Wall clock time and date at job start Tue Mar 31 2020 09:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46723 * 2 1 4 4 N 1.46509 * 109.46890 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00141 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00120 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00098 * 179.97438 * 5 4 3 8 8 C 1.53005 * 109.47127 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46864 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00528 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99910 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00101 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47289 * 186.21316 * 12 11 9 14 14 H 1.09005 * 110.00142 * 300.67608 * 13 12 11 15 15 C 1.54334 * 109.99443 * 179.63435 * 13 12 11 16 16 C 1.55157 * 103.02081 * 218.66882 * 15 13 12 17 17 C 1.54915 * 101.58216 * 35.30333 * 16 15 13 18 18 N 1.47027 * 109.87930 * 61.76565 * 13 12 11 19 19 C 1.36935 * 125.64987 * 298.39539 * 18 13 12 20 20 H 1.08003 * 119.99874 * 38.42790 * 19 18 13 21 21 C 1.38816 * 120.00046 * 218.43406 * 19 18 13 22 22 N 1.31613 * 119.99834 * 193.27249 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 13.26795 * 21 19 18 24 24 H 1.48497 * 109.46998 * 267.03687 * 23 21 19 25 25 H 1.48494 * 109.46953 * 147.03695 * 23 21 19 26 26 H 1.48499 * 109.46972 * 27.03820 * 23 21 19 27 27 H 1.09003 * 109.47120 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47131 * 299.99753 * 1 2 3 29 29 H 1.08996 * 109.47725 * 59.99893 * 1 2 3 30 30 H 1.09003 * 109.46488 * 240.00619 * 2 1 3 31 31 H 1.08994 * 109.47253 * 120.00315 * 2 1 3 32 32 H 1.09000 * 109.47486 * 60.00632 * 3 2 1 33 33 H 1.09003 * 109.47633 * 300.00110 * 3 2 1 34 34 H 0.97002 * 119.99450 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.47111 * 60.00094 * 7 5 4 36 36 H 1.08996 * 109.47487 * 299.99515 * 7 5 4 37 37 H 1.09000 * 109.47013 * 59.99912 * 8 7 5 38 38 H 1.08994 * 109.47335 * 300.00003 * 8 7 5 39 39 H 0.97005 * 119.99669 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.46538 * 66.21596 * 12 11 9 41 41 H 1.08997 * 109.47438 * 306.21491 * 12 11 9 42 42 H 1.08993 * 110.84758 * 100.19779 * 15 13 12 43 43 H 1.09000 * 110.66600 * 337.04519 * 15 13 12 44 44 H 1.09003 * 111.00000 * 277.23336 * 16 15 13 45 45 H 1.08997 * 111.00667 * 153.37651 * 16 15 13 46 46 H 1.08997 * 110.36505 * 204.15403 * 17 16 15 47 47 H 1.08994 * 110.36359 * 81.83463 * 17 16 15 48 48 H 0.97007 * 119.99787 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5724 3.6601 0.0002 7 6 5.6858 2.6097 -0.0003 8 6 6.1958 4.0523 -0.0004 9 6 7.7028 4.0523 -0.0011 10 8 8.3093 3.0020 -0.0010 11 7 8.3767 5.2195 -0.0008 12 6 9.8417 5.2195 -0.0009 13 6 10.3517 6.6535 0.1556 14 1 9.9833 7.2717 -0.6630 15 6 11.8950 6.6664 0.1663 16 6 12.2282 7.7424 1.2333 17 6 11.0862 7.5283 2.2580 18 7 9.9018 7.2066 1.4414 19 6 8.5983 7.3875 1.8201 20 1 7.8518 6.6540 1.5534 21 6 8.2365 8.5137 2.5466 22 7 7.0595 8.5684 3.1329 23 14 9.4202 9.9514 2.6921 24 1 10.2339 9.7998 3.9250 25 1 8.6518 11.2203 2.7590 26 1 10.3159 9.9770 1.5079 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9900 0.6025 -0.0006 35 1 6.0491 2.0962 -0.8905 36 1 6.0492 2.0957 0.8895 37 1 5.8325 4.5662 0.8896 38 1 5.8325 4.5661 -0.8903 39 1 7.8917 6.0596 -0.0005 40 1 10.2049 4.8053 -0.9414 41 1 10.2051 4.6121 0.8280 42 1 12.2872 6.9557 -0.8087 43 1 12.2858 5.6936 0.4645 44 1 12.1859 8.7438 0.8048 45 1 13.2010 7.5542 1.6875 46 1 10.9155 8.4393 2.8316 47 1 11.3247 6.6989 2.9238 48 1 6.8067 9.3552 3.6409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753116845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:13 Heat of formation + Delta-G solvation = -65.365086 kcal Electronic energy + Delta-G solvation = -25972.357101 eV Core-core repulsion = 22255.354300 eV Total energy + Delta-G solvation = -3717.002801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.89000 -39.09550 -37.84223 -35.98503 -33.95971 -32.98909 -32.67247 -32.35310 -29.98914 -29.46295 -27.10404 -25.35485 -24.38791 -23.17799 -21.90806 -20.93577 -20.26100 -19.81916 -19.28573 -17.54308 -16.85165 -16.29672 -16.19302 -16.12273 -15.62978 -15.46148 -15.15472 -14.64501 -14.40709 -13.83173 -13.70884 -13.25619 -13.18751 -12.91954 -12.84064 -12.57102 -12.44190 -12.35794 -12.13280 -11.92830 -11.79146 -11.46183 -11.32680 -11.27410 -11.22261 -10.99973 -10.86761 -10.69889 -10.47609 -10.18690 -9.84582 -9.80812 -9.56007 -9.30743 -9.17927 -8.62654 -8.31668 -6.81332 -6.02495 -3.53044 2.68430 3.05047 3.18918 3.29109 3.42782 3.47703 3.88762 4.47760 4.51216 4.63214 4.75350 4.89000 4.93544 5.12508 5.14494 5.24211 5.30552 5.31317 5.33175 5.41835 5.44748 5.49640 5.55199 5.67921 5.77301 5.78822 5.87245 5.88298 5.95218 6.04361 6.11189 6.12707 6.19863 6.26126 6.33592 6.35013 6.39697 6.56850 6.83980 6.86700 7.11721 7.39876 7.88521 8.17752 8.22012 8.29050 8.74921 8.82230 9.60125 10.20421 11.10902 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.002737 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.030271 B =10226.829472 C =11474.607815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.737 5.737 5 C 0.512 3.488 6 O -0.535 6.535 7 C -0.120 4.120 8 C -0.127 4.127 9 C 0.511 3.489 10 O -0.569 6.569 11 N -0.706 5.706 12 C 0.117 3.883 13 C 0.143 3.857 14 H 0.048 0.952 15 C -0.121 4.121 16 C -0.136 4.136 17 C 0.117 3.883 18 N -0.602 5.602 19 C -0.260 4.260 20 H 0.092 0.908 21 C 0.036 3.964 22 N -0.901 5.901 23 Si 0.895 3.105 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.268 1.268 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.401 0.599 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.415 0.585 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.040 0.960 47 H 0.030 0.970 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 -13.875 -8.042 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.391 5.391 5 C 0.299 3.701 6 O -0.411 6.411 7 C -0.160 4.160 8 C -0.167 4.167 9 C 0.298 3.702 10 O -0.450 6.450 11 N -0.360 5.360 12 C -0.009 4.009 13 C 0.036 3.964 14 H 0.066 0.934 15 C -0.159 4.159 16 C -0.175 4.175 17 C -0.007 4.007 18 N -0.328 5.328 19 C -0.388 4.388 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.542 5.542 23 Si 0.727 3.273 24 H -0.216 1.216 25 H -0.233 1.233 26 H -0.193 1.193 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.255 0.745 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.681 -13.683 -7.916 16.231 hybrid contribution 0.550 0.853 0.372 1.081 sum -3.131 -12.830 -7.545 15.210 Atomic orbital electron populations 1.21682 0.94607 1.02071 1.02423 1.21738 0.96970 0.95971 1.02701 1.21390 0.79872 0.96950 1.02509 1.46041 1.07222 1.08917 1.76876 1.20873 0.90521 0.83415 0.75338 1.90742 1.70614 1.31172 1.48584 1.21333 0.90329 0.98821 1.05556 1.21352 0.92161 0.96990 1.06196 1.20523 0.89850 0.83930 0.75924 1.90616 1.70786 1.31633 1.51938 1.46293 1.07765 1.09167 1.72737 1.21880 0.79987 0.98958 1.00097 1.21289 0.92437 0.92012 0.90701 0.93397 1.22484 0.95324 0.99202 0.98934 1.22782 0.98312 0.98934 0.97427 1.21899 0.87377 0.97945 0.93522 1.44652 1.01823 1.75475 1.10840 1.18672 0.82670 1.03335 1.34125 0.89114 1.25517 0.95560 0.97246 0.98211 1.69775 1.20949 1.29724 1.33792 0.86629 0.80336 0.82195 0.78152 1.21596 1.23279 1.19277 0.92250 0.92271 0.92352 0.91353 0.91273 0.91463 0.91581 0.76545 0.88381 0.88149 0.87611 0.88548 0.74452 0.93069 0.91886 0.91453 0.91345 0.91575 0.91597 0.94191 0.95207 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.14 -0.85 6.05 -26.73 -0.16 -1.01 16 3 C 0.12 1.07 5.67 -4.04 -0.02 1.05 16 4 N -0.74 -7.32 5.56 -60.29 -0.33 -7.65 16 5 C 0.51 6.92 7.83 -10.99 -0.09 6.84 16 6 O -0.54 -9.49 15.98 5.55 0.09 -9.40 16 7 C -0.12 -1.56 4.99 -27.88 -0.14 -1.70 16 8 C -0.13 -1.99 4.99 -27.88 -0.14 -2.12 16 9 C 0.51 9.28 7.83 -10.98 -0.09 9.19 16 10 O -0.57 -11.43 15.97 5.56 0.09 -11.34 16 11 N -0.71 -13.21 4.36 -60.30 -0.26 -13.47 16 12 C 0.12 2.11 5.19 -4.04 -0.02 2.09 16 13 C 0.14 2.65 3.34 -66.95 -0.22 2.42 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.12 -1.85 6.48 -24.89 -0.16 -2.01 16 16 C -0.14 -2.26 7.09 -24.58 -0.17 -2.44 16 17 C 0.12 2.45 6.14 -2.53 -0.02 2.43 16 18 N -0.60 -13.62 2.65 -162.56 -0.43 -14.05 16 19 C -0.26 -6.83 9.42 -15.06 -0.14 -6.97 16 20 H 0.09 2.45 5.44 -52.48 -0.29 2.17 16 21 C 0.04 1.01 5.48 -17.43 -0.10 0.91 16 22 N -0.90 -26.79 13.97 55.49 0.78 -26.01 16 23 Si 0.90 22.12 24.76 -169.99 -4.21 17.91 16 24 H -0.29 -7.06 6.86 56.52 0.39 -6.67 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.27 -6.37 6.76 56.52 0.38 -5.99 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.40 2.82 8.47 -40.82 -0.35 2.47 16 35 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.10 1.27 8.10 -51.93 -0.42 0.85 16 37 H 0.11 1.84 8.10 -51.93 -0.42 1.42 16 38 H 0.10 1.43 8.10 -51.93 -0.42 1.01 16 39 H 0.42 8.10 6.07 -40.82 -0.25 7.86 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 44 H 0.07 1.13 7.95 -51.93 -0.41 0.71 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.04 0.91 3.20 -51.93 -0.17 0.75 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -33.44 379.89 -7.87 -41.31 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -8.21 Total: 8.79 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.10 Total: 8.20 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.25 Total: -61.19 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.18 Total: -20.74 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.21 Total: 17.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.44 -7.87 -41.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753116845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.055 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds