Wall clock time and date at job start Tue Mar 31 2020 10:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46924 * 2 1 4 4 O 1.21278 * 120.00070 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99840 * 179.97438 * 3 2 1 6 6 C 1.46920 * 120.62899 * 6.01139 * 5 3 2 7 7 C 1.53191 * 108.77791 * 233.58631 * 6 5 3 8 8 C 1.53043 * 109.30943 * 305.36737 * 7 6 5 9 9 C 1.53041 * 109.53723 * 61.36242 * 8 7 6 10 10 C 1.46922 * 120.62873 * 185.99006 * 5 3 2 11 11 H 1.09002 * 109.58614 * 246.34259 * 10 5 3 12 12 C 1.53000 * 109.58906 * 6.62296 * 10 5 3 13 13 H 1.09000 * 109.47602 * 304.49334 * 12 10 5 14 14 C 1.53004 * 109.47157 * 184.48911 * 12 10 5 15 15 N 1.46902 * 109.46733 * 64.49361 * 12 10 5 16 16 C 1.46906 * 110.99902 * 205.00032 * 15 12 10 17 17 C 1.50693 * 109.47048 * 179.97438 * 16 15 12 18 18 O 1.21295 * 120.00281 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99865 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99887 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99971 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99767 * 179.72671 * 20 19 17 23 23 N 1.31409 * 120.00021 * 0.27161 * 22 20 19 24 24 Si 1.86797 * 119.99745 * 180.27167 * 22 20 19 25 25 H 1.48503 * 109.47332 * 60.00269 * 24 22 20 26 26 H 1.48510 * 109.47055 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47341 * 299.99762 * 24 22 20 28 28 H 1.09002 * 109.47021 * 59.99913 * 1 2 3 29 29 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47410 * 300.00287 * 1 2 3 31 31 H 1.08998 * 109.47126 * 240.00421 * 2 1 3 32 32 H 1.08999 * 109.47033 * 119.99548 * 2 1 3 33 33 H 1.08998 * 109.58860 * 353.37634 * 6 5 3 34 34 H 1.09006 * 109.58657 * 113.79554 * 6 5 3 35 35 H 1.08992 * 109.50003 * 65.31682 * 7 6 5 36 36 H 1.08992 * 109.49928 * 185.38624 * 7 6 5 37 37 H 1.08998 * 109.46296 * 181.38478 * 8 7 6 38 38 H 1.09008 * 109.46214 * 301.35807 * 8 7 6 39 39 H 1.09005 * 109.49050 * 178.68059 * 9 8 7 40 40 H 1.08998 * 109.49898 * 58.58945 * 9 8 7 41 41 H 1.08997 * 109.46902 * 174.96295 * 14 12 10 42 42 H 1.08996 * 109.46773 * 294.96129 * 14 12 10 43 43 H 1.08993 * 109.47110 * 54.96147 * 14 12 10 44 44 H 1.00899 * 110.99845 * 328.94906 * 15 12 10 45 45 H 1.08999 * 109.46743 * 59.99848 * 16 15 12 46 46 H 1.09004 * 109.46879 * 299.99778 * 16 15 12 47 47 H 0.97001 * 120.00063 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00224 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3231 0.5678 -0.1313 7 6 5.3178 0.6431 1.0314 8 6 5.9515 2.0357 1.0659 9 6 4.8632 3.0877 1.2921 10 6 3.8635 3.0401 0.1325 11 1 4.3586 3.3374 -0.7920 12 6 2.6994 3.9906 0.4194 13 1 1.9451 3.8873 -0.3607 14 6 3.2122 5.4319 0.4453 15 7 2.1058 3.6586 1.7215 16 6 0.7030 4.0899 1.7858 17 6 0.1290 3.7328 3.1326 18 8 0.8205 3.1744 3.9580 19 7 -1.1526 4.0349 3.4205 20 6 -1.6746 3.7104 4.6461 21 1 -1.0591 3.2125 5.3805 22 6 -2.9942 4.0269 4.9449 23 7 -3.7433 4.6324 4.0510 24 14 -3.7033 3.5917 6.6174 25 1 -2.9213 4.2743 7.6794 26 1 -5.1195 4.0335 6.6848 27 1 -3.6327 2.1221 6.8178 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7971 -0.3864 -0.1009 34 1 4.8579 0.6625 -1.0764 35 1 4.7952 0.4579 1.9698 36 1 6.0957 -0.1078 0.8938 37 1 6.6777 2.0842 1.8772 38 1 6.4527 2.2302 0.1176 39 1 5.3182 4.0771 1.3400 40 1 4.3449 2.8795 2.2281 41 1 2.3707 6.1149 0.5604 42 1 3.8995 5.5579 1.2818 43 1 3.7318 5.6495 -0.4878 44 1 2.1901 2.6722 1.9163 45 1 0.1326 3.5888 1.0037 46 1 0.6476 5.1689 1.6414 47 1 -1.7053 4.4824 2.7609 48 1 -4.6646 4.8530 4.2594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752132117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:09 Heat of formation + Delta-G solvation = -73.361761 kcal Electronic energy + Delta-G solvation = -28096.225003 eV Core-core repulsion = 24378.875439 eV Total energy + Delta-G solvation = -3717.349563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.99521 -40.01665 -38.50841 -37.13178 -35.91198 -34.03822 -33.41400 -33.23503 -32.61945 -30.10232 -28.05319 -26.88019 -25.88962 -25.00197 -24.11968 -21.91830 -21.30525 -20.94446 -19.94343 -19.77027 -18.23955 -17.47846 -17.18362 -16.95896 -16.59202 -16.20696 -16.06648 -15.59081 -15.49000 -15.18391 -15.04581 -14.80621 -14.39659 -14.13459 -14.04847 -13.68041 -13.50325 -13.43766 -13.14978 -13.10863 -12.94195 -12.82274 -12.69014 -12.60564 -12.44512 -12.15964 -12.11182 -12.06050 -11.96049 -11.77163 -11.53290 -11.50755 -11.29542 -10.33841 -10.02558 -9.96641 -9.56509 -8.99299 -8.46221 -5.95921 1.38468 1.38952 1.51199 1.63095 2.03540 2.07444 2.28970 3.05506 3.20649 3.51207 3.65551 3.85996 3.93469 4.03850 4.13492 4.18459 4.21423 4.26670 4.33130 4.43272 4.52121 4.57857 4.62200 4.68744 4.73951 4.77001 4.83935 4.90813 4.91793 4.99058 5.01288 5.03458 5.13218 5.17931 5.30257 5.30936 5.31892 5.38271 5.41341 5.57386 5.77493 5.94138 6.24623 6.46277 6.56623 6.60470 7.11458 7.29793 7.55570 8.11384 8.71584 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.003815 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.457887 B = 7338.451937 C = 7785.090844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C 0.494 3.506 4 O -0.565 6.565 5 N -0.611 5.611 6 C 0.104 3.896 7 C -0.135 4.135 8 C -0.116 4.116 9 C -0.125 4.125 10 C 0.150 3.850 11 H 0.097 0.903 12 C 0.071 3.929 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.650 5.650 16 C 0.073 3.927 17 C 0.443 3.557 18 O -0.625 6.625 19 N -0.575 5.575 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.997 3.003 25 H -0.271 1.271 26 H -0.268 1.268 27 H -0.270 1.270 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.022 0.978 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.039 0.961 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.329 0.671 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.393 0.607 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.348 -9.017 -14.751 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.284 3.716 4 O -0.445 6.445 5 N -0.344 5.344 6 C -0.018 4.018 7 C -0.173 4.173 8 C -0.153 4.153 9 C -0.163 4.163 10 C 0.047 3.953 11 H 0.114 0.886 12 C -0.039 4.039 13 H 0.093 0.907 14 C -0.198 4.198 15 N -0.283 5.283 16 C -0.060 4.060 17 C 0.231 3.769 18 O -0.512 6.512 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.820 3.180 25 H -0.197 1.197 26 H -0.192 1.192 27 H -0.195 1.195 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.148 0.852 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.226 0.774 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.447 -8.288 -13.906 24.543 hybrid contribution -1.463 -0.246 0.259 1.506 sum 16.984 -8.534 -13.647 23.399 Atomic orbital electron populations 1.21486 0.94437 1.02170 1.01127 1.21699 0.97278 0.92782 1.05824 1.21459 0.82231 0.92793 0.75074 1.90648 1.56812 1.46023 1.51033 1.48313 1.05520 1.08476 1.72098 1.22047 0.90583 0.89537 0.99592 1.21933 0.99066 0.98200 0.98144 1.21526 0.96974 0.93932 1.02876 1.21881 0.96331 1.00529 0.97588 1.21482 0.94044 0.80550 0.99196 0.88567 1.22117 0.95441 0.94684 0.91637 0.90734 1.21885 1.00749 0.95107 1.02040 1.60487 1.14237 1.22911 1.30698 1.21471 0.91309 1.00525 0.92656 1.20940 0.82187 0.83159 0.90656 1.90432 1.60584 1.48317 1.51871 1.41939 1.10456 1.53412 1.15397 1.19644 0.96140 1.37823 0.92821 0.90420 1.26108 0.95787 0.96297 1.03221 1.69693 1.09138 1.41242 1.36342 0.84946 0.77357 0.78751 0.76976 1.19654 1.19246 1.19527 0.92855 0.89972 0.95858 0.85633 0.88122 0.87943 0.88910 0.93459 0.88164 0.91499 0.90079 0.90362 0.93570 0.94149 0.92600 0.90388 0.85158 0.91470 0.90109 0.77376 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.20 71.98 0.66 -2.72 16 2 C -0.14 -2.70 4.78 29.85 0.14 -2.56 16 3 C 0.49 12.96 6.30 87.66 0.55 13.51 16 4 O -0.56 -19.41 7.97 -3.02 -0.02 -19.44 16 5 N -0.61 -12.58 2.80 -795.05 -2.23 -14.81 16 6 C 0.10 1.24 6.35 86.36 0.55 1.79 16 7 C -0.14 -1.74 6.08 30.67 0.19 -1.55 16 8 C -0.12 -1.66 5.88 30.62 0.18 -1.48 16 9 C -0.12 -2.68 4.85 30.67 0.15 -2.53 16 10 C 0.15 3.31 2.62 44.97 0.12 3.43 16 11 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 12 C 0.07 2.09 1.67 44.92 0.07 2.16 16 13 H 0.08 2.50 5.51 -20.71 -0.11 2.39 16 14 C -0.14 -3.61 9.02 71.98 0.65 -2.97 16 15 N -0.65 -25.02 4.66 -495.56 -2.31 -27.33 16 16 C 0.07 3.20 5.50 85.55 0.47 3.67 16 17 C 0.44 24.18 7.82 87.66 0.69 24.87 16 18 O -0.63 -38.20 15.78 -3.07 -0.05 -38.25 16 19 N -0.58 -33.01 5.29 -306.99 -1.62 -34.64 16 20 C -0.33 -20.46 9.68 84.04 0.81 -19.64 16 21 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 22 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 23 N -0.92 -53.05 13.05 21.66 0.28 -52.77 16 24 Si 1.00 45.12 29.55 68.60 2.03 47.14 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 H 0.05 1.38 8.10 -2.39 -0.02 1.37 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.02 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.13 1.51 7.70 -2.39 -0.02 1.49 16 32 H 0.10 1.83 7.93 -2.39 -0.02 1.81 16 33 H 0.10 0.89 5.93 -2.39 -0.01 0.87 16 34 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 1.59 6.99 -2.38 -0.02 1.58 16 40 H 0.05 1.37 7.02 -2.39 -0.02 1.35 16 41 H 0.04 1.15 7.58 -2.39 -0.02 1.13 16 42 H 0.05 1.48 6.96 -2.39 -0.02 1.46 16 43 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.33 13.61 5.49 -89.69 -0.49 13.12 16 45 H 0.07 3.01 5.86 -2.39 -0.01 2.99 16 46 H 0.08 3.38 7.53 -2.39 -0.02 3.36 16 47 H 0.39 21.87 7.90 -92.71 -0.73 21.14 16 48 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -76.44 364.88 1.42 -75.02 By element: Atomic # 1 Polarization: 49.80 SS G_CDS: -0.35 Total: 49.45 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 5.70 Total: 15.62 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -5.88 Total: -129.54 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: -0.07 Total: -57.69 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -76.44 1.42 -75.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752132117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.661 kcal (2) G-P(sol) polarization free energy of solvation -76.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds