -0.50 -12.48 16 16 C 0.05 1.12 5.50 -4.98 -0.03 1.09 16 17 C 0.45 11.62 7.82 -10.99 -0.09 11.53 16 18 O -0.59 -17.13 15.78 5.54 0.09 -17.05 16 19 N -0.57 -15.59 5.29 -10.96 -0.06 -15.65 16 20 C -0.30 -8.70 9.68 -14.93 -0.14 -8.85 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -25.85 13.05 55.50 0.72 -25.13 16 24 Si 0.93 21.97 29.55 -169.99 -5.02 16.95 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 28 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.09 0.67 7.70 -51.93 -0.40 0.27 16 32 H 0.09 0.90 7.93 -51.93 -0.41 0.48 16 33 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 39 H 0.07 0.81 6.99 -51.93 -0.36 0.45 16 40 H 0.09 1.24 7.02 -51.93 -0.36 0.87 16 41 H 0.05 0.79 7.58 -51.93 -0.39 0.40 16 42 H 0.06 0.80 6.96 -51.93 -0.36 0.44 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.34 6.66 5.49 -39.29 -0.22 6.44 16 45 H 0.07 1.44 5.86 -51.93 -0.30 1.13 16 46 H 0.07 1.45 7.53 -51.93 -0.39 1.06 16 47 H 0.39 10.42 7.90 -40.82 -0.32 10.10 16 48 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -33.45 364.88 -8.20 -41.64 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -7.86 Total: 16.41 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -0.64 Total: 5.68 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.30 Total: -60.53 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: 0.13 Total: -25.65 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.45 -8.20 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752132117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.074 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds